Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/94234f3360f0388f8b5a9d0547617d/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/728b2aa1fd494edbc4874cbbb7123f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/728b2aa1fd494edbc4874cbbb7123f/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory