File Info
- Filename
- aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/ae0ba399bfdd6d3c9bfef7e4042d51/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.fusions.csv
- Size
- 9.0 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-2d4b78-R1_A23WJ53LT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| UVRAG--POLD3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:75888903#chr11:74594061,reading-frame: in-frame,type: duplication,split_reads1: 286,split_reads2: 42,discordant_mates: 9,coverage1: 3954,coverage2: 575,confidence: high | position: chr11:75888903:+#chr11:74594061:+,junction_reads: 636,spanning_reads: 4,ffmp: 2.1576 | |
| RNF169--SLCO2B1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:74749382#chr11:75163963,reading-frame: out-of-frame,type: deletion,split_reads1: 118,split_reads2: 137,discordant_mates: 2,coverage1: 1138,coverage2: 1447,confidence: high | position: chr11:74749382:+#chr11:75163963:+,junction_reads: 260,spanning_reads: 2,ffmp: 0.8832 | |
| LRRC55--MS4A4E | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:57182683#chr11:60230071,reading-frame: out-of-frame,type: inversion,split_reads1: 15,split_reads2: 24,discordant_mates: 4,coverage1: 431,coverage2: 229,confidence: high | position: chr11:57182683:+#chr11:60230071:-,junction_reads: 44,spanning_reads: 4,ffmp: 0.1612 | |
| SLCO2B1--SPCS2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:75165949#chr11:74976857,reading-frame: out-of-frame,type: duplication,split_reads1: 18,split_reads2: 11,discordant_mates: 0,coverage1: 3865,coverage2: 1951,confidence: high | position: chr11:75165949:+#chr11:74976857:+,junction_reads: 32,spanning_reads: 0,ffmp: 0.1079 | |
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 28,spanning_reads: 0,ffmp: 0.0449 | ||
| PGM2L1--MOGAT2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:74398051#chr11:75719992,reading-frame: out-of-frame,type: inversion,split_reads1: 6,split_reads2: 18,discordant_mates: 0,coverage1: 273,coverage2: 52,confidence: high | position: chr11:74398051:-#chr11:75719992:+,junction_reads: 24,spanning_reads: 0,ffmp: 0.0809 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 20,spanning_reads: 0,ffmp: 0.0614 | ||
| GUSB--NAIP | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:65964323:-#chr5:71003857:-,junction_reads: 13,spanning_reads: 0,ffmp: 0.0141 | ||
| SHANK2--AP000439.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:70798443:-#chr11:69427363:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0405 | ||
| COL1A1--SLC45A4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:50189867:-#chr8:141254178:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0371 | ||
| AGAP12P--FRMPD2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:48025897:-#chr10:48181008:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0112 | ||
| LRRC55--MS4A4A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:57182683:+#chr11:60292225:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.004 | ||
| PMS2P5--CCDC146 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:74897835:+#chr7:77167658:+,junction_reads: 8,spanning_reads: 2,ffmp: 0.0158 | ||
| RBM4--MS4A6E | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:66639893#chr11:60370375,reading-frame: out-of-frame,type: inversion/3'-3',split_reads1: 302,split_reads2: 45,discordant_mates: 1,coverage1: 6856,coverage2: 145,confidence: high | ||
| CHRDL2--P4HA3-AS1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:74696585#chr11:74322991,reading-frame: .,type: duplication/3'-3',split_reads1: 139,split_reads2: 113,discordant_mates: 8,coverage1: 297,coverage2: 192,confidence: high | ||
| SLCO2B1--RNF169 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:75165949#chr11:74754816,reading-frame: out-of-frame,type: inversion/3'-3',split_reads1: 7,split_reads2: 24,discordant_mates: 2,coverage1: 3865,coverage2: 42,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 68,split_reads2: 57,discordant_mates: 1,coverage1: 844,coverage2: 420,confidence: high | |
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: .,type: deletion/read-through,split_reads1: 49,split_reads2: 41,discordant_mates: 5,coverage1: 5544,coverage2: 344,confidence: high | ||
| PCDHGB2--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 36,split_reads2: 34,discordant_mates: 0,coverage1: 317,coverage2: 1441,confidence: high | ||
| PCDHGB2--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 36,split_reads2: 34,discordant_mates: 0,coverage1: 317,coverage2: 1441,confidence: high | ||
| PCDHGB2--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 36,split_reads2: 34,discordant_mates: 0,coverage1: 317,coverage2: 1441,confidence: high | ||
| PCDHGB2--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 36,split_reads2: 34,discordant_mates: 0,coverage1: 317,coverage2: 1441,confidence: high | ||
| PCDHGB2--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 36,split_reads2: 34,discordant_mates: 0,coverage1: 317,coverage2: 1441,confidence: high | ||
| PCDHGB2--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 36,split_reads2: 34,discordant_mates: 0,coverage1: 317,coverage2: 1441,confidence: high | ||
| PCDHGB2--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 36,split_reads2: 34,discordant_mates: 0,coverage1: 317,coverage2: 1441,confidence: high | ||
| PCDHGB2--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 36,split_reads2: 34,discordant_mates: 0,coverage1: 317,coverage2: 1441,confidence: high | ||
| PCDHGB2--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 36,split_reads2: 34,discordant_mates: 0,coverage1: 317,coverage2: 1441,confidence: high | ||
| PCDHGB2--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 36,split_reads2: 34,discordant_mates: 0,coverage1: 317,coverage2: 1441,confidence: high | ||
| FAM168A--ASIC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:73597923#chr17:33284504,reading-frame: .,type: translocation/5'-5',split_reads1: 22,split_reads2: 24,discordant_mates: 0,coverage1: 1006,coverage2: 29,confidence: high | ||
| CCDC169--SOHLH2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:36248606#chr13:36202093,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 15,discordant_mates: 0,coverage1: 146,coverage2: 84,confidence: high | ||
| AC015911.9--SLFN12L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:35522279#chr17:35480195,reading-frame: .,type: deletion/read-through,split_reads1: 12,split_reads2: 8,discordant_mates: 1,coverage1: 283,coverage2: 133,confidence: high | ||
| ASTN2--AL138749.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:117291326#chr9:80921534,reading-frame: out-of-frame,type: inversion,split_reads1: 14,split_reads2: 3,discordant_mates: 2,coverage1: 394,coverage2: 7,confidence: high | ||
| ASTN2--RPS20P25 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:117291326#chr9:80921534,reading-frame: out-of-frame,type: inversion,split_reads1: 14,split_reads2: 3,discordant_mates: 2,coverage1: 394,coverage2: 7,confidence: high | ||
| TLK2--FAM157A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126#chr3:198180755,reading-frame: .,type: translocation,split_reads1: 4,split_reads2: 12,discordant_mates: 0,coverage1: 1854,coverage2: 910,confidence: high | ||
| CRYZL2P--SEC16B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:178026155#chr1:177968039,reading-frame: .,type: deletion/read-through,split_reads1: 1,split_reads2: 14,discordant_mates: 0,coverage1: 23,coverage2: 186,confidence: high | ||
| AL512590.2--CCDC180 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:97294991#chr9:97307736,reading-frame: .,type: deletion/read-through,split_reads1: 0,split_reads2: 10,discordant_mates: 1,coverage1: 18,coverage2: 43,confidence: high | ||
| ZNF528--ZNF610 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr19:52406643#chr19:52369560,reading-frame: out-of-frame,type: duplication,split_reads1: 9,split_reads2: 2,discordant_mates: 0,coverage1: 887,coverage2: 3,confidence: high | |
| ZNF528--ZNF880 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:52406643#chr19:52369560,reading-frame: out-of-frame,type: duplication,split_reads1: 9,split_reads2: 2,discordant_mates: 0,coverage1: 887,coverage2: 3,confidence: high | ||
| AP001347.1--ANKRD20A11P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr21:14027597#chr21:13970110,reading-frame: .,type: inversion,split_reads1: 3,split_reads2: 5,discordant_mates: 0,coverage1: 293,coverage2: 610,confidence: high |
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