Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/db55d94806ce027654295fd462ff00/aih-tih-sc-2905df-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/50b2f2b0b366a26454d9d7124622d0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/50b2f2b0b366a26454d9d7124622d0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/e0a310d4e4d61dccb20b929125f612/aih-tih-sc-2905df-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2905df-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (16627486) splicing reads. 249652 splicing junctions. 175246 known splicing junctions. 74406 novel splicing junctions.
sampling 10% (33254972) splicing reads. 306167 splicing junctions. 187574 known splicing junctions. 118593 novel splicing junctions.
sampling 15% (49882458) splicing reads. 346845 splicing junctions. 194216 known splicing junctions. 152629 novel splicing junctions.
sampling 20% (66509944) splicing reads. 378381 splicing junctions. 198629 known splicing junctions. 179752 novel splicing junctions.
sampling 25% (83137430) splicing reads. 404342 splicing junctions. 201935 known splicing junctions. 202407 novel splicing junctions.
sampling 30% (99764916) splicing reads. 426164 splicing junctions. 204436 known splicing junctions. 221728 novel splicing junctions.
sampling 35% (116392402) splicing reads. 444572 splicing junctions. 206429 known splicing junctions. 238143 novel splicing junctions.
sampling 40% (133019888) splicing reads. 460327 splicing junctions. 208023 known splicing junctions. 252304 novel splicing junctions.
sampling 45% (149647374) splicing reads. 474272 splicing junctions. 209383 known splicing junctions. 264889 novel splicing junctions.
sampling 50% (166274860) splicing reads. 486644 splicing junctions. 210510 known splicing junctions. 276134 novel splicing junctions.
sampling 55% (182902346) splicing reads. 497295 splicing junctions. 211486 known splicing junctions. 285809 novel splicing junctions.
sampling 60% (199529832) splicing reads. 506767 splicing junctions. 212269 known splicing junctions. 294498 novel splicing junctions.
sampling 65% (216157318) splicing reads. 515051 splicing junctions. 212925 known splicing junctions. 302126 novel splicing junctions.
sampling 70% (232784804) splicing reads. 522414 splicing junctions. 213516 known splicing junctions. 308898 novel splicing junctions.
sampling 75% (249412290) splicing reads. 528700 splicing junctions. 214048 known splicing junctions. 314652 novel splicing junctions.
sampling 80% (266039776) splicing reads. 534172 splicing junctions. 214455 known splicing junctions. 319717 novel splicing junctions.
sampling 85% (282667262) splicing reads. 538935 splicing junctions. 214769 known splicing junctions. 324166 novel splicing junctions.
sampling 90% (299294748) splicing reads. 542946 splicing junctions. 215094 known splicing junctions. 327852 novel splicing junctions.
sampling 95% (315922234) splicing reads. 546253 splicing junctions. 215355 known splicing junctions. 330898 novel splicing junctions.
sampling 100% (332549721) splicing reads. 548865 splicing junctions. 215545 known splicing junctions. 333320 novel splicing junctions.
null device 
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