Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/ae0ba399bfdd6d3c9bfef7e4042d51/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/ae0ba399bfdd6d3c9bfef7e4042d51/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/62c4647d80293e26b96ffabdc5114f/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/56ebd22d417c53d6d012b69c0a8ec0/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
UVRAG--POLD3
starfusion
arriba
RNF169--SLCO2B1
starfusion
arriba
LRRC55--MS4A4E
starfusion
arriba
SLCO2B1--SPCS2
starfusion
arriba
TLK2--AC240565.1
starfusion
PGM2L1--MOGAT2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
GUSB--NAIP
starfusion
SHANK2--AP000439.2
starfusion
COL1A1--SLC45A4
starfusion
AGAP12P--FRMPD2
starfusion
LRRC55--MS4A4A
starfusion
PMS2P5--CCDC146
starfusion
RBM4--MS4A6E
arriba
CHRDL2--P4HA3-AS1
arriba
SLCO2B1--RNF169
arriba
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB7
arriba
FAM168A--ASIC2
arriba
CCDC169--SOHLH2
arriba
AC015911.9--SLFN12L
arriba
ASTN2--AL138749.1
arriba
ASTN2--RPS20P25
arriba
TLK2--FAM157A
arriba
CRYZL2P--SEC16B
arriba
AL512590.2--CCDC180
arriba
ZNF528--ZNF610
arriba
ZNF528--ZNF880
arriba
AP001347.1--ANKRD20A11P
arriba

  0%|          | 0/39 [00:00<?, ?it/s]
Processing UVRAG--POLD3:   0%|          | 0/39 [00:00<?, ?it/s]
Processing UVRAG--POLD3:   3%|▎         | 1/39 [00:00<00:04,  9.26it/s]
Processing RNF169--SLCO2B1:   3%|▎         | 1/39 [00:00<00:04,  9.26it/s]
Processing RNF169--SLCO2B1:   5%|▌         | 2/39 [00:00<00:03,  9.48it/s]
Processing LRRC55--MS4A4E:   5%|▌         | 2/39 [00:00<00:03,  9.48it/s] 
Processing LRRC55--MS4A4E:   8%|▊         | 3/39 [00:00<00:03,  9.56it/s]
Processing SLCO2B1--SPCS2:   8%|▊         | 3/39 [00:00<00:03,  9.56it/s]
Processing SLCO2B1--SPCS2:  10%|█         | 4/39 [00:00<00:03,  9.60it/s]
Processing TLK2--AC240565.1:  10%|█         | 4/39 [00:00<00:03,  9.60it/s]
Processing TLK2--AC240565.1:  13%|█▎        | 5/39 [00:00<00:03,  9.62it/s]
Processing PGM2L1--MOGAT2:  13%|█▎        | 5/39 [00:00<00:03,  9.62it/s]  
Processing PGM2L1--MOGAT2:  15%|█▌        | 6/39 [00:00<00:03,  9.63it/s]
Processing TLK2P1--AC110079.1:  15%|█▌        | 6/39 [00:00<00:03,  9.63it/s]
Processing TLK2P1--AC110079.1:  18%|█▊        | 7/39 [00:00<00:03,  9.64it/s]
Processing GUSB--NAIP:  18%|█▊        | 7/39 [00:00<00:03,  9.64it/s]        
Processing GUSB--NAIP:  21%|██        | 8/39 [00:00<00:03,  9.64it/s]
Processing SHANK2--AP000439.2:  21%|██        | 8/39 [00:00<00:03,  9.64it/s]
Processing SHANK2--AP000439.2:  23%|██▎       | 9/39 [00:00<00:03,  9.65it/s]
Processing COL1A1--SLC45A4:  23%|██▎       | 9/39 [00:00<00:03,  9.65it/s]   
Processing COL1A1--SLC45A4:  26%|██▌       | 10/39 [00:01<00:03,  9.65it/s]
Processing AGAP12P--FRMPD2:  26%|██▌       | 10/39 [00:01<00:03,  9.65it/s]
Processing AGAP12P--FRMPD2:  28%|██▊       | 11/39 [00:01<00:02,  9.65it/s]
Processing LRRC55--MS4A4A:  28%|██▊       | 11/39 [00:01<00:02,  9.65it/s] 
Processing LRRC55--MS4A4A:  31%|███       | 12/39 [00:01<00:02,  9.65it/s]
Processing PMS2P5--CCDC146:  31%|███       | 12/39 [00:01<00:02,  9.65it/s]
Processing PMS2P5--CCDC146:  33%|███▎      | 13/39 [00:01<00:02,  9.65it/s]
Processing RBM4--MS4A6E:  33%|███▎      | 13/39 [00:01<00:02,  9.65it/s]   
Processing RBM4--MS4A6E:  36%|███▌      | 14/39 [00:01<00:02,  9.65it/s]
Processing CHRDL2--P4HA3-AS1:  36%|███▌      | 14/39 [00:01<00:02,  9.65it/s]
Processing CHRDL2--P4HA3-AS1:  38%|███▊      | 15/39 [00:01<00:02,  9.65it/s]
Processing SLCO2B1--RNF169:  38%|███▊      | 15/39 [00:01<00:02,  9.65it/s]  
Processing SLCO2B1--RNF169:  41%|████      | 16/39 [00:01<00:02,  9.65it/s]
Processing TVP23C--CDRT4:  41%|████      | 16/39 [00:01<00:02,  9.65it/s]  
Processing TVP23C--CDRT4:  44%|████▎     | 17/39 [00:01<00:02,  9.65it/s]
Processing STX16--NPEPL1:  44%|████▎     | 17/39 [00:01<00:02,  9.65it/s]
Processing STX16--NPEPL1:  46%|████▌     | 18/39 [00:01<00:02,  9.66it/s]
Processing PCDHGB2--PCDHGA8:  46%|████▌     | 18/39 [00:01<00:02,  9.66it/s]
Processing PCDHGB2--PCDHGA8:  49%|████▊     | 19/39 [00:01<00:02,  9.66it/s]
Processing PCDHGB2--PCDHGA10:  49%|████▊     | 19/39 [00:01<00:02,  9.66it/s]
Processing PCDHGB2--PCDHGA10:  51%|█████▏    | 20/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  51%|█████▏    | 20/39 [00:02<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGC5:  54%|█████▍    | 21/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  54%|█████▍    | 21/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  56%|█████▋    | 22/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  56%|█████▋    | 22/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  59%|█████▉    | 23/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  59%|█████▉    | 23/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  62%|██████▏   | 24/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  62%|██████▏   | 24/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  64%|██████▍   | 25/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  64%|██████▍   | 25/39 [00:02<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGA9:  67%|██████▋   | 26/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  67%|██████▋   | 26/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  69%|██████▉   | 27/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  69%|██████▉   | 27/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  72%|███████▏  | 28/39 [00:02<00:01,  9.65it/s]
Processing FAM168A--ASIC2:  72%|███████▏  | 28/39 [00:02<00:01,  9.65it/s]  
Processing FAM168A--ASIC2:  74%|███████▍  | 29/39 [00:03<00:01,  9.65it/s]
Processing CCDC169--SOHLH2:  74%|███████▍  | 29/39 [00:03<00:01,  9.65it/s]
Processing CCDC169--SOHLH2:  77%|███████▋  | 30/39 [00:03<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  77%|███████▋  | 30/39 [00:03<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  79%|███████▉  | 31/39 [00:03<00:00,  9.65it/s]
Processing ASTN2--AL138749.1:  79%|███████▉  | 31/39 [00:03<00:00,  9.65it/s]  
Processing ASTN2--AL138749.1:  82%|████████▏ | 32/39 [00:03<00:00,  9.65it/s]
Processing ASTN2--RPS20P25:  82%|████████▏ | 32/39 [00:03<00:00,  9.65it/s]  
Processing ASTN2--RPS20P25:  85%|████████▍ | 33/39 [00:03<00:00,  9.65it/s]
Processing TLK2--FAM157A:  85%|████████▍ | 33/39 [00:03<00:00,  9.65it/s]  
Processing TLK2--FAM157A:  87%|████████▋ | 34/39 [00:03<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  87%|████████▋ | 34/39 [00:03<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  90%|████████▉ | 35/39 [00:03<00:00,  9.65it/s]
Processing AL512590.2--CCDC180:  90%|████████▉ | 35/39 [00:03<00:00,  9.65it/s]
Processing AL512590.2--CCDC180:  92%|█████████▏| 36/39 [00:03<00:00,  9.65it/s]
Processing ZNF528--ZNF610:  92%|█████████▏| 36/39 [00:03<00:00,  9.65it/s]     
Processing ZNF528--ZNF610:  95%|█████████▍| 37/39 [00:03<00:00,  9.65it/s]
Processing ZNF528--ZNF880:  95%|█████████▍| 37/39 [00:03<00:00,  9.65it/s]
Processing ZNF528--ZNF880:  97%|█████████▋| 38/39 [00:03<00:00,  9.65it/s]
Processing AP001347.1--ANKRD20A11P:  97%|█████████▋| 38/39 [00:03<00:00,  9.65it/s]
Processing AP001347.1--ANKRD20A11P: 100%|██████████| 39/39 [00:04<00:00,  9.65it/s]
Processing AP001347.1--ANKRD20A11P: 100%|██████████| 39/39 [00:04<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory