File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0019/A23WJ53LT4/nfcore_rnafusion__73d51683--20260607-225254/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0019_2-73d51683
- Published
- Jun 08, 2026 6:11 AM
Content
View in new tab| sample_id | AFTER_FILTERING_Q30_RATE | CONTAMINATION_PCT | FRAC_ANTISENSE | FRAC_UNMAPPED | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | IS_CONTAMINATED | N_Q30 | PERCENT_DUPLICATION | PCT_MITO_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | SCORE_LOG2TPM1_MEAN_CHRY_SIGNATURE | UNIQUE_READS_RSEQC | UNIQUELY_MAPPED_PERCENT | GC_BIAS | PCT_ADAPTER | PCT_DUPLICATION | PCT_HK_EST_COUNTS | PCT_HK_TPM | PCT_MALE_EST_COUNTS | PCT_MALE_TPM | PCT_RIBO_EST_COUNTS | RIBOSOMAL_CONTAMINATION | PCT_SURVIVING | PERCENT_GC | READS | MAPPED_READS | AVG_SEQUENCE_LENGTH | PERCENT_DUPLICATES | PERCENT_FAILS | TOTAL_SEQUENCES | FRAC_BASES_GT30X | FRAC_READS_OFF_TARGET | FRAC_READS_ON_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT100X | FRAC_PAIRS_OFF_TARGET | FRAC_PAIRS_ON_TARGET | PAIRS_OFF_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | READS_ON_TARGET | EXPECTED_DISTINCT | FRAC_DUPES | UNIQUE_READS | TOTAL_READS | AFTER_FILTERING_GC_CONTENT | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | FRAGMENT_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_ALIGNED | PROPER_PAIRS_PERCENT | PSEUDOALIGNED_READS |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | 0.974553 | 63.73 | 0.9445 | 0.004175 | 174.4 | 157.0 | Yes | 0.975258 | 0.450875 | 0.008 | 0.017 | 3.919 | 576317292.0 | 96.42 | 0.0 | 39.53945133333333 | 33.9138 | 0.776 | 1.102 | 0.0 | 0.0 | 1.72 | 4.962 | 98.90402066666667 | 593424124.0 | 286103172.0 | 0.712246 | 0.047214 | 0.945209 | 678.159103 | 264.0 | 0.61338 | 0.026731 | 0.973269 | 4310666.0 | 156947548.0 | 15438100.0 | 309065374.0 | 430685432.0 | 0.448993 | 326980945.0 | 9999000000.0 | 0.554002 | 78893197632.0 | 593424124.0 | 91.04270014379036 | |||||||||
| NTC_0001_0001_A23WJ53LT4_1 | 0.867032 | N/A | 0.71 | 0.510006 | 85.8 | 31.0 | Skipped | 0.917845 | 0.251843 | 0.0 | 0.0 | 0.0 | 832.0 | 18.84 | 0.0 | 50.938173408784316 | 43.403000000000006 | 0.604 | 1.065 | 0.0 | 0.0 | 0.604 | 1.398 | 3.1517721053277032 | 3598.0 | 339.0 | 0.0 | 0.279645 | 0.138554 | 0.000785 | 0.0 | 0.0 | 0.657895 | 0.342105 | 425.0 | 221.0 | 882.0 | 437.0 | 9495.0 | 0.123402 | 3154.0 | 9999000000.0 | 0.686098 | 328379.0 | 3598.0 | 6.036154860733959 |
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