Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/ae0ba399bfdd6d3c9bfef7e4042d51/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/ae0ba399bfdd6d3c9bfef7e4042d51/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/62c4647d80293e26b96ffabdc5114f/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/56ebd22d417c53d6d012b69c0a8ec0/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
UVRAG--POLD3
starfusion
arriba
RNF169--SLCO2B1
starfusion
arriba
LRRC55--MS4A4E
starfusion
arriba
SLCO2B1--SPCS2
starfusion
arriba
TLK2--AC240565.1
starfusion
PGM2L1--MOGAT2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
GUSB--NAIP
starfusion
SHANK2--AP000439.2
starfusion
COL1A1--SLC45A4
starfusion
AGAP12P--FRMPD2
starfusion
LRRC55--MS4A4A
starfusion
PMS2P5--CCDC146
starfusion
RBM4--MS4A6E
arriba
CHRDL2--P4HA3-AS1
arriba
SLCO2B1--RNF169
arriba
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB7
arriba
FAM168A--ASIC2
arriba
CCDC169--SOHLH2
arriba
AC015911.9--SLFN12L
arriba
ASTN2--AL138749.1
arriba
ASTN2--RPS20P25
arriba
TLK2--FAM157A
arriba
CRYZL2P--SEC16B
arriba
AL512590.2--CCDC180
arriba
ZNF528--ZNF610
arriba
ZNF528--ZNF880
arriba
AP001347.1--ANKRD20A11P
arriba
0%| | 0/39 [00:00<?, ?it/s]
Processing UVRAG--POLD3: 0%| | 0/39 [00:00<?, ?it/s]
Processing UVRAG--POLD3: 3%|▎ | 1/39 [00:00<00:04, 9.26it/s]
Processing RNF169--SLCO2B1: 3%|▎ | 1/39 [00:00<00:04, 9.26it/s]
Processing RNF169--SLCO2B1: 5%|▌ | 2/39 [00:00<00:03, 9.48it/s]
Processing LRRC55--MS4A4E: 5%|▌ | 2/39 [00:00<00:03, 9.48it/s]
Processing LRRC55--MS4A4E: 8%|▊ | 3/39 [00:00<00:03, 9.56it/s]
Processing SLCO2B1--SPCS2: 8%|▊ | 3/39 [00:00<00:03, 9.56it/s]
Processing SLCO2B1--SPCS2: 10%|█ | 4/39 [00:00<00:03, 9.60it/s]
Processing TLK2--AC240565.1: 10%|█ | 4/39 [00:00<00:03, 9.60it/s]
Processing TLK2--AC240565.1: 13%|█▎ | 5/39 [00:00<00:03, 9.62it/s]
Processing PGM2L1--MOGAT2: 13%|█▎ | 5/39 [00:00<00:03, 9.62it/s]
Processing PGM2L1--MOGAT2: 15%|█▌ | 6/39 [00:00<00:03, 9.63it/s]
Processing TLK2P1--AC110079.1: 15%|█▌ | 6/39 [00:00<00:03, 9.63it/s]
Processing TLK2P1--AC110079.1: 18%|█▊ | 7/39 [00:00<00:03, 9.64it/s]
Processing GUSB--NAIP: 18%|█▊ | 7/39 [00:00<00:03, 9.64it/s]
Processing GUSB--NAIP: 21%|██ | 8/39 [00:00<00:03, 9.64it/s]
Processing SHANK2--AP000439.2: 21%|██ | 8/39 [00:00<00:03, 9.64it/s]
Processing SHANK2--AP000439.2: 23%|██▎ | 9/39 [00:00<00:03, 9.65it/s]
Processing COL1A1--SLC45A4: 23%|██▎ | 9/39 [00:00<00:03, 9.65it/s]
Processing COL1A1--SLC45A4: 26%|██▌ | 10/39 [00:01<00:03, 9.65it/s]
Processing AGAP12P--FRMPD2: 26%|██▌ | 10/39 [00:01<00:03, 9.65it/s]
Processing AGAP12P--FRMPD2: 28%|██▊ | 11/39 [00:01<00:02, 9.65it/s]
Processing LRRC55--MS4A4A: 28%|██▊ | 11/39 [00:01<00:02, 9.65it/s]
Processing LRRC55--MS4A4A: 31%|███ | 12/39 [00:01<00:02, 9.65it/s]
Processing PMS2P5--CCDC146: 31%|███ | 12/39 [00:01<00:02, 9.65it/s]
Processing PMS2P5--CCDC146: 33%|███▎ | 13/39 [00:01<00:02, 9.65it/s]
Processing RBM4--MS4A6E: 33%|███▎ | 13/39 [00:01<00:02, 9.65it/s]
Processing RBM4--MS4A6E: 36%|███▌ | 14/39 [00:01<00:02, 9.65it/s]
Processing CHRDL2--P4HA3-AS1: 36%|███▌ | 14/39 [00:01<00:02, 9.65it/s]
Processing CHRDL2--P4HA3-AS1: 38%|███▊ | 15/39 [00:01<00:02, 9.65it/s]
Processing SLCO2B1--RNF169: 38%|███▊ | 15/39 [00:01<00:02, 9.65it/s]
Processing SLCO2B1--RNF169: 41%|████ | 16/39 [00:01<00:02, 9.65it/s]
Processing TVP23C--CDRT4: 41%|████ | 16/39 [00:01<00:02, 9.65it/s]
Processing TVP23C--CDRT4: 44%|████▎ | 17/39 [00:01<00:02, 9.65it/s]
Processing STX16--NPEPL1: 44%|████▎ | 17/39 [00:01<00:02, 9.65it/s]
Processing STX16--NPEPL1: 46%|████▌ | 18/39 [00:01<00:02, 9.66it/s]
Processing PCDHGB2--PCDHGA8: 46%|████▌ | 18/39 [00:01<00:02, 9.66it/s]
Processing PCDHGB2--PCDHGA8: 49%|████▊ | 19/39 [00:01<00:02, 9.66it/s]
Processing PCDHGB2--PCDHGA10: 49%|████▊ | 19/39 [00:01<00:02, 9.66it/s]
Processing PCDHGB2--PCDHGA10: 51%|█████▏ | 20/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC5: 51%|█████▏ | 20/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC5: 54%|█████▍ | 21/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC4: 54%|█████▍ | 21/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC4: 56%|█████▋ | 22/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB6: 56%|█████▋ | 22/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB6: 59%|█████▉ | 23/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA11: 59%|█████▉ | 23/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA11: 62%|██████▏ | 24/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA12: 62%|██████▏ | 24/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA12: 64%|██████▍ | 25/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA9: 64%|██████▍ | 25/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA9: 67%|██████▋ | 26/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC3: 67%|██████▋ | 26/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC3: 69%|██████▉ | 27/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB7: 69%|██████▉ | 27/39 [00:02<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB7: 72%|███████▏ | 28/39 [00:02<00:01, 9.65it/s]
Processing FAM168A--ASIC2: 72%|███████▏ | 28/39 [00:02<00:01, 9.65it/s]
Processing FAM168A--ASIC2: 74%|███████▍ | 29/39 [00:03<00:01, 9.65it/s]
Processing CCDC169--SOHLH2: 74%|███████▍ | 29/39 [00:03<00:01, 9.65it/s]
Processing CCDC169--SOHLH2: 77%|███████▋ | 30/39 [00:03<00:00, 9.65it/s]
Processing AC015911.9--SLFN12L: 77%|███████▋ | 30/39 [00:03<00:00, 9.65it/s]
Processing AC015911.9--SLFN12L: 79%|███████▉ | 31/39 [00:03<00:00, 9.65it/s]
Processing ASTN2--AL138749.1: 79%|███████▉ | 31/39 [00:03<00:00, 9.65it/s]
Processing ASTN2--AL138749.1: 82%|████████▏ | 32/39 [00:03<00:00, 9.65it/s]
Processing ASTN2--RPS20P25: 82%|████████▏ | 32/39 [00:03<00:00, 9.65it/s]
Processing ASTN2--RPS20P25: 85%|████████▍ | 33/39 [00:03<00:00, 9.65it/s]
Processing TLK2--FAM157A: 85%|████████▍ | 33/39 [00:03<00:00, 9.65it/s]
Processing TLK2--FAM157A: 87%|████████▋ | 34/39 [00:03<00:00, 9.65it/s]
Processing CRYZL2P--SEC16B: 87%|████████▋ | 34/39 [00:03<00:00, 9.65it/s]
Processing CRYZL2P--SEC16B: 90%|████████▉ | 35/39 [00:03<00:00, 9.65it/s]
Processing AL512590.2--CCDC180: 90%|████████▉ | 35/39 [00:03<00:00, 9.65it/s]
Processing AL512590.2--CCDC180: 92%|█████████▏| 36/39 [00:03<00:00, 9.65it/s]
Processing ZNF528--ZNF610: 92%|█████████▏| 36/39 [00:03<00:00, 9.65it/s]
Processing ZNF528--ZNF610: 95%|█████████▍| 37/39 [00:03<00:00, 9.65it/s]
Processing ZNF528--ZNF880: 95%|█████████▍| 37/39 [00:03<00:00, 9.65it/s]
Processing ZNF528--ZNF880: 97%|█████████▋| 38/39 [00:03<00:00, 9.65it/s]
Processing AP001347.1--ANKRD20A11P: 97%|█████████▋| 38/39 [00:03<00:00, 9.65it/s]
Processing AP001347.1--ANKRD20A11P: 100%|██████████| 39/39 [00:04<00:00, 9.65it/s]
Processing AP001347.1--ANKRD20A11P: 100%|██████████| 39/39 [00:04<00:00, 9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory