Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/0f571b72223a40be06efaf34e5ded4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/0f571b72223a40be06efaf34e5ded4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/a0dd166dc22baa7aebfe2baeec7e84/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/4667bbc94c0e0c7ae9bb64638010cc/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (17139331) splicing reads. 277465 splicing junctions. 192890 known splicing junctions. 84575 novel splicing junctions.
sampling 10% (34278663) splicing reads. 339667 splicing junctions. 205416 known splicing junctions. 134251 novel splicing junctions.
sampling 15% (51417994) splicing reads. 382719 splicing junctions. 211754 known splicing junctions. 170965 novel splicing junctions.
sampling 20% (68557326) splicing reads. 415811 splicing junctions. 215993 known splicing junctions. 199818 novel splicing junctions.
sampling 25% (85696658) splicing reads. 442215 splicing junctions. 218937 known splicing junctions. 223278 novel splicing junctions.
sampling 30% (102835989) splicing reads. 464477 splicing junctions. 221118 known splicing junctions. 243359 novel splicing junctions.
sampling 35% (119975321) splicing reads. 482872 splicing junctions. 222903 known splicing junctions. 259969 novel splicing junctions.
sampling 40% (137114653) splicing reads. 498451 splicing junctions. 224366 known splicing junctions. 274085 novel splicing junctions.
sampling 45% (154253984) splicing reads. 511930 splicing junctions. 225529 known splicing junctions. 286401 novel splicing junctions.
sampling 50% (171393316) splicing reads. 523580 splicing junctions. 226464 known splicing junctions. 297116 novel splicing junctions.
sampling 55% (188532648) splicing reads. 533804 splicing junctions. 227270 known splicing junctions. 306534 novel splicing junctions.
sampling 60% (205671979) splicing reads. 542559 splicing junctions. 227954 known splicing junctions. 314605 novel splicing junctions.
sampling 65% (222811311) splicing reads. 550256 splicing junctions. 228575 known splicing junctions. 321681 novel splicing junctions.
sampling 70% (239950643) splicing reads. 556977 splicing junctions. 229091 known splicing junctions. 327886 novel splicing junctions.
sampling 75% (257089974) splicing reads. 562739 splicing junctions. 229562 known splicing junctions. 333177 novel splicing junctions.
sampling 80% (274229306) splicing reads. 567490 splicing junctions. 229895 known splicing junctions. 337595 novel splicing junctions.
sampling 85% (291368638) splicing reads. 571614 splicing junctions. 230194 known splicing junctions. 341420 novel splicing junctions.
sampling 90% (308507969) splicing reads. 575096 splicing junctions. 230441 known splicing junctions. 344655 novel splicing junctions.
sampling 95% (325647301) splicing reads. 577959 splicing junctions. 230656 known splicing junctions. 347303 novel splicing junctions.
sampling 100% (342786633) splicing reads. 580216 splicing junctions. 230826 known splicing junctions. 349390 novel splicing junctions.
null device 
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