Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/414d781812c15a8d1e5e8f7566a121/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/f41766b22a165d87b0e1e85409f727/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/f41766b22a165d87b0e1e85409f727/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
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Processed 349000000 records
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Processed 379000000 records
paired = 188271781
unpaired = 3135418
MERGED PAIRED END READS = 188271781
MATES PROCESSED = 379678980
TOTAL READS     = 191407199
DISTINCT READS  = 4.93016e+07
DISTINCT COUNTS = 600
MAX COUNT       = 545222
COUNTS OF 1     = 1.41089e+07
MAX TERMS       = 100
OBSERVED COUNTS (545223)
1	14108919
2	9285149
3	6874952
4	5080363
5	3711430
6	2682009
7	1928863
8	1388954
9	1003138
10	730406
11	536455
12	399042
13	299883
14	229949
15	177234
16	140001
17	111599
18	89863
19	73467
20	60084
21	49651
22	41760
23	35139
24	30048
25	25559
26	21974
27	18895
28	16293
29	13942
30	12252
31	10701
32	9338
33	8261
34	7227
35	6474
36	5814
37	5304
38	4770
39	4315
40	3811
41	3354
42	3213
43	2967
44	2683
45	2432
46	2268
47	2147
48	1944
49	1814
50	1701
51	1571
52	1445
53	1396
54	1266
55	1209
56	1118
57	1054
58	1014
59	936
60	901
61	804
62	799
63	730
64	757
65	662
66	665
67	574
68	563
69	591
70	552
71	516
72	481
73	470
74	454
75	425
76	403
77	374
78	355
79	389
80	327
81	312
82	284
83	280
84	257
85	266
86	241
87	273
88	214
89	239
90	185
91	208
92	186
93	185
94	210
95	173
96	170
97	166
98	179
99	166
100	162
101	164
102	132
103	132
104	123
105	146
106	130
107	119
108	138
109	85
110	100
111	112
112	97
113	101
114	97
115	103
116	95
117	87
118	98
119	76
120	84
121	71
122	72
123	76
124	77
125	82
126	77
127	85
128	77
129	64
130	78
131	77
132	59
133	69
134	57
135	51
136	47
137	63
138	66
139	46
140	53
141	43
142	47
143	48
144	47
145	43
146	47
147	50
148	44
149	42
150	35
151	43
152	34
153	43
154	36
155	39
156	39
157	19
158	40
159	39
160	31
161	27
162	32
163	36
164	38
165	33
166	25
167	29
168	23
169	27
170	25
171	32
172	23
173	29
174	31
175	25
176	24
177	23
178	23
179	13
180	22
181	16
182	20
183	23
184	23
185	16
186	19
187	20
188	9
189	17
190	16
191	23
192	17
193	19
194	23
195	15
196	21
197	17
198	16
199	19
200	23
201	13
202	17
203	10
204	16
205	11
206	15
207	14
208	9
209	12
210	15
211	10
212	12
213	14
214	13
215	8
216	14
217	10
218	16
219	15
220	7
221	15
222	15
223	11
224	13
225	13
226	8
227	14
228	13
229	11
230	11
231	7
232	7
233	6
234	9
235	10
236	10
237	10
238	2
239	4
240	10
241	10
242	7
243	7
244	8
245	4
246	5
247	6
248	6
249	12
250	3
251	10
252	9
253	11
254	7
255	8
256	3
257	4
258	8
259	7
260	4
261	1
262	6
263	6
264	6
265	8
266	5
267	5
268	9
269	4
270	9
271	6
272	7
273	6
274	4
275	4
276	4
277	5
278	8
279	5
280	7
281	5
282	4
283	9
284	1
285	3
286	5
287	5
288	6
289	2
290	6
291	4
292	4
293	4
294	9
295	5
296	6
297	4
298	3
299	3
300	3
301	1
302	6
303	2
305	7
306	3
307	6
308	2
309	2
310	6
311	2
312	1
313	5
315	8
317	3
318	6
319	4
320	4
321	2
322	4
323	5
324	4
325	3
326	1
327	3
328	2
329	1
330	5
331	3
332	6
333	3
334	1
335	2
337	3
338	3
339	5
340	1
341	4
342	6
343	5
344	5
345	1
346	4
347	2
349	4
350	2
351	4
352	2
353	2
354	3
355	3
356	4
357	6
358	1
359	6
360	1
361	2
362	5
363	3
364	4
365	1
366	5
368	2
369	3
370	4
371	3
373	6
374	1
375	4
376	1
377	2
380	2
381	3
382	2
383	1
385	1
386	3
387	1
389	1
390	2
391	3
392	1
393	3
394	2
396	1
397	3
398	3
399	1
400	2
401	2
403	2
404	2
405	2
406	1
408	1
409	1
410	1
414	2
416	3
417	1
418	1
419	1
421	2
422	1
423	3
424	1
425	1
426	1
429	1
430	1
431	2
432	2
433	2
435	1
436	2
437	4
439	1
441	1
443	2
445	1
446	2
447	2
449	4
450	2
452	2
453	1
457	2
460	1
461	1
463	1
464	1
465	2
466	1
472	1
474	1
475	2
476	1
477	3
478	2
479	4
480	2
483	1
485	1
486	1
487	1
489	1
490	1
491	1
492	1
493	1
508	1
510	3
511	2
512	1
514	1
516	2
517	1
520	4
521	2
522	1
526	1
529	3
530	1
531	2
532	1
535	3
539	1
540	1
544	1
545	1
549	1
551	1
552	1
553	2
554	1
556	1
557	1
560	1
562	1
566	1
569	1
570	1
578	2
580	3
581	1
583	2
584	2
586	1
587	1
588	1
590	1
591	1
595	1
598	2
599	2
604	2
609	1
612	1
613	1
614	1
616	1
625	1
633	1
634	1
636	2
638	1
641	1
642	1
643	1
645	1
667	1
668	1
674	1
675	1
676	1
678	2
679	1
680	3
683	2
692	1
701	1
702	2
708	1
709	2
713	1
715	1
725	1
726	1
727	1
728	2
730	1
738	1
739	1
741	1
755	1
759	1
761	1
773	1
777	1
778	1
788	1
796	2
802	1
817	1
818	1
825	1
827	1
829	1
832	3
833	1
851	1
864	1
876	1
882	1
884	1
891	1
894	1
907	1
915	1
917	1
924	1
928	1
932	2
966	1
977	1
1007	1
1026	1
1032	1
1034	1
1052	1
1063	1
1079	1
1089	1
1095	1
1101	1
1116	1
1119	1
1131	1
1152	1
1161	1
1183	1
1204	1
1205	1
1207	1
1236	1
1239	1
1250	1
1299	1
1375	1
1380	1
1395	1
1485	1
1642	1
1939	1
2065	1
2174	1
4871	1
5650	1
6624	1
22335	1
545222	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..................._.._.._......_.._.........._._._............._._.....
....................._.................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]