File Info

Filename
aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/a5baf3e8520554ba40fe3fcfbe0328/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:53:29
                             Started mapping on |	Jun 08 07:56:10
                                    Finished on |	Jun 08 08:40:57
       Mapping speed, Million of reads per hour |	351.17

                          Number of input reads |	262112070
                      Average input read length |	252
                                    UNIQUE READS:
                   Uniquely mapped reads number |	249020264
                        Uniquely mapped reads % |	95.01%
                          Average mapped length |	252.25
                       Number of splices: Total |	270592930
            Number of splices: Annotated (sjdb) |	267183077
                       Number of splices: GT/AG |	268173503
                       Number of splices: GC/AG |	1668888
                       Number of splices: AT/AC |	162937
               Number of splices: Non-canonical |	587602
                      Mismatch rate per base, % |	0.29%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.03
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.52
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8370215
             % of reads mapped to multiple loci |	3.19%
        Number of reads mapped to too many loci |	400165
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	492769
       % of reads unmapped: too many mismatches |	0.19%
            Number of reads unmapped: too short |	1934425
                 % of reads unmapped: too short |	0.74%
                Number of reads unmapped: other |	217100
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3005817
                            % of chimeric reads |	1.15%