File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0019/A23WJ53LT4/nfcore_rnafusion__73d51683--20260607-225254/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 2.7 KB
- Workflow Run
- dev_rna_exp0019_2-73d51683
- Published
- Jun 08, 2026 6:12 AM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 76.8892 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 93.9637 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 88.6902 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 9472.488218758 | bclconvert | |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 464646530 | bclconvert |
| NTC_0001_0001_A23WJ53LT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 57079 | bclconvert |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 593424124.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.945209 | seqtools |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.973269 | seqtools |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.047214 | seqtools |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.026731 | seqtools |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 309065374.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 156947548.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 15438100.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 4310666.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 286103172.0 | star |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.004175 | star |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 157.0 | kallisto |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.017 | kallisto |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 4.962 | kallisto |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 63.73 | contamination |
| NTC_0001_0001_A23WJ53LT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 3598.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 69 | fusion |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 69 | fusion |
28 rows