#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
TMPRSS2--ERG	4123	0	4123.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	0	50	4124.00	80.86	GT	1.6895	AG	1.9219	13.8995	1104	0
FGFR3--TACC3	3715	8	3715.00	8.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	58	2770	63.12	1.34	GT	1.8892	AG	1.7819	12.5511	627	0
TPM3--NTRK1	1148	3	1148.00	3.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	8237	28	0.14	39.72	GT	1.9329	AG	1.6895	3.8803	355	0
TPM3--NTRK1	7	0	7.00	0.00	TPM3^ENSG00000143549.21	11701	chr1:154172088:-	NTRK1^ENSG00000198400.13	42403	chr1:156874904:+	INCL_NON_REF_SPLICE	YES	7858	149	0.00	0.05	AT	1.8295	CC	1.7465	0.0236	324	0
LMNA--NTRK1	1025	7	1025.00	6.99	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	2893	209	0.36	4.92	GT	1.7465	AG	1.5058	3.4791	947	0
LMNA--NTRK1	6	2	6.00	0.01	LMNA^ENSG00000160789.23	17728	chr1:156130768:+	NTRK1^ENSG00000198400.13	40292	chr1:156874909:+	INCL_NON_REF_SPLICE	NO	2975	220	0.00	0.04	CC	1.5546	TC	1.4566	0.0202	943	0
ETV6--NTRK3	784	4	784.00	4.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	2778	8	0.28	87.67	GT	1.7819	AG	1.9656	2.6565	1252	0
FGFR3--BAIAP2L1	665	1	665.00	1.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	57	46	11.50	14.19	GT	1.8892	AG	1.8062	2.2453	1171	0
NCOA4--RET	598	3	598.00	3.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	2280	262	0.26	2.29	GT	1.9086	AG	1.8323	2.0261	5144	0
CCDC6--RET	569	6	569.00	6.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	2168	262	0.27	2.19	GT	1.8892	AG	1.8323	1.9384	2092	0
KIF5B--RET	455	4	455.00	4.00	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	1335	10	0.34	41.82	GT	1.9656	AG	1.9656	1.5474	3178	0
EML4--ALK	402	0	402.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	621	37	0.65	10.61	GT	1.6895	AG	1.9086	1.3552	1550	0
AC015911.9--SLFN12L	373	24	373.00	21.04	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000205045.11	6142	chr17:35480195:-	ONLY_REF_SPLICE	YES	0	414	398.00	0.96	GT	1.9329	AG	1.8892	1.3284	533	0
AC015911.9--SLFN12L	159	8	159.00	2.25	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000286065.2	8152	chr17:35478185:-	ONLY_REF_SPLICE	YES	0	593	168.00	0.28	GT	1.9329	AG	1.9329	0.5436	1380	0
AC015911.9--SLFN12L	8	24	8.00	0.45	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000205045.11	4635	chr17:35487914:-	INCL_NON_REF_SPLICE	YES	0	0	33.00	33.00	GT	1.9329	AG	1.7819	0.0285	1749	0
AC015911.9--SLFN12L	10	5	10.00	0.09	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000205045.11	9263	chr17:35475485:-	ONLY_REF_SPLICE	YES	0	759	16.00	0.02	GT	1.9329	AG	1.7968	0.034	508	0
AC015911.9--SLFN12L	3	24	3.00	0.17	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000205045.11	4577	chr17:35487972:-	INCL_NON_REF_SPLICE	YES	0	0	28.00	28.00	GT	1.9329	AG	1.9219	0.0107	1803	0
AC015911.9--SLFN12L	3	0	3.00	0.00	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000205045.11	12060	chr17:35464662:-	ONLY_REF_SPLICE	YES	0	8	4.00	0.44	GT	1.9329	AG	1.2419	0.0101	2031	0
SLC45A3--BRAF	379	0	379.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	2	1407	126.67	0.27	GT	1.5628	AG	1.7465	1.2777	2599	0
SLC34A2--ROS1	287	8	287.00	8.00	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	17	296.00	16.44	GT	1.8892	AG	1.7465	0.9945	999	0
EGFR--SEPTIN14	279	5	279.00	5.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	6	23	40.71	11.88	GT	1.8892	AG	1.9899	0.9575	658	0
PAX8--PPARG	249	0	249.00	0.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	61	13	4.03	17.86	GT	1.8295	AG	1.9329	0.8394	1923	0
CD74--ROS1	226	5	226.00	4.98	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	27479	17	0.01	12.89	GT	1.7819	AG	1.7465	0.7787	2407	0
CD74--ROS1	5	1	5.00	0.02	CD74^ENSG00000019582.16	4989	chr5:150404681:-	ROS1^ENSG00000047936.11	48793	chr6:117324353:-	INCL_NON_REF_SPLICE	YES	29084	158	0.00	0.04	GG	1.7819	TT	1.9329	0.017	2378	0
TFG--NTRK1	213	1	213.00	1.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	1514	28	0.14	7.41	GT	1.9329	AG	1.6895	0.7215	883	0
STX16--NPEPL1	188	4	188.00	3.95	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1234	186	0.16	1.03	GT	1.7968	AG	1.8256	0.6471	1940	0
STX16--NPEPL1	9	1	9.00	0.05	STX16^ENSG00000124222.22	7774	chr20:58671297:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1451	186	0.01	0.06	GT	1.8062	AG	1.8256	0.0305	2729	0
STX16--NPEPL1	2	0	2.00	0.00	STX16^ENSG00000124222.22	1835	chr20:58652087:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	2523	186	0.00	0.02	GT	1.9899	AG	1.8256	0.0067	1258	0
TVP23C--CDRT4	84	2	84.00	1.29	TVP23C^ENSG00000175106.17	14926	chr17:15503098:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	INCL_NON_REF_SPLICE	YES	187	2	0.46	29.00	GT	1.9329	AG	1.9899	0.2875	1215	0
TVP23C--CDRT4	23	2	23.00	0.35	TVP23C^ENSG00000175106.17	12676	chr17:15516419:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	27	2	0.93	8.67	GT	1.8892	AG	1.9899	0.0787	1949	0
TVP23C--CDRT4	22	1	22.00	0.17	TVP23C^ENSG00000175106.17	14926	chr17:15503098:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	INCL_NON_REF_SPLICE	YES	187	25	0.13	0.92	GT	1.9329	AG	1.6402	0.0748	137	0
TVP23C--CDRT4	21	1	21.00	0.16	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	536	2	0.04	7.67	GT	1.8323	AG	1.9899	0.0713	2126	0
TVP23C--CDRT4	15	0	15.00	0.00	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	ONLY_REF_SPLICE	YES	536	25	0.03	0.62	GT	1.8323	AG	1.6402	0.0506	1363	0
TVP23C--CDRT4	2	0	2.00	0.00	TVP23C^ENSG00000175106.17	6853	chr17:15545785:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	333	2	0.01	1.00	GT	1.9086	AG	1.9899	0.0067	1774	0
TVP23C--CDRT4	1	2	1.00	0.02	TVP23C^ENSG00000175106.17	12676	chr17:15516419:-	CDRT4^ENSG00000239704.11	21051	chr17:15453085:-	ONLY_REF_SPLICE	NO	27	0	0.14	4.00	GT	1.8892	AG	1.8892	0.0035	2842	0
TVP23C--CDRT4	1	1	1.00	0.01	TVP23C^ENSG00000175106.17	12676	chr17:15516419:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	ONLY_REF_SPLICE	YES	27	25	0.11	0.12	GT	1.8892	AG	1.6402	0.0034	873	0
TLK2--AC240565.1	78	1	76.01	1.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	AC240565.1^ENSG00000280136.2	41242	chr17:106864:-	ONLY_REF_SPLICE	YES	607	29	0.13	2.67	GT	1.8892	AG	1.8892	0.2596	1734	0
TLK2P1--AC110079.1	54	0	50.99	0.00	TLK2P1^ENSG00000226049.3	1830	chr17:34039043:-	AC110079.1^ENSG00000260404.3	8316	chr4:118595912:+	INCL_NON_REF_SPLICE	YES	64	148	0.85	0.37	GT	1.7465	AG	1.8892	0.1719	311	0
EFL1--GOLGA6L11P	9	0	9.00	0.00	EFL1^ENSG00000140598.15	16923	chr15:82214717:-	GOLGA6L11P^ENSG00000223698.3	29147	chrY:24169914:+	ONLY_REF_SPLICE	YES	292	0	0.03	10.00	GT	1.9086	AG	1.5058	0.0303	2639	0