.command.out - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (aih-tih-sc-4d6599-R1_A23WJ53LT4_1)

File Info

Filename: .command.out
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/2e79412c38411458a371cf9ebfd517/.command.out
Size: 119.7 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (aih-tih-sc-4d6599-R1_A23WJ53LT4_1)
Attempt
Content

Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file

 ------------------------------------------------------------------------------
|   Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0                      |
|   https://github.com/NBISweden/AGAT                                          |
|   National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se         |
 ------------------------------------------------------------------------------
                                        
                                       
                          ------ Start parsing ------                           
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
	* locus_tag
	* gene_id
=> merge_loci option deactivated
=> Machine information:
	This script is being run by perl v5.32.1
	Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
	Operating system being used: linux 
=> Accessing Ontology
	No ontology accessible from the gff file header!
	We use the SOFA ontology distributed with AGAT:
		/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
	Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
		4 root terms, and 2596 total terms, and 1516 leaf terms
	Filtering ontology:
		We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 5853
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 5853
=> Number of feature type (3rd column): 2
	* Level1: 0 => 
	* level2: 0 => 
	* level3: 2 => exon CDS
	* unknown: 0 => 
=>Check because only level3 features:
 * Number of feature with Parent attribute:0
 * Number of feature with a common attribute:5853
  => Some common attributes and some Parent attributes missing.
  /!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
  see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html 
  /!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote).  see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html 
  !! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
                  ------ End parsing (done in 2 second) ------                  


                           ------ Start checks ------                           
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------

------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------

-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------

--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created: 
AC092807.3--DDAH1	HAVANA	gene	13647	23704	.	+	.	FI_gene_label "DDAH1^ENSG00000153904.21"  ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21"  ; ccdsid "CCDS705.1"  ; exon_id "ENSE00001013010.7"  ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21"  ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3"  ; havana_transcript "OTTHUMT00000029189.3"  ; hgnc_id "HGNC:2715"  ; level 2 ; orig_coord_info "chr1,85464743,85465045,-"  ; protein_id "ENSP00000284031.8"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13"  ; transcript_name "DDAH1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1	HAVANA	mRNA	13647	23704	.	+	.	FI_gene_label "DDAH1^ENSG00000153904.21"  ; ID "AC092807.3--DDAH1^ENST00000284031.13"  ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21"  ; ccdsid "CCDS705.1"  ; exon_id "ENSE00001013010.7"  ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21"  ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3"  ; havana_transcript "OTTHUMT00000029189.3"  ; hgnc_id "HGNC:2715"  ; level 2 ; orig_coord_info "chr1,85464743,85465045,-"  ; protein_id "ENSP00000284031.8"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13"  ; transcript_name "DDAH1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
AHCTF1--NIBAN1	HAVANA	gene	1525	42194	.	+	.	FI_gene_label "AHCTF1^ENSG00000153207.16"  ; ID "AHCTF1--NIBAN1^AHCTF1^ENSG00000153207.16"  ; ccdsid "CCDS1629.2"  ; exon_id "ENSE00003580612.1"  ; exon_number 1 ; gene_id "AHCTF1--NIBAN1^AHCTF1^ENSG00000153207.16"  ; gene_name AHCTF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040706.4"  ; havana_transcript "OTTHUMT00000097818.1"  ; hgnc_id "HGNC:24618"  ; level 2 ; orig_coord_info "chr1,246931308,246931327,-"  ; protein_id "ENSP00000355465.1"  ; tag basic appris_alternative_2 CCDS ; transcript_id "AHCTF1--NIBAN1^ENST00000326225.3"  ; transcript_name "AHCTF1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
AHCTF1--NIBAN1	HAVANA	mRNA	1525	42194	.	+	.	FI_gene_label "AHCTF1^ENSG00000153207.16"  ; ID "AHCTF1--NIBAN1^ENST00000326225.3"  ; Parent "AHCTF1--NIBAN1^AHCTF1^ENSG00000153207.16"  ; ccdsid "CCDS1629.2"  ; exon_id "ENSE00003580612.1"  ; exon_number 1 ; gene_id "AHCTF1--NIBAN1^AHCTF1^ENSG00000153207.16"  ; gene_name AHCTF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040706.4"  ; havana_transcript "OTTHUMT00000097818.1"  ; hgnc_id "HGNC:24618"  ; level 2 ; orig_coord_info "chr1,246931308,246931327,-"  ; protein_id "ENSP00000355465.1"  ; tag basic appris_alternative_2 CCDS ; transcript_id "AHCTF1--NIBAN1^ENST00000326225.3"  ; transcript_name "AHCTF1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
AHCTF1--NIBAN1	HAVANA	gene	45195	67524	.	+	.	FI_gene_label "NIBAN1^ENSG00000135842.17"  ; ID "AHCTF1--NIBAN1^NIBAN1^ENSG00000135842.17"  ; ccdsid "CCDS1364.1"  ; exon_id "ENSE00001444835.2"  ; exon_number 1 ; gene_id "AHCTF1--NIBAN1^NIBAN1^ENSG00000135842.17"  ; gene_name NIBAN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035388.3"  ; havana_transcript "OTTHUMT00000085786.2"  ; hgnc_id "HGNC:16784"  ; level 2 ; orig_coord_info "chr1,184974302,184974356,-"  ; protein_id "ENSP00000356481.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AHCTF1--NIBAN1^ENST00000367511.4"  ; transcript_name "NIBAN1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
AHCTF1--NIBAN1	HAVANA	mRNA	45195	67524	.	+	.	FI_gene_label "NIBAN1^ENSG00000135842.17"  ; ID "AHCTF1--NIBAN1^ENST00000367511.4"  ; Parent "AHCTF1--NIBAN1^NIBAN1^ENSG00000135842.17"  ; ccdsid "CCDS1364.1"  ; exon_id "ENSE00001444835.2"  ; exon_number 1 ; gene_id "AHCTF1--NIBAN1^NIBAN1^ENSG00000135842.17"  ; gene_name NIBAN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035388.3"  ; havana_transcript "OTTHUMT00000085786.2"  ; hgnc_id "HGNC:16784"  ; level 2 ; orig_coord_info "chr1,184974302,184974356,-"  ; protein_id "ENSP00000356481.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AHCTF1--NIBAN1^ENST00000367511.4"  ; transcript_name "NIBAN1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
AP5B1--MYEOV	HAVANA	gene	11084	14216	.	+	.	FI_gene_label "MYEOV^ENSG00000172927.8"  ; ID "AP5B1--MYEOV^MYEOV^ENSG00000172927.8"  ; ccdsid "CCDS8190.1"  ; exon_id "ENSE00001238663.5"  ; exon_number 2 ; gene_id "AP5B1--MYEOV^MYEOV^ENSG00000172927.8"  ; gene_name MYEOV ; gene_type protein_coding ; havana_gene "OTTHUMG00000167836.5"  ; havana_transcript "OTTHUMT00000396548.1"  ; hgnc_id "HGNC:7563"  ; level 2 ; orig_coord_info "chr11,69295355,69295495,+"  ; protein_id "ENSP00000308330.3"  ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "AP5B1--MYEOV^ENST00000308946.3"  ; transcript_name "MYEOV-201"  ; transcript_support_level 1 ; transcript_type protein_coding
AP5B1--MYEOV	HAVANA	mRNA	11084	14216	.	+	.	FI_gene_label "MYEOV^ENSG00000172927.8"  ; ID "AP5B1--MYEOV^ENST00000308946.3"  ; Parent "AP5B1--MYEOV^MYEOV^ENSG00000172927.8"  ; ccdsid "CCDS8190.1"  ; exon_id "ENSE00001238663.5"  ; exon_number 2 ; gene_id "AP5B1--MYEOV^MYEOV^ENSG00000172927.8"  ; gene_name MYEOV ; gene_type protein_coding ; havana_gene "OTTHUMG00000167836.5"  ; havana_transcript "OTTHUMT00000396548.1"  ; hgnc_id "HGNC:7563"  ; level 2 ; orig_coord_info "chr11,69295355,69295495,+"  ; protein_id "ENSP00000308330.3"  ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "AP5B1--MYEOV^ENST00000308946.3"  ; transcript_name "MYEOV-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
AP5B1--MYEOV	HAVANA	gene	1001	8079	.	+	.	FI_gene_label "AP5B1^ENSG00000254470.3"  ; ID "AP5B1--MYEOV^AP5B1^ENSG00000254470.3"  ; ccdsid "CCDS58146.1"  ; exon_id "ENSE00002581202.2"  ; exon_number 1 ; gene_id "AP5B1--MYEOV^AP5B1^ENSG00000254470.3"  ; gene_name AP5B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166593.3"  ; havana_transcript "OTTHUMT00000390636.3"  ; hgnc_id "HGNC:25104"  ; level 2 ; orig_coord_info "chr11,65780442,65780591,-"  ; protein_id "ENSP00000454303.1"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AP5B1--MYEOV^ENST00000532090.3"  ; transcript_name "AP5B1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
AP5B1--MYEOV	HAVANA	mRNA	1001	8079	.	+	.	FI_gene_label "AP5B1^ENSG00000254470.3"  ; ID "AP5B1--MYEOV^ENST00000532090.3"  ; Parent "AP5B1--MYEOV^AP5B1^ENSG00000254470.3"  ; ccdsid "CCDS58146.1"  ; exon_id "ENSE00002581202.2"  ; exon_number 1 ; gene_id "AP5B1--MYEOV^AP5B1^ENSG00000254470.3"  ; gene_name AP5B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166593.3"  ; havana_transcript "OTTHUMT00000390636.3"  ; hgnc_id "HGNC:25104"  ; level 2 ; orig_coord_info "chr11,65780442,65780591,-"  ; protein_id "ENSP00000454303.1"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AP5B1--MYEOV^ENST00000532090.3"  ; transcript_name "AP5B1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
AP5B1--OR4D11	HAVANA	gene	11080	12015	.	+	.	FI_gene_label "OR4D11^ENSG00000176200.1"  ; ID "AP5B1--OR4D11^OR4D11^ENSG00000176200.1"  ; ccdsid "CCDS31563.1"  ; exon_id "ENSE00001270798.1"  ; exon_number 1 ; gene_id "AP5B1--OR4D11^OR4D11^ENSG00000176200.1"  ; gene_name OR4D11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167342.2"  ; havana_transcript "OTTHUMT00000394236.2"  ; hgnc_id "HGNC:15174"  ; level 2 ; orig_coord_info "chr11,59503576,59504508,+"  ; protein_id "ENSP00000320077.1"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AP5B1--OR4D11^ENST00000313253.1"  ; transcript_name "OR4D11-201"  ; transcript_support_level NA ; transcript_type protein_coding
AP5B1--OR4D11	HAVANA	mRNA	11080	12015	.	+	.	FI_gene_label "OR4D11^ENSG00000176200.1"  ; ID "AP5B1--OR4D11^ENST00000313253.1"  ; Parent "AP5B1--OR4D11^OR4D11^ENSG00000176200.1"  ; ccdsid "CCDS31563.1"  ; exon_id "ENSE00001270798.1"  ; exon_number 1 ; gene_id "AP5B1--OR4D11^OR4D11^ENSG00000176200.1"  ; gene_name OR4D11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167342.2"  ; havana_transcript "OTTHUMT00000394236.2"  ; hgnc_id "HGNC:15174"  ; level 2 ; orig_coord_info "chr11,59503576,59504508,+"  ; protein_id "ENSP00000320077.1"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AP5B1--OR4D11^ENST00000313253.1"  ; transcript_name "OR4D11-201"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
AP5B1--OR4D11	HAVANA	gene	1001	8079	.	+	.	FI_gene_label "AP5B1^ENSG00000254470.3"  ; ID "AP5B1--OR4D11^AP5B1^ENSG00000254470.3"  ; ccdsid "CCDS58146.1"  ; exon_id "ENSE00002581202.2"  ; exon_number 1 ; gene_id "AP5B1--OR4D11^AP5B1^ENSG00000254470.3"  ; gene_name AP5B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166593.3"  ; havana_transcript "OTTHUMT00000390636.3"  ; hgnc_id "HGNC:25104"  ; level 2 ; orig_coord_info "chr11,65780442,65780591,-"  ; protein_id "ENSP00000454303.1"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AP5B1--OR4D11^ENST00000532090.3"  ; transcript_name "AP5B1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
AP5B1--OR4D11	HAVANA	mRNA	1001	8079	.	+	.	FI_gene_label "AP5B1^ENSG00000254470.3"  ; ID "AP5B1--OR4D11^ENST00000532090.3"  ; Parent "AP5B1--OR4D11^AP5B1^ENSG00000254470.3"  ; ccdsid "CCDS58146.1"  ; exon_id "ENSE00002581202.2"  ; exon_number 1 ; gene_id "AP5B1--OR4D11^AP5B1^ENSG00000254470.3"  ; gene_name AP5B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166593.3"  ; havana_transcript "OTTHUMT00000390636.3"  ; hgnc_id "HGNC:25104"  ; level 2 ; orig_coord_info "chr11,65780442,65780591,-"  ; protein_id "ENSP00000454303.1"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AP5B1--OR4D11^ENST00000532090.3"  ; transcript_name "AP5B1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
AP5B1--OR4D8P	HAVANA	gene	1001	8079	.	+	.	FI_gene_label "AP5B1^ENSG00000254470.3"  ; ID "AP5B1--OR4D8P^AP5B1^ENSG00000254470.3"  ; ccdsid "CCDS58146.1"  ; exon_id "ENSE00002581202.2"  ; exon_number 1 ; gene_id "AP5B1--OR4D8P^AP5B1^ENSG00000254470.3"  ; gene_name AP5B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166593.3"  ; havana_transcript "OTTHUMT00000390636.3"  ; hgnc_id "HGNC:25104"  ; level 2 ; orig_coord_info "chr11,65780442,65780591,-"  ; protein_id "ENSP00000454303.1"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AP5B1--OR4D8P^ENST00000532090.3"  ; transcript_name "AP5B1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
AP5B1--OR4D8P	HAVANA	mRNA	1001	8079	.	+	.	FI_gene_label "AP5B1^ENSG00000254470.3"  ; ID "AP5B1--OR4D8P^ENST00000532090.3"  ; Parent "AP5B1--OR4D8P^AP5B1^ENSG00000254470.3"  ; ccdsid "CCDS58146.1"  ; exon_id "ENSE00002581202.2"  ; exon_number 1 ; gene_id "AP5B1--OR4D8P^AP5B1^ENSG00000254470.3"  ; gene_name AP5B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166593.3"  ; havana_transcript "OTTHUMT00000390636.3"  ; hgnc_id "HGNC:25104"  ; level 2 ; orig_coord_info "chr11,65780442,65780591,-"  ; protein_id "ENSP00000454303.1"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AP5B1--OR4D8P^ENST00000532090.3"  ; transcript_name "AP5B1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
CAMTA1--AL008626.1	HAVANA	gene	1001	37748	.	+	.	FI_gene_label "CAMTA1^ENSG00000171735.19"  ; ID "CAMTA1--AL008626.1^CAMTA1^ENSG00000171735.19"  ; ccdsid "CCDS30576.1"  ; exon_id "ENSE00001294168.3"  ; exon_number 1 ; gene_id "CAMTA1--AL008626.1^CAMTA1^ENSG00000171735.19"  ; gene_name CAMTA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000001212.7"  ; havana_transcript "OTTHUMT00000003588.5"  ; hgnc_id "HGNC:18806"  ; level 2 ; orig_coord_info "chr1,6785531,6785575,+"  ; protein_id "ENSP00000306522.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CAMTA1--AL008626.1^ENST00000303635.12"  ; transcript_name "CAMTA1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
CAMTA1--AL008626.1	HAVANA	mRNA	1001	37748	.	+	.	FI_gene_label "CAMTA1^ENSG00000171735.19"  ; ID "CAMTA1--AL008626.1^ENST00000303635.12"  ; Parent "CAMTA1--AL008626.1^CAMTA1^ENSG00000171735.19"  ; ccdsid "CCDS30576.1"  ; exon_id "ENSE00001294168.3"  ; exon_number 1 ; gene_id "CAMTA1--AL008626.1^CAMTA1^ENSG00000171735.19"  ; gene_name CAMTA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000001212.7"  ; havana_transcript "OTTHUMT00000003588.5"  ; hgnc_id "HGNC:18806"  ; level 2 ; orig_coord_info "chr1,6785531,6785575,+"  ; protein_id "ENSP00000306522.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CAMTA1--AL008626.1^ENST00000303635.12"  ; transcript_name "CAMTA1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
CAMTA1--RPS29P4	HAVANA	gene	1001	37748	.	+	.	FI_gene_label "CAMTA1^ENSG00000171735.19"  ; ID "CAMTA1--RPS29P4^CAMTA1^ENSG00000171735.19"  ; ccdsid "CCDS30576.1"  ; exon_id "ENSE00001294168.3"  ; exon_number 1 ; gene_id "CAMTA1--RPS29P4^CAMTA1^ENSG00000171735.19"  ; gene_name CAMTA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000001212.7"  ; havana_transcript "OTTHUMT00000003588.5"  ; hgnc_id "HGNC:18806"  ; level 2 ; orig_coord_info "chr1,6785531,6785575,+"  ; protein_id "ENSP00000306522.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CAMTA1--RPS29P4^ENST00000303635.12"  ; transcript_name "CAMTA1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
CAMTA1--RPS29P4	HAVANA	mRNA	1001	37748	.	+	.	FI_gene_label "CAMTA1^ENSG00000171735.19"  ; ID "CAMTA1--RPS29P4^ENST00000303635.12"  ; Parent "CAMTA1--RPS29P4^CAMTA1^ENSG00000171735.19"  ; ccdsid "CCDS30576.1"  ; exon_id "ENSE00001294168.3"  ; exon_number 1 ; gene_id "CAMTA1--RPS29P4^CAMTA1^ENSG00000171735.19"  ; gene_name CAMTA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000001212.7"  ; havana_transcript "OTTHUMT00000003588.5"  ; hgnc_id "HGNC:18806"  ; level 2 ; orig_coord_info "chr1,6785531,6785575,+"  ; protein_id "ENSP00000306522.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CAMTA1--RPS29P4^ENST00000303635.12"  ; transcript_name "CAMTA1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
FAF1--GPA33	HAVANA	gene	32696	42571	.	+	.	FI_gene_label "GPA33^ENSG00000143167.12"  ; ID "FAF1--GPA33^GPA33^ENSG00000143167.12"  ; ccdsid "CCDS1258.1"  ; exon_id "ENSE00001445813.2"  ; exon_number 1 ; gene_id "FAF1--GPA33^GPA33^ENSG00000143167.12"  ; gene_name GPA33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034435.6"  ; havana_transcript "OTTHUMT00000083245.2"  ; hgnc_id "HGNC:4445"  ; level 2 ; orig_coord_info "chr1,167090245,167090287,-"  ; protein_id "ENSP00000356842.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAF1--GPA33^ENST00000367868.4"  ; transcript_name "GPA33-201"  ; transcript_support_level 1 ; transcript_type protein_coding
FAF1--GPA33	HAVANA	mRNA	32696	42571	.	+	.	FI_gene_label "GPA33^ENSG00000143167.12"  ; ID "FAF1--GPA33^ENST00000367868.4"  ; Parent "FAF1--GPA33^GPA33^ENSG00000143167.12"  ; ccdsid "CCDS1258.1"  ; exon_id "ENSE00001445813.2"  ; exon_number 1 ; gene_id "FAF1--GPA33^GPA33^ENSG00000143167.12"  ; gene_name GPA33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034435.6"  ; havana_transcript "OTTHUMT00000083245.2"  ; hgnc_id "HGNC:4445"  ; level 2 ; orig_coord_info "chr1,167090245,167090287,-"  ; protein_id "ENSP00000356842.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAF1--GPA33^ENST00000367868.4"  ; transcript_name "GPA33-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
FAF1--GPA33	ENSEMBL	gene	1475	24250	.	+	.	FI_gene_label "FAF1^ENSG00000185104.20"  ; ID "FAF1--GPA33^FAF1^ENSG00000185104.20"  ; exon_id "ENSE00002276283.2"  ; exon_number 1 ; gene_id "FAF1--GPA33^FAF1^ENSG00000185104.20"  ; gene_name FAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007930.7"  ; hgnc_id "HGNC:3578"  ; level 3 ; orig_coord_info "chr1,50959767,50959787,-"  ; protein_id "ENSP00000360843.5"  ; tag basic ; transcript_id "FAF1--GPA33^ENST00000371778.5"  ; transcript_name "FAF1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
FAF1--GPA33	ENSEMBL	mRNA	1475	24250	.	+	.	FI_gene_label "FAF1^ENSG00000185104.20"  ; ID "FAF1--GPA33^ENST00000371778.5"  ; Parent "FAF1--GPA33^FAF1^ENSG00000185104.20"  ; exon_id "ENSE00002276283.2"  ; exon_number 1 ; gene_id "FAF1--GPA33^FAF1^ENSG00000185104.20"  ; gene_name FAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007930.7"  ; hgnc_id "HGNC:3578"  ; level 3 ; orig_coord_info "chr1,50959767,50959787,-"  ; protein_id "ENSP00000360843.5"  ; tag basic ; transcript_id "FAF1--GPA33^ENST00000371778.5"  ; transcript_name "FAF1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
FBXO25--AC240565.1	HAVANA	gene	2640	15007	.	+	.	FI_gene_label "FBXO25^ENSG00000147364.17"  ; ID "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17"  ; ccdsid "CCDS5954.1"  ; exon_id "ENSE00003460930.1"  ; exon_number 2 ; gene_id "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17"  ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8"  ; havana_transcript "OTTHUMT00000206713.2"  ; hgnc_id "HGNC:13596"  ; level 2 ; orig_coord_info "chr8,431358,431444,+"  ; protein_id "ENSP00000276326.6"  ; tag basic CCDS ; transcript_id "FBXO25--AC240565.1^ENST00000276326.9"  ; transcript_name "FBXO25-201"  ; transcript_support_level 1 ; transcript_type protein_coding
FBXO25--AC240565.1	HAVANA	mRNA	2640	15007	.	+	.	FI_gene_label "FBXO25^ENSG00000147364.17"  ; ID "FBXO25--AC240565.1^ENST00000276326.9"  ; Parent "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17"  ; ccdsid "CCDS5954.1"  ; exon_id "ENSE00003460930.1"  ; exon_number 2 ; gene_id "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17"  ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8"  ; havana_transcript "OTTHUMT00000206713.2"  ; hgnc_id "HGNC:13596"  ; level 2 ; orig_coord_info "chr8,431358,431444,+"  ; protein_id "ENSP00000276326.6"  ; tag basic CCDS ; transcript_id "FBXO25--AC240565.1^ENST00000276326.9"  ; transcript_name "FBXO25-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
HSPB11--FGGY	HAVANA	gene	1001	7959	.	+	.	FI_gene_label "HSPB11^ENSG00000081870.12"  ; ID "HSPB11--FGGY^HSPB11^ENSG00000081870.12"  ; ccdsid "CCDS41341.1"  ; exon_id "ENSE00001334213.1"  ; exon_number 2 ; gene_id "HSPB11--FGGY^HSPB11^ENSG00000081870.12"  ; gene_name HSPB11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008408.4"  ; havana_transcript "OTTHUMT00000023114.1"  ; hgnc_id "HGNC:25019"  ; level 2 ; orig_coord_info "chr1,53939985,53940082,-"  ; protein_id "ENSP00000194214.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HSPB11--FGGY^ENST00000194214.10"  ; transcript_name "HSPB11-201"  ; transcript_support_level 1 ; transcript_type protein_coding
HSPB11--FGGY	HAVANA	mRNA	1001	7959	.	+	.	FI_gene_label "HSPB11^ENSG00000081870.12"  ; ID "HSPB11--FGGY^ENST00000194214.10"  ; Parent "HSPB11--FGGY^HSPB11^ENSG00000081870.12"  ; ccdsid "CCDS41341.1"  ; exon_id "ENSE00001334213.1"  ; exon_number 2 ; gene_id "HSPB11--FGGY^HSPB11^ENSG00000081870.12"  ; gene_name HSPB11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008408.4"  ; havana_transcript "OTTHUMT00000023114.1"  ; hgnc_id "HGNC:25019"  ; level 2 ; orig_coord_info "chr1,53939985,53940082,-"  ; protein_id "ENSP00000194214.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HSPB11--FGGY^ENST00000194214.10"  ; transcript_name "HSPB11-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
HSPB11--FGGY	HAVANA	gene	12959	45277	.	+	.	FI_gene_label "FGGY^ENSG00000172456.18"  ; ID "HSPB11--FGGY^FGGY^ENSG00000172456.18"  ; ccdsid "CCDS611.2"  ; exon_id "ENSE00003609460.1"  ; exon_number 2 ; gene_id "HSPB11--FGGY^FGGY^ENSG00000172456.18"  ; gene_name FGGY ; gene_type protein_coding ; havana_gene "OTTHUMG00000008424.16"  ; havana_transcript "OTTHUMT00000023210.2"  ; hgnc_id "HGNC:25610"  ; level 2 ; orig_coord_info "chr1,59321550,59321750,+"  ; protein_id "ENSP00000305922.8"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HSPB11--FGGY^ENST00000303721.12"  ; transcript_name "FGGY-201"  ; transcript_support_level 1 ; transcript_type protein_coding
HSPB11--FGGY	HAVANA	mRNA	12959	45277	.	+	.	FI_gene_label "FGGY^ENSG00000172456.18"  ; ID "HSPB11--FGGY^ENST00000303721.12"  ; Parent "HSPB11--FGGY^FGGY^ENSG00000172456.18"  ; ccdsid "CCDS611.2"  ; exon_id "ENSE00003609460.1"  ; exon_number 2 ; gene_id "HSPB11--FGGY^FGGY^ENSG00000172456.18"  ; gene_name FGGY ; gene_type protein_coding ; havana_gene "OTTHUMG00000008424.16"  ; havana_transcript "OTTHUMT00000023210.2"  ; hgnc_id "HGNC:25610"  ; level 2 ; orig_coord_info "chr1,59321550,59321750,+"  ; protein_id "ENSP00000305922.8"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HSPB11--FGGY^ENST00000303721.12"  ; transcript_name "FGGY-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
JADE1--MMP24	HAVANA	gene	1001	22595	.	+	.	FI_gene_label "JADE1^ENSG00000077684.16"  ; ID "JADE1--MMP24^JADE1^ENSG00000077684.16"  ; ccdsid "CCDS34062.1"  ; exon_id "ENSE00003891680.1"  ; exon_number 2 ; gene_id "JADE1--MMP24^JADE1^ENSG00000077684.16"  ; gene_name JADE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161176.7"  ; havana_transcript "OTTHUMT00000504386.2"  ; hgnc_id "HGNC:30027"  ; level 2 ; orig_coord_info "chr4,128831759,128831810,+"  ; protein_id "ENSP00000226319.6"  ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "JADE1--MMP24^ENST00000226319.11"  ; transcript_name "JADE1-201"  ; transcript_support_level 5 ; transcript_type protein_coding
JADE1--MMP24	HAVANA	mRNA	1001	22595	.	+	.	FI_gene_label "JADE1^ENSG00000077684.16"  ; ID "JADE1--MMP24^ENST00000226319.11"  ; Parent "JADE1--MMP24^JADE1^ENSG00000077684.16"  ; ccdsid "CCDS34062.1"  ; exon_id "ENSE00003891680.1"  ; exon_number 2 ; gene_id "JADE1--MMP24^JADE1^ENSG00000077684.16"  ; gene_name JADE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161176.7"  ; havana_transcript "OTTHUMT00000504386.2"  ; hgnc_id "HGNC:30027"  ; level 2 ; orig_coord_info "chr4,128831759,128831810,+"  ; protein_id "ENSP00000226319.6"  ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "JADE1--MMP24^ENST00000226319.11"  ; transcript_name "JADE1-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
JADE1--MMP24	HAVANA	gene	25596	37971	.	+	.	FI_gene_label "MMP24^ENSG00000125966.10"  ; ID "JADE1--MMP24^MMP24^ENSG00000125966.10"  ; ccdsid "CCDS46593.1"  ; exon_id "ENSE00001049004.7"  ; exon_number 1 ; gene_id "JADE1--MMP24^MMP24^ENSG00000125966.10"  ; gene_name MMP24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032330.6"  ; havana_transcript "OTTHUMT00000078851.6"  ; hgnc_id "HGNC:7172"  ; level 2 ; orig_coord_info "chr20,35226739,35226984,+"  ; protein_id "ENSP00000246186.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "JADE1--MMP24^ENST00000246186.8"  ; transcript_name "MMP24-201"  ; transcript_support_level 1 ; transcript_type protein_coding
JADE1--MMP24	HAVANA	mRNA	25596	37971	.	+	.	FI_gene_label "MMP24^ENSG00000125966.10"  ; ID "JADE1--MMP24^ENST00000246186.8"  ; Parent "JADE1--MMP24^MMP24^ENSG00000125966.10"  ; ccdsid "CCDS46593.1"  ; exon_id "ENSE00001049004.7"  ; exon_number 1 ; gene_id "JADE1--MMP24^MMP24^ENSG00000125966.10"  ; gene_name MMP24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032330.6"  ; havana_transcript "OTTHUMT00000078851.6"  ; hgnc_id "HGNC:7172"  ; level 2 ; orig_coord_info "chr20,35226739,35226984,+"  ; protein_id "ENSP00000246186.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "JADE1--MMP24^ENST00000246186.8"  ; transcript_name "MMP24-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
MMP24--BBC3	HAVANA	gene	1001	13376	.	+	.	FI_gene_label "MMP24^ENSG00000125966.10"  ; ID "MMP24--BBC3^MMP24^ENSG00000125966.10"  ; ccdsid "CCDS46593.1"  ; exon_id "ENSE00001049004.7"  ; exon_number 1 ; gene_id "MMP24--BBC3^MMP24^ENSG00000125966.10"  ; gene_name MMP24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032330.6"  ; havana_transcript "OTTHUMT00000078851.6"  ; hgnc_id "HGNC:7172"  ; level 2 ; orig_coord_info "chr20,35226739,35226984,+"  ; protein_id "ENSP00000246186.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MMP24--BBC3^ENST00000246186.8"  ; transcript_name "MMP24-201"  ; transcript_support_level 1 ; transcript_type protein_coding
MMP24--BBC3	HAVANA	mRNA	1001	13376	.	+	.	FI_gene_label "MMP24^ENSG00000125966.10"  ; ID "MMP24--BBC3^ENST00000246186.8"  ; Parent "MMP24--BBC3^MMP24^ENSG00000125966.10"  ; ccdsid "CCDS46593.1"  ; exon_id "ENSE00001049004.7"  ; exon_number 1 ; gene_id "MMP24--BBC3^MMP24^ENSG00000125966.10"  ; gene_name MMP24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032330.6"  ; havana_transcript "OTTHUMT00000078851.6"  ; hgnc_id "HGNC:7172"  ; level 2 ; orig_coord_info "chr20,35226739,35226984,+"  ; protein_id "ENSP00000246186.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MMP24--BBC3^ENST00000246186.8"  ; transcript_name "MMP24-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
MMP24--BBC3	HAVANA	gene	16377	23527	.	+	.	FI_gene_label "BBC3^ENSG00000105327.18"  ; ID "MMP24--BBC3^BBC3^ENSG00000105327.18"  ; ccdsid "CCDS46128.1"  ; exon_id "ENSE00001207394.3"  ; exon_number 1 ; gene_id "MMP24--BBC3^BBC3^ENSG00000105327.18"  ; gene_name BBC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183489.2"  ; havana_transcript "OTTHUMT00000466872.1"  ; hgnc_id "HGNC:17868"  ; level 2 ; orig_coord_info "chr19,47232515,47232602,-"  ; protein_id "ENSP00000300880.7"  ; tag basic CCDS ; transcript_id "MMP24--BBC3^ENST00000300880.11"  ; transcript_name "BBC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
MMP24--BBC3	HAVANA	mRNA	16377	23527	.	+	.	FI_gene_label "BBC3^ENSG00000105327.18"  ; ID "MMP24--BBC3^ENST00000300880.11"  ; Parent "MMP24--BBC3^BBC3^ENSG00000105327.18"  ; ccdsid "CCDS46128.1"  ; exon_id "ENSE00001207394.3"  ; exon_number 1 ; gene_id "MMP24--BBC3^BBC3^ENSG00000105327.18"  ; gene_name BBC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183489.2"  ; havana_transcript "OTTHUMT00000466872.1"  ; hgnc_id "HGNC:17868"  ; level 2 ; orig_coord_info "chr19,47232515,47232602,-"  ; protein_id "ENSP00000300880.7"  ; tag basic CCDS ; transcript_id "MMP24--BBC3^ENST00000300880.11"  ; transcript_name "BBC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
NOC2L--RPL31P13	HAVANA	gene	1054	14115	.	+	.	FI_gene_label "NOC2L^ENSG00000188976.11"  ; ID "NOC2L--RPL31P13^NOC2L^ENSG00000188976.11"  ; ccdsid "CCDS3.1"  ; exon_id "ENSE00001926296.2"  ; exon_number 1 ; gene_id "NOC2L--RPL31P13^NOC2L^ENSG00000188976.11"  ; gene_name NOC2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000040720.2"  ; havana_transcript "OTTHUMT00000097869.2"  ; hgnc_id "HGNC:24517"  ; level 2 ; orig_coord_info "chr1,959215,959240,-"  ; protein_id "ENSP00000317992.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOC2L--RPL31P13^ENST00000327044.7"  ; transcript_name "NOC2L-201"  ; transcript_support_level 1 ; transcript_type protein_coding
NOC2L--RPL31P13	HAVANA	mRNA	1054	14115	.	+	.	FI_gene_label "NOC2L^ENSG00000188976.11"  ; ID "NOC2L--RPL31P13^ENST00000327044.7"  ; Parent "NOC2L--RPL31P13^NOC2L^ENSG00000188976.11"  ; ccdsid "CCDS3.1"  ; exon_id "ENSE00001926296.2"  ; exon_number 1 ; gene_id "NOC2L--RPL31P13^NOC2L^ENSG00000188976.11"  ; gene_name NOC2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000040720.2"  ; havana_transcript "OTTHUMT00000097869.2"  ; hgnc_id "HGNC:24517"  ; level 2 ; orig_coord_info "chr1,959215,959240,-"  ; protein_id "ENSP00000317992.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOC2L--RPL31P13^ENST00000327044.7"  ; transcript_name "NOC2L-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
NOC2L--RPS6KC1	HAVANA	gene	1054	14115	.	+	.	FI_gene_label "NOC2L^ENSG00000188976.11"  ; ID "NOC2L--RPS6KC1^NOC2L^ENSG00000188976.11"  ; ccdsid "CCDS3.1"  ; exon_id "ENSE00001926296.2"  ; exon_number 1 ; gene_id "NOC2L--RPS6KC1^NOC2L^ENSG00000188976.11"  ; gene_name NOC2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000040720.2"  ; havana_transcript "OTTHUMT00000097869.2"  ; hgnc_id "HGNC:24517"  ; level 2 ; orig_coord_info "chr1,959215,959240,-"  ; protein_id "ENSP00000317992.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOC2L--RPS6KC1^ENST00000327044.7"  ; transcript_name "NOC2L-201"  ; transcript_support_level 1 ; transcript_type protein_coding
NOC2L--RPS6KC1	HAVANA	mRNA	1054	14115	.	+	.	FI_gene_label "NOC2L^ENSG00000188976.11"  ; ID "NOC2L--RPS6KC1^ENST00000327044.7"  ; Parent "NOC2L--RPS6KC1^NOC2L^ENSG00000188976.11"  ; ccdsid "CCDS3.1"  ; exon_id "ENSE00001926296.2"  ; exon_number 1 ; gene_id "NOC2L--RPS6KC1^NOC2L^ENSG00000188976.11"  ; gene_name NOC2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000040720.2"  ; havana_transcript "OTTHUMT00000097869.2"  ; hgnc_id "HGNC:24517"  ; level 2 ; orig_coord_info "chr1,959215,959240,-"  ; protein_id "ENSP00000317992.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOC2L--RPS6KC1^ENST00000327044.7"  ; transcript_name "NOC2L-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
NOC2L--RPS6KC1	HAVANA	gene	17138	38305	.	+	.	FI_gene_label "RPS6KC1^ENSG00000136643.12"  ; ID "NOC2L--RPS6KC1^RPS6KC1^ENSG00000136643.12"  ; ccdsid "CCDS44317.1"  ; exon_id "ENSE00001443124.3"  ; exon_number 1 ; gene_id "NOC2L--RPS6KC1^RPS6KC1^ENSG00000136643.12"  ; gene_name RPS6KC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000036926.4"  ; havana_transcript "OTTHUMT00000089691.1"  ; hgnc_id "HGNC:10439"  ; level 2 ; orig_coord_info "chr1,213051405,213051509,+"  ; protein_id "ENSP00000355926.3"  ; tag basic appris_alternative_2 CCDS ; transcript_id "NOC2L--RPS6KC1^ENST00000366959.4"  ; transcript_name "RPS6KC1-201"  ; transcript_support_level 2 ; transcript_type protein_coding
NOC2L--RPS6KC1	HAVANA	mRNA	17138	38305	.	+	.	FI_gene_label "RPS6KC1^ENSG00000136643.12"  ; ID "NOC2L--RPS6KC1^ENST00000366959.4"  ; Parent "NOC2L--RPS6KC1^RPS6KC1^ENSG00000136643.12"  ; ccdsid "CCDS44317.1"  ; exon_id "ENSE00001443124.3"  ; exon_number 1 ; gene_id "NOC2L--RPS6KC1^RPS6KC1^ENSG00000136643.12"  ; gene_name RPS6KC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000036926.4"  ; havana_transcript "OTTHUMT00000089691.1"  ; hgnc_id "HGNC:10439"  ; level 2 ; orig_coord_info "chr1,213051405,213051509,+"  ; protein_id "ENSP00000355926.3"  ; tag basic appris_alternative_2 CCDS ; transcript_id "NOC2L--RPS6KC1^ENST00000366959.4"  ; transcript_name "RPS6KC1-201"  ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHA13	HAVANA	gene	16359	24799	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13	HAVANA	mRNA	16359	24799	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA10--PCDHA13^ENST00000289272.3"  ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHA13	HAVANA	gene	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13	HAVANA	mRNA	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHA13^ENST00000562220.2"  ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHAC1	HAVANA	gene	16359	26374	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1	HAVANA	mRNA	16359	26374	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA10--PCDHAC1^ENST00000253807.3"  ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHAC1	HAVANA	gene	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1	HAVANA	mRNA	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHAC1^ENST00000562220.2"  ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHAC2	HAVANA	gene	16365	27100	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2	HAVANA	mRNA	16365	27100	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA10--PCDHAC2^ENST00000289269.7"  ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHAC2	HAVANA	gene	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2	HAVANA	mRNA	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHAC2^ENST00000562220.2"  ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHA13	HAVANA	gene	7419	15859	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13	HAVANA	mRNA	7419	15859	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA11--PCDHA13^ENST00000289272.3"  ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHA13	HAVANA	gene	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13	HAVANA	mRNA	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHA13^ENST00000616325.1"  ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHAC1	HAVANA	gene	7419	17434	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1	HAVANA	mRNA	7419	17434	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA11--PCDHAC1^ENST00000253807.3"  ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHAC1	HAVANA	gene	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1	HAVANA	mRNA	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHAC1^ENST00000616325.1"  ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHAC2	HAVANA	gene	7425	18160	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2	HAVANA	mRNA	7425	18160	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA11--PCDHAC2^ENST00000289269.7"  ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHAC2	HAVANA	gene	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2	HAVANA	mRNA	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHAC2^ENST00000616325.1"  ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA4--PCDHA13	HAVANA	gene	14666	23106	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13	HAVANA	mRNA	14666	23106	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA4--PCDHA13^ENST00000289272.3"  ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA4--PCDHA13	ENSEMBL	gene	1001	3590	.	+	.	FI_gene_label "PCDHA4^ENSG00000204967.12"  ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12"  ; exon_id "ENSE00003735925.1"  ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12"  ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5"  ; hgnc_id "HGNC:8670"  ; level 3 ; orig_coord_info "chr5,140806929,140806945,+"  ; protein_id "ENSP00000367365.4"  ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4"  ; transcript_name "PCDHA4-201"  ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13	ENSEMBL	mRNA	1001	3590	.	+	.	FI_gene_label "PCDHA4^ENSG00000204967.12"  ; ID "PCDHA4--PCDHA13^ENST00000378125.4"  ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12"  ; exon_id "ENSE00003735925.1"  ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12"  ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5"  ; hgnc_id "HGNC:8670"  ; level 3 ; orig_coord_info "chr5,140806929,140806945,+"  ; protein_id "ENSP00000367365.4"  ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4"  ; transcript_name "PCDHA4-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA4--PCDHAC1	HAVANA	gene	14666	24681	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1	HAVANA	mRNA	14666	24681	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA4--PCDHAC1^ENST00000253807.3"  ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA4--PCDHAC1	ENSEMBL	gene	1001	3590	.	+	.	FI_gene_label "PCDHA4^ENSG00000204967.12"  ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12"  ; exon_id "ENSE00003735925.1"  ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12"  ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5"  ; hgnc_id "HGNC:8670"  ; level 3 ; orig_coord_info "chr5,140806929,140806945,+"  ; protein_id "ENSP00000367365.4"  ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4"  ; transcript_name "PCDHA4-201"  ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1	ENSEMBL	mRNA	1001	3590	.	+	.	FI_gene_label "PCDHA4^ENSG00000204967.12"  ; ID "PCDHA4--PCDHAC1^ENST00000378125.4"  ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12"  ; exon_id "ENSE00003735925.1"  ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12"  ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5"  ; hgnc_id "HGNC:8670"  ; level 3 ; orig_coord_info "chr5,140806929,140806945,+"  ; protein_id "ENSP00000367365.4"  ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4"  ; transcript_name "PCDHA4-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA4--PCDHAC2	HAVANA	gene	14672	25407	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2	HAVANA	mRNA	14672	25407	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA4--PCDHAC2^ENST00000289269.7"  ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA4--PCDHAC2	ENSEMBL	gene	1001	3590	.	+	.	FI_gene_label "PCDHA4^ENSG00000204967.12"  ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12"  ; exon_id "ENSE00003735925.1"  ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12"  ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5"  ; hgnc_id "HGNC:8670"  ; level 3 ; orig_coord_info "chr5,140806929,140806945,+"  ; protein_id "ENSP00000367365.4"  ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4"  ; transcript_name "PCDHA4-201"  ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2	ENSEMBL	mRNA	1001	3590	.	+	.	FI_gene_label "PCDHA4^ENSG00000204967.12"  ; ID "PCDHA4--PCDHAC2^ENST00000378125.4"  ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12"  ; exon_id "ENSE00003735925.1"  ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12"  ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5"  ; hgnc_id "HGNC:8670"  ; level 3 ; orig_coord_info "chr5,140806929,140806945,+"  ; protein_id "ENSP00000367365.4"  ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4"  ; transcript_name "PCDHA4-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA10	HAVANA	gene	6778	16231	.	+	.	FI_gene_label "PCDHGA10^ENSG00000253846.2"  ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; ccdsid "CCDS47292.1"  ; exon_id "ENSE00001792208.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2"  ; havana_transcript "OTTHUMT00000374747.1"  ; hgnc_id "HGNC:8697"  ; level 2 ; orig_coord_info "chr5,141413176,141415611,+"  ; protein_id "ENSP00000381611.2"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2"  ; transcript_name "PCDHGA10-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10	HAVANA	mRNA	6778	16231	.	+	.	FI_gene_label "PCDHGA10^ENSG00000253846.2"  ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2"  ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; ccdsid "CCDS47292.1"  ; exon_id "ENSE00001792208.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2"  ; havana_transcript "OTTHUMT00000374747.1"  ; hgnc_id "HGNC:8697"  ; level 2 ; orig_coord_info "chr5,141413176,141415611,+"  ; protein_id "ENSP00000381611.2"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2"  ; transcript_name "PCDHGA10-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA10	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA11	HAVANA	gene	6593	15398	.	+	.	FI_gene_label "PCDHGA11^ENSG00000253873.6"  ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; ccdsid "CCDS47294.1"  ; exon_id "ENSE00001533810.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3"  ; havana_transcript "OTTHUMT00000376974.3"  ; hgnc_id "HGNC:8698"  ; level 2 ; orig_coord_info "chr5,141421228,141423660,+"  ; protein_id "ENSP00000381589.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7"  ; transcript_name "PCDHGA11-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11	HAVANA	mRNA	6593	15398	.	+	.	FI_gene_label "PCDHGA11^ENSG00000253873.6"  ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7"  ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; ccdsid "CCDS47294.1"  ; exon_id "ENSE00001533810.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3"  ; havana_transcript "OTTHUMT00000376974.3"  ; hgnc_id "HGNC:8698"  ; level 2 ; orig_coord_info "chr5,141421228,141423660,+"  ; protein_id "ENSP00000381589.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7"  ; transcript_name "PCDHGA11-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA11	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA12	HAVANA	gene	6589	14481	.	+	.	FI_gene_label "PCDHGA12^ENSG00000253159.3"  ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; ccdsid "CCDS4260.1"  ; exon_id "ENSE00000814269.5"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6"  ; havana_transcript "OTTHUMT00000251806.3"  ; hgnc_id "HGNC:8699"  ; level 2 ; orig_coord_info "chr5,141430760,141433183,+"  ; protein_id "ENSP00000252085.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4"  ; transcript_name "PCDHGA12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12	HAVANA	mRNA	6589	14481	.	+	.	FI_gene_label "PCDHGA12^ENSG00000253159.3"  ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4"  ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; ccdsid "CCDS4260.1"  ; exon_id "ENSE00000814269.5"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6"  ; havana_transcript "OTTHUMT00000251806.3"  ; hgnc_id "HGNC:8699"  ; level 2 ; orig_coord_info "chr5,141430760,141433183,+"  ; protein_id "ENSP00000252085.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4"  ; transcript_name "PCDHGA12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA12	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA8	HAVANA	gene	9065	18245	.	+	.	FI_gene_label "PCDHGA8^ENSG00000253767.3"  ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; ccdsid "CCDS47291.1"  ; exon_id "ENSE00001533882.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2"  ; havana_transcript "OTTHUMT00000376972.1"  ; hgnc_id "HGNC:8706"  ; level 2 ; orig_coord_info "chr5,141392814,141395237,+"  ; protein_id "ENSP00000381605.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3"  ; transcript_name "PCDHGA8-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8	HAVANA	mRNA	9065	18245	.	+	.	FI_gene_label "PCDHGA8^ENSG00000253767.3"  ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3"  ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; ccdsid "CCDS47291.1"  ; exon_id "ENSE00001533882.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2"  ; havana_transcript "OTTHUMT00000376972.1"  ; hgnc_id "HGNC:8706"  ; level 2 ; orig_coord_info "chr5,141392814,141395237,+"  ; protein_id "ENSP00000381605.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3"  ; transcript_name "PCDHGA8-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA8	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA9	HAVANA	gene	6610	14337	.	+	.	FI_gene_label "PCDHGA9^ENSG00000261934.2"  ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; ccdsid "CCDS58981.1"  ; exon_id "ENSE00002639131.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2"  ; havana_transcript "OTTHUMT00000437105.1"  ; hgnc_id "HGNC:8707"  ; level 2 ; orig_coord_info "chr5,141402953,141405376,+"  ; protein_id "ENSP00000460274.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1"  ; transcript_name "PCDHGA9-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9	HAVANA	mRNA	6610	14337	.	+	.	FI_gene_label "PCDHGA9^ENSG00000261934.2"  ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1"  ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; ccdsid "CCDS58981.1"  ; exon_id "ENSE00002639131.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2"  ; havana_transcript "OTTHUMT00000437105.1"  ; hgnc_id "HGNC:8707"  ; level 2 ; orig_coord_info "chr5,141402953,141405376,+"  ; protein_id "ENSP00000460274.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1"  ; transcript_name "PCDHGA9-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA9	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB6	HAVANA	gene	6771	16370	.	+	.	FI_gene_label "PCDHGB6^ENSG00000253305.2"  ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; ccdsid "CCDS54929.1"  ; exon_id "ENSE00002122685.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2"  ; havana_transcript "OTTHUMT00000374746.1"  ; hgnc_id "HGNC:8713"  ; level 2 ; orig_coord_info "chr5,141408203,141410620,+"  ; protein_id "ENSP00000428603.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1"  ; transcript_name "PCDHGB6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6	HAVANA	mRNA	6771	16370	.	+	.	FI_gene_label "PCDHGB6^ENSG00000253305.2"  ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1"  ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; ccdsid "CCDS54929.1"  ; exon_id "ENSE00002122685.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2"  ; havana_transcript "OTTHUMT00000374746.1"  ; hgnc_id "HGNC:8713"  ; level 2 ; orig_coord_info "chr5,141408203,141410620,+"  ; protein_id "ENSP00000428603.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1"  ; transcript_name "PCDHGB6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB6	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB7	HAVANA	gene	6621	14550	.	+	.	FI_gene_label "PCDHGB7^ENSG00000254122.3"  ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; ccdsid "CCDS47293.1"  ; exon_id "ENSE00001533845.4"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2"  ; havana_transcript "OTTHUMT00000376973.2"  ; hgnc_id "HGNC:8714"  ; level 2 ; orig_coord_info "chr5,141417860,141420274,+"  ; protein_id "ENSP00000381594.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4"  ; transcript_name "PCDHGB7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7	HAVANA	mRNA	6621	14550	.	+	.	FI_gene_label "PCDHGB7^ENSG00000254122.3"  ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4"  ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; ccdsid "CCDS47293.1"  ; exon_id "ENSE00001533845.4"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2"  ; havana_transcript "OTTHUMT00000376973.2"  ; hgnc_id "HGNC:8714"  ; level 2 ; orig_coord_info "chr5,141417860,141420274,+"  ; protein_id "ENSP00000381594.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4"  ; transcript_name "PCDHGB7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB7	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC3	HAVANA	gene	6608	16794	.	+	.	FI_gene_label "PCDHGC3^ENSG00000240184.7"  ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; ccdsid "CCDS4261.1"  ; exon_id "ENSE00001199459.7"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8"  ; havana_transcript "OTTHUMT00000251808.5"  ; hgnc_id "HGNC:8716"  ; level 2 ; orig_coord_info "chr5,141476117,141478546,+"  ; protein_id "ENSP00000312070.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5"  ; transcript_name "PCDHGC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3	HAVANA	mRNA	6608	16794	.	+	.	FI_gene_label "PCDHGC3^ENSG00000240184.7"  ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5"  ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; ccdsid "CCDS4261.1"  ; exon_id "ENSE00001199459.7"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8"  ; havana_transcript "OTTHUMT00000251808.5"  ; hgnc_id "HGNC:8716"  ; level 2 ; orig_coord_info "chr5,141476117,141478546,+"  ; protein_id "ENSP00000312070.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5"  ; transcript_name "PCDHGC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC3	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC4	HAVANA	gene	6766	14562	.	+	.	FI_gene_label "PCDHGC4^ENSG00000242419.5"  ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; ccdsid "CCDS4262.1"  ; exon_id "ENSE00001162305.2"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4"  ; havana_transcript "OTTHUMT00000251820.2"  ; hgnc_id "HGNC:8717"  ; level 2 ; orig_coord_info "chr5,141485174,141487615,+"  ; protein_id "ENSP00000306918.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1"  ; transcript_name "PCDHGC4-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4	HAVANA	mRNA	6766	14562	.	+	.	FI_gene_label "PCDHGC4^ENSG00000242419.5"  ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1"  ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; ccdsid "CCDS4262.1"  ; exon_id "ENSE00001162305.2"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4"  ; havana_transcript "OTTHUMT00000251820.2"  ; hgnc_id "HGNC:8717"  ; level 2 ; orig_coord_info "chr5,141485174,141487615,+"  ; protein_id "ENSP00000306918.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1"  ; transcript_name "PCDHGC4-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC4	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC5	HAVANA	gene	6589	14614	.	+	.	FI_gene_label "PCDHGC5^ENSG00000240764.4"  ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; ccdsid "CCDS4263.1"  ; exon_id "ENSE00000766474.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2"  ; havana_transcript "OTTHUMT00000251819.2"  ; hgnc_id "HGNC:8718"  ; level 2 ; orig_coord_info "chr5,141489241,141491700,+"  ; protein_id "ENSP00000252087.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3"  ; transcript_name "PCDHGC5-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5	HAVANA	mRNA	6589	14614	.	+	.	FI_gene_label "PCDHGC5^ENSG00000240764.4"  ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3"  ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; ccdsid "CCDS4263.1"  ; exon_id "ENSE00000766474.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2"  ; havana_transcript "OTTHUMT00000251819.2"  ; hgnc_id "HGNC:8718"  ; level 2 ; orig_coord_info "chr5,141489241,141491700,+"  ; protein_id "ENSP00000252087.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3"  ; transcript_name "PCDHGC5-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC5	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
RAB11FIP1--FGFR1	HAVANA	gene	1031	14632	.	+	.	FI_gene_label "RAB11FIP1^ENSG00000156675.16"  ; ID "RAB11FIP1--FGFR1^RAB11FIP1^ENSG00000156675.16"  ; ccdsid "CCDS34881.1"  ; exon_id "ENSE00002095920.1"  ; exon_number 1 ; gene_id "RAB11FIP1--FGFR1^RAB11FIP1^ENSG00000156675.16"  ; gene_name RAB11FIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164026.4"  ; havana_transcript "OTTHUMT00000376815.1"  ; hgnc_id "HGNC:30265"  ; level 2 ; orig_coord_info "chr8,37899071,37899441,-"  ; protein_id "ENSP00000287263.4"  ; tag basic appris_alternative_2 CCDS ; transcript_id "RAB11FIP1--FGFR1^ENST00000287263.8"  ; transcript_name "RAB11FIP1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
RAB11FIP1--FGFR1	HAVANA	mRNA	1031	14632	.	+	.	FI_gene_label "RAB11FIP1^ENSG00000156675.16"  ; ID "RAB11FIP1--FGFR1^ENST00000287263.8"  ; Parent "RAB11FIP1--FGFR1^RAB11FIP1^ENSG00000156675.16"  ; ccdsid "CCDS34881.1"  ; exon_id "ENSE00002095920.1"  ; exon_number 1 ; gene_id "RAB11FIP1--FGFR1^RAB11FIP1^ENSG00000156675.16"  ; gene_name RAB11FIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164026.4"  ; havana_transcript "OTTHUMT00000376815.1"  ; hgnc_id "HGNC:30265"  ; level 2 ; orig_coord_info "chr8,37899071,37899441,-"  ; protein_id "ENSP00000287263.4"  ; tag basic appris_alternative_2 CCDS ; transcript_id "RAB11FIP1--FGFR1^ENST00000287263.8"  ; transcript_name "RAB11FIP1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
RAB11FIP1--FGFR1	HAVANA	gene	17851	45381	.	+	.	FI_gene_label "FGFR1^ENSG00000077782.21"  ; ID "RAB11FIP1--FGFR1^FGFR1^ENSG00000077782.21"  ; ccdsid "CCDS43731.1"  ; exon_id "ENSE00003610788.1"  ; exon_number 2 ; gene_id "RAB11FIP1--FGFR1^FGFR1^ENSG00000077782.21"  ; gene_name FGFR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000147366.18"  ; havana_transcript "OTTHUMT00000304017.2"  ; hgnc_id "HGNC:3688"  ; level 2 ; orig_coord_info "chr8,38457356,38457446,-"  ; protein_id "ENSP00000327229.6"  ; tag non_canonical_conserved basic CCDS ; transcript_id "RAB11FIP1--FGFR1^ENST00000326324.10"  ; transcript_name "FGFR1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
RAB11FIP1--FGFR1	HAVANA	mRNA	17851	45381	.	+	.	FI_gene_label "FGFR1^ENSG00000077782.21"  ; ID "RAB11FIP1--FGFR1^ENST00000326324.10"  ; Parent "RAB11FIP1--FGFR1^FGFR1^ENSG00000077782.21"  ; ccdsid "CCDS43731.1"  ; exon_id "ENSE00003610788.1"  ; exon_number 2 ; gene_id "RAB11FIP1--FGFR1^FGFR1^ENSG00000077782.21"  ; gene_name FGFR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000147366.18"  ; havana_transcript "OTTHUMT00000304017.2"  ; hgnc_id "HGNC:3688"  ; level 2 ; orig_coord_info "chr8,38457356,38457446,-"  ; protein_id "ENSP00000327229.6"  ; tag non_canonical_conserved basic CCDS ; transcript_id "RAB11FIP1--FGFR1^ENST00000326324.10"  ; transcript_name "FGFR1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
RAB11FIP1--NSD3	HAVANA	gene	1031	14632	.	+	.	FI_gene_label "RAB11FIP1^ENSG00000156675.16"  ; ID "RAB11FIP1--NSD3^RAB11FIP1^ENSG00000156675.16"  ; ccdsid "CCDS34881.1"  ; exon_id "ENSE00002095920.1"  ; exon_number 1 ; gene_id "RAB11FIP1--NSD3^RAB11FIP1^ENSG00000156675.16"  ; gene_name RAB11FIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164026.4"  ; havana_transcript "OTTHUMT00000376815.1"  ; hgnc_id "HGNC:30265"  ; level 2 ; orig_coord_info "chr8,37899071,37899441,-"  ; protein_id "ENSP00000287263.4"  ; tag basic appris_alternative_2 CCDS ; transcript_id "RAB11FIP1--NSD3^ENST00000287263.8"  ; transcript_name "RAB11FIP1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
RAB11FIP1--NSD3	HAVANA	mRNA	1031	14632	.	+	.	FI_gene_label "RAB11FIP1^ENSG00000156675.16"  ; ID "RAB11FIP1--NSD3^ENST00000287263.8"  ; Parent "RAB11FIP1--NSD3^RAB11FIP1^ENSG00000156675.16"  ; ccdsid "CCDS34881.1"  ; exon_id "ENSE00002095920.1"  ; exon_number 1 ; gene_id "RAB11FIP1--NSD3^RAB11FIP1^ENSG00000156675.16"  ; gene_name RAB11FIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164026.4"  ; havana_transcript "OTTHUMT00000376815.1"  ; hgnc_id "HGNC:30265"  ; level 2 ; orig_coord_info "chr8,37899071,37899441,-"  ; protein_id "ENSP00000287263.4"  ; tag basic appris_alternative_2 CCDS ; transcript_id "RAB11FIP1--NSD3^ENST00000287263.8"  ; transcript_name "RAB11FIP1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
RAB11FIP1--NSD3	HAVANA	gene	17633	33831	.	+	.	FI_gene_label "NSD3^ENSG00000147548.17"  ; ID "RAB11FIP1--NSD3^NSD3^ENSG00000147548.17"  ; ccdsid "CCDS6105.1"  ; exon_id "ENSE00002262898.1"  ; exon_number 2 ; gene_id "RAB11FIP1--NSD3^NSD3^ENSG00000147548.17"  ; gene_name NSD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165115.10"  ; havana_transcript "OTTHUMT00000381925.1"  ; hgnc_id "HGNC:12767"  ; level 2 ; orig_coord_info "chr8,38347497,38348171,-"  ; protein_id "ENSP00000313410.3"  ; tag basic CCDS ; transcript_id "RAB11FIP1--NSD3^ENST00000316985.7"  ; transcript_name "NSD3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
RAB11FIP1--NSD3	HAVANA	mRNA	17633	33831	.	+	.	FI_gene_label "NSD3^ENSG00000147548.17"  ; ID "RAB11FIP1--NSD3^ENST00000316985.7"  ; Parent "RAB11FIP1--NSD3^NSD3^ENSG00000147548.17"  ; ccdsid "CCDS6105.1"  ; exon_id "ENSE00002262898.1"  ; exon_number 2 ; gene_id "RAB11FIP1--NSD3^NSD3^ENSG00000147548.17"  ; gene_name NSD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165115.10"  ; havana_transcript "OTTHUMT00000381925.1"  ; hgnc_id "HGNC:12767"  ; level 2 ; orig_coord_info "chr8,38347497,38348171,-"  ; protein_id "ENSP00000313410.3"  ; tag basic CCDS ; transcript_id "RAB11FIP1--NSD3^ENST00000316985.7"  ; transcript_name "NSD3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
STX16--NPEPL1	HAVANA	gene	1021	7754	.	+	.	FI_gene_label "STX16^ENSG00000124222.22"  ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22"  ; exon_id "ENSE00003459479.1"  ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22"  ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8"  ; havana_transcript "OTTHUMT00000267911.2"  ; hgnc_id "HGNC:11431"  ; level 2 ; orig_coord_info "chr20,58667505,58667597,+"  ; protein_id "ENSP00000312086.8"  ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12"  ; transcript_name "STX16-201"  ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1	HAVANA	mRNA	1021	7754	.	+	.	FI_gene_label "STX16^ENSG00000124222.22"  ; ID "STX16--NPEPL1^ENST00000312283.12"  ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22"  ; exon_id "ENSE00003459479.1"  ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22"  ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8"  ; havana_transcript "OTTHUMT00000267911.2"  ; hgnc_id "HGNC:11431"  ; level 2 ; orig_coord_info "chr20,58667505,58667597,+"  ; protein_id "ENSP00000312086.8"  ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12"  ; transcript_name "STX16-201"  ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created: 
STX16--NPEPL1	HAVANA	gene	18353	29399	.	+	.	FI_gene_label "NPEPL1^ENSG00000215440.12"  ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12"  ; ccdsid "CCDS46621.1"  ; exon_id "ENSE00001408052.7"  ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12"  ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8"  ; havana_transcript "OTTHUMT00000080402.7"  ; hgnc_id "HGNC:16244"  ; level 2 ; orig_coord_info "chr20,58692901,58693050,+"  ; protein_id "ENSP00000348395.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11"  ; transcript_name "NPEPL1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1	HAVANA	mRNA	18353	29399	.	+	.	FI_gene_label "NPEPL1^ENSG00000215440.12"  ; ID "STX16--NPEPL1^ENST00000356091.11"  ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12"  ; ccdsid "CCDS46621.1"  ; exon_id "ENSE00001408052.7"  ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12"  ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8"  ; havana_transcript "OTTHUMT00000080402.7"  ; hgnc_id "HGNC:16244"  ; level 2 ; orig_coord_info "chr20,58692901,58693050,+"  ; protein_id "ENSP00000348395.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11"  ; transcript_name "NPEPL1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
TCF4--HNRNPA1P57	HAVANA	gene	8468	68064	.	+	.	FI_gene_label "TCF4^ENSG00000196628.20"  ; ID "TCF4--HNRNPA1P57^TCF4^ENSG00000196628.20"  ; ccdsid "CCDS42438.1"  ; exon_id "ENSE00003540131.1"  ; exon_number 2 ; gene_id "TCF4--HNRNPA1P57^TCF4^ENSG00000196628.20"  ; gene_name TCF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132713.34"  ; havana_transcript "OTTHUMT00000421628.6"  ; hgnc_id "HGNC:11634"  ; level 2 ; orig_coord_info "chr18,55587045,55587116,-"  ; protein_id "ENSP00000346440.3"  ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "TCF4--HNRNPA1P57^ENST00000354452.8"  ; transcript_name "TCF4-201"  ; transcript_support_level 5 ; transcript_type protein_coding
TCF4--HNRNPA1P57	HAVANA	mRNA	8468	68064	.	+	.	FI_gene_label "TCF4^ENSG00000196628.20"  ; ID "TCF4--HNRNPA1P57^ENST00000354452.8"  ; Parent "TCF4--HNRNPA1P57^TCF4^ENSG00000196628.20"  ; ccdsid "CCDS42438.1"  ; exon_id "ENSE00003540131.1"  ; exon_number 2 ; gene_id "TCF4--HNRNPA1P57^TCF4^ENSG00000196628.20"  ; gene_name TCF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132713.34"  ; havana_transcript "OTTHUMT00000421628.6"  ; hgnc_id "HGNC:11634"  ; level 2 ; orig_coord_info "chr18,55587045,55587116,-"  ; protein_id "ENSP00000346440.3"  ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "TCF4--HNRNPA1P57^ENST00000354452.8"  ; transcript_name "TCF4-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
TLK2--AC240565.1	HAVANA	gene	4784	35054	.	+	.	FI_gene_label "TLK2^ENSG00000146872.18"  ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; ccdsid "CCDS62283.1"  ; exon_id "ENSE00003568961.1"  ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3"  ; havana_transcript "OTTHUMT00000445140.1"  ; hgnc_id "HGNC:11842"  ; level 2 ; orig_coord_info "chr17,62481126,62481206,+"  ; protein_id "ENSP00000316512.9"  ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13"  ; transcript_name "TLK2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1	HAVANA	mRNA	4784	35054	.	+	.	FI_gene_label "TLK2^ENSG00000146872.18"  ; ID "TLK2--AC240565.1^ENST00000326270.13"  ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; ccdsid "CCDS62283.1"  ; exon_id "ENSE00003568961.1"  ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3"  ; havana_transcript "OTTHUMT00000445140.1"  ; hgnc_id "HGNC:11842"  ; level 2 ; orig_coord_info "chr17,62481126,62481206,+"  ; protein_id "ENSP00000316512.9"  ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13"  ; transcript_name "TLK2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
TUFT1--AL049825.1	ENSEMBL	gene	1019	14596	.	+	.	FI_gene_label "TUFT1^ENSG00000143367.16"  ; ID "TUFT1--AL049825.1^TUFT1^ENSG00000143367.16"  ; exon_id "ENSE00002247703.2"  ; exon_number 1 ; gene_id "TUFT1--AL049825.1^TUFT1^ENSG00000143367.16"  ; gene_name TUFT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012536.4"  ; hgnc_id "HGNC:12422"  ; level 3 ; orig_coord_info "chr1,151540367,151540426,+"  ; protein_id "ENSP00000343781.4"  ; tag basic appris_alternative_2 ; transcript_id "TUFT1--AL049825.1^ENST00000353024.4"  ; transcript_name "TUFT1-201"  ; transcript_support_level 2 ; transcript_type protein_coding
TUFT1--AL049825.1	ENSEMBL	mRNA	1019	14596	.	+	.	FI_gene_label "TUFT1^ENSG00000143367.16"  ; ID "TUFT1--AL049825.1^ENST00000353024.4"  ; Parent "TUFT1--AL049825.1^TUFT1^ENSG00000143367.16"  ; exon_id "ENSE00002247703.2"  ; exon_number 1 ; gene_id "TUFT1--AL049825.1^TUFT1^ENSG00000143367.16"  ; gene_name TUFT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012536.4"  ; hgnc_id "HGNC:12422"  ; level 3 ; orig_coord_info "chr1,151540367,151540426,+"  ; protein_id "ENSP00000343781.4"  ; tag basic appris_alternative_2 ; transcript_id "TUFT1--AL049825.1^ENST00000353024.4"  ; transcript_name "TUFT1-201"  ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created: 
TVP23C--CDRT4	HAVANA	gene	1052	15760	.	+	.	FI_gene_label "TVP23C^ENSG00000175106.17"  ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17"  ; ccdsid "CCDS11170.1"  ; exon_id "ENSE00001105678.2"  ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17"  ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10"  ; havana_transcript "OTTHUMT00000130705.3"  ; hgnc_id "HGNC:30453"  ; level 2 ; orig_coord_info "chr17,15563437,15563448,-"  ; protein_id "ENSP00000225576.3"  ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7"  ; transcript_name "TVP23C-201"  ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4	HAVANA	mRNA	1052	15760	.	+	.	FI_gene_label "TVP23C^ENSG00000175106.17"  ; ID "TVP23C--CDRT4^ENST00000225576.7"  ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17"  ; ccdsid "CCDS11170.1"  ; exon_id "ENSE00001105678.2"  ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17"  ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10"  ; havana_transcript "OTTHUMT00000130705.3"  ; hgnc_id "HGNC:30453"  ; level 2 ; orig_coord_info "chr17,15563437,15563448,-"  ; protein_id "ENSP00000225576.3"  ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7"  ; transcript_name "TVP23C-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
TVP23C--CDRT4	HAVANA	gene	19889	25887	.	+	.	FI_gene_label "CDRT4^ENSG00000239704.11"  ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11"  ; ccdsid "CCDS73995.1"  ; exon_id "ENSE00003735347.1"  ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11"  ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14"  ; havana_transcript "OTTHUMT00000130383.9"  ; hgnc_id "HGNC:14383"  ; level 2 ; orig_coord_info "chr17,15440208,15440238,-"  ; protein_id "ENSP00000482523.1"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5"  ; transcript_name "CDRT4-204"  ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4	HAVANA	mRNA	19889	25887	.	+	.	FI_gene_label "CDRT4^ENSG00000239704.11"  ; ID "TVP23C--CDRT4^ENST00000619038.5"  ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11"  ; ccdsid "CCDS73995.1"  ; exon_id "ENSE00003735347.1"  ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11"  ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14"  ; havana_transcript "OTTHUMT00000130383.9"  ; hgnc_id "HGNC:14383"  ; level 2 ; orig_coord_info "chr17,15440208,15440238,-"  ; protein_id "ENSP00000482523.1"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5"  ; transcript_name "CDRT4-204"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
AC092807.3--DDAH1	HAVANA	gene	1101	8302	.	+	.	FI_gene_label "AC092807.3^ENSG00000282057.1"  ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1"  ; exon_id "ENSE00001891111.1"  ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1"  ; gene_name "AC092807.3"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6"  ; havana_transcript "OTTHUMT00000029193.2"  ; level 2 ; orig_coord_info "chr1,85577984,85578150,-"  ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5"  ; transcript_name "AC092807.3-203"  ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1	HAVANA	RNA	1101	8302	.	+	.	FI_gene_label "AC092807.3^ENSG00000282057.1"  ; ID "AC092807.3--DDAH1^ENST00000467530.5"  ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1"  ; exon_id "ENSE00001891111.1"  ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1"  ; gene_name "AC092807.3"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6"  ; havana_transcript "OTTHUMT00000029193.2"  ; level 2 ; orig_coord_info "chr1,85577984,85578150,-"  ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5"  ; transcript_name "AC092807.3-203"  ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created: 
AP5B1--OR4D8P	HAVANA	gene	11080	12009	.	+	.	FI_gene_label "OR4D8P^ENSG00000204989.3"  ; ID "AP5B1--OR4D8P^OR4D8P^ENSG00000204989.3"  ; exon_id "ENSE00001773381.1"  ; exon_number 1 ; gene_id "AP5B1--OR4D8P^OR4D8P^ENSG00000204989.3"  ; gene_name OR4D8P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000154282.1"  ; havana_transcript "OTTHUMT00000334692.1"  ; hgnc_id "HGNC:15177"  ; level 2 ; ont "PGO:0000005"  ; orig_coord_info "chr11,59491652,59492581,+"  ; tag basic ; transcript_id "AP5B1--OR4D8P^ENST00000431137.1"  ; transcript_name "OR4D8P-201"  ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AP5B1--OR4D8P	HAVANA	RNA	11080	12009	.	+	.	FI_gene_label "OR4D8P^ENSG00000204989.3"  ; ID "AP5B1--OR4D8P^ENST00000431137.1"  ; Parent "AP5B1--OR4D8P^OR4D8P^ENSG00000204989.3"  ; exon_id "ENSE00001773381.1"  ; exon_number 1 ; gene_id "AP5B1--OR4D8P^OR4D8P^ENSG00000204989.3"  ; gene_name OR4D8P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000154282.1"  ; havana_transcript "OTTHUMT00000334692.1"  ; hgnc_id "HGNC:15177"  ; level 2 ; ont "PGO:0000005"  ; orig_coord_info "chr11,59491652,59492581,+"  ; tag basic ; transcript_id "AP5B1--OR4D8P^ENST00000431137.1"  ; transcript_name "OR4D8P-201"  ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created: 
CAMTA1--AL008626.1	HAVANA	gene	40749	42370	.	+	.	FI_gene_label "AL008626.1^ENSG00000230687.1"  ; ID "CAMTA1--AL008626.1^AL008626.1^ENSG00000230687.1"  ; exon_id "ENSE00001658353.1"  ; exon_number 1 ; gene_id "CAMTA1--AL008626.1^AL008626.1^ENSG00000230687.1"  ; gene_name "AL008626.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000034947.1"  ; havana_transcript "OTTHUMT00000084593.1"  ; level 2 ; orig_coord_info "chr1,175204756,175204849,-"  ; tag basic ; transcript_id "CAMTA1--AL008626.1^ENST00000412357.1"  ; transcript_name "AL008626.1-201"  ; transcript_support_level 2 ; transcript_type lncRNA
CAMTA1--AL008626.1	HAVANA	RNA	40749	42370	.	+	.	FI_gene_label "AL008626.1^ENSG00000230687.1"  ; ID "CAMTA1--AL008626.1^ENST00000412357.1"  ; Parent "CAMTA1--AL008626.1^AL008626.1^ENSG00000230687.1"  ; exon_id "ENSE00001658353.1"  ; exon_number 1 ; gene_id "CAMTA1--AL008626.1^AL008626.1^ENSG00000230687.1"  ; gene_name "AL008626.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000034947.1"  ; havana_transcript "OTTHUMT00000084593.1"  ; level 2 ; orig_coord_info "chr1,175204756,175204849,-"  ; tag basic ; transcript_id "CAMTA1--AL008626.1^ENST00000412357.1"  ; transcript_name "AL008626.1-201"  ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created: 
CAMTA1--RPS29P4	HAVANA	gene	40749	40909	.	+	.	FI_gene_label "RPS29P4^ENSG00000233946.2"  ; ID "CAMTA1--RPS29P4^RPS29P4^ENSG00000233946.2"  ; exon_id "ENSE00001775796.2"  ; exon_number 1 ; gene_id "CAMTA1--RPS29P4^RPS29P4^ENSG00000233946.2"  ; gene_name RPS29P4 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000034881.2"  ; havana_transcript "OTTHUMT00000084421.2"  ; hgnc_id "HGNC:35908"  ; level 1 ; ont "PGO:0000004"  ; orig_coord_info "chr1,175297080,175297240,+"  ; tag pseudo_consens basic ; transcript_id "CAMTA1--RPS29P4^ENST00000414733.2"  ; transcript_name "RPS29P4-201"  ; transcript_support_level NA ; transcript_type processed_pseudogene
CAMTA1--RPS29P4	HAVANA	RNA	40749	40909	.	+	.	FI_gene_label "RPS29P4^ENSG00000233946.2"  ; ID "CAMTA1--RPS29P4^ENST00000414733.2"  ; Parent "CAMTA1--RPS29P4^RPS29P4^ENSG00000233946.2"  ; exon_id "ENSE00001775796.2"  ; exon_number 1 ; gene_id "CAMTA1--RPS29P4^RPS29P4^ENSG00000233946.2"  ; gene_name RPS29P4 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000034881.2"  ; havana_transcript "OTTHUMT00000084421.2"  ; hgnc_id "HGNC:35908"  ; level 1 ; ont "PGO:0000004"  ; orig_coord_info "chr1,175297080,175297240,+"  ; tag pseudo_consens basic ; transcript_id "CAMTA1--RPS29P4^ENST00000414733.2"  ; transcript_name "RPS29P4-201"  ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created: 
FBXO25--AC240565.1	HAVANA	gene	26102	34357	.	+	.	FI_gene_label "AC240565.1^ENSG00000280136.2"  ; ID "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2"  ; exon_id "ENSE00003756821.1"  ; exon_number 1 ; gene_id "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2"  ; gene_name "AC240565.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2"  ; havana_transcript "OTTHUMT00000479189.2"  ; level 2 ; orig_coord_info "chr17,118383,118578,-"  ; tag not_best_in_genome_evidence basic ; transcript_id "FBXO25--AC240565.1^ENST00000624936.2"  ; transcript_name "AC240565.1-201"  ; transcript_support_level 5 ; transcript_type lncRNA
FBXO25--AC240565.1	HAVANA	RNA	26102	34357	.	+	.	FI_gene_label "AC240565.1^ENSG00000280136.2"  ; ID "FBXO25--AC240565.1^ENST00000624936.2"  ; Parent "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2"  ; exon_id "ENSE00003756821.1"  ; exon_number 1 ; gene_id "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2"  ; gene_name "AC240565.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2"  ; havana_transcript "OTTHUMT00000479189.2"  ; level 2 ; orig_coord_info "chr17,118383,118578,-"  ; tag not_best_in_genome_evidence basic ; transcript_id "FBXO25--AC240565.1^ENST00000624936.2"  ; transcript_name "AC240565.1-201"  ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created: 
NOC2L--RPL31P13	HAVANA	gene	17116	17485	.	+	.	FI_gene_label "RPL31P13^ENSG00000228646.3"  ; ID "NOC2L--RPL31P13^RPL31P13^ENSG00000228646.3"  ; exon_id "ENSE00001831338.1"  ; exon_number 1 ; gene_id "NOC2L--RPL31P13^RPL31P13^ENSG00000228646.3"  ; gene_name RPL31P13 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000037067.1"  ; havana_transcript "OTTHUMT00000090003.1"  ; hgnc_id "HGNC:35598"  ; level 1 ; ont "PGO:0000004"  ; orig_coord_info "chr1,213428708,213429077,-"  ; tag pseudo_consens basic ; transcript_id "NOC2L--RPL31P13^ENST00000484151.1"  ; transcript_name "RPL31P13-201"  ; transcript_support_level NA ; transcript_type processed_pseudogene
NOC2L--RPL31P13	HAVANA	RNA	17116	17485	.	+	.	FI_gene_label "RPL31P13^ENSG00000228646.3"  ; ID "NOC2L--RPL31P13^ENST00000484151.1"  ; Parent "NOC2L--RPL31P13^RPL31P13^ENSG00000228646.3"  ; exon_id "ENSE00001831338.1"  ; exon_number 1 ; gene_id "NOC2L--RPL31P13^RPL31P13^ENSG00000228646.3"  ; gene_name RPL31P13 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000037067.1"  ; havana_transcript "OTTHUMT00000090003.1"  ; hgnc_id "HGNC:35598"  ; level 1 ; ont "PGO:0000004"  ; orig_coord_info "chr1,213428708,213429077,-"  ; tag pseudo_consens basic ; transcript_id "NOC2L--RPL31P13^ENST00000484151.1"  ; transcript_name "RPL31P13-201"  ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created: 
TCF4--HNRNPA1P57	HAVANA	gene	71065	73594	.	+	.	FI_gene_label "HNRNPA1P57^ENSG00000237442.3"  ; ID "TCF4--HNRNPA1P57^HNRNPA1P57^ENSG00000237442.3"  ; exon_id "ENSE00001703605.1"  ; exon_number 1 ; gene_id "TCF4--HNRNPA1P57^HNRNPA1P57^ENSG00000237442.3"  ; gene_name HNRNPA1P57 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000152297.3"  ; havana_transcript "OTTHUMT00000470771.1"  ; hgnc_id "HGNC:48787"  ; level 2 ; orig_coord_info "chr2,41143780,41143958,+"  ; tag basic ; transcript_id "TCF4--HNRNPA1P57^ENST00000431359.1"  ; transcript_name "HNRNPA1P57-201"  ; transcript_support_level 4 ; transcript_type processed_transcript
TCF4--HNRNPA1P57	HAVANA	RNA	71065	73594	.	+	.	FI_gene_label "HNRNPA1P57^ENSG00000237442.3"  ; ID "TCF4--HNRNPA1P57^ENST00000431359.1"  ; Parent "TCF4--HNRNPA1P57^HNRNPA1P57^ENSG00000237442.3"  ; exon_id "ENSE00001703605.1"  ; exon_number 1 ; gene_id "TCF4--HNRNPA1P57^HNRNPA1P57^ENSG00000237442.3"  ; gene_name HNRNPA1P57 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000152297.3"  ; havana_transcript "OTTHUMT00000470771.1"  ; hgnc_id "HGNC:48787"  ; level 2 ; orig_coord_info "chr2,41143780,41143958,+"  ; tag basic ; transcript_id "TCF4--HNRNPA1P57^ENST00000431359.1"  ; transcript_name "HNRNPA1P57-201"  ; transcript_support_level 4 ; transcript_type processed_transcript
L1 and L2 created: 
TLK2--AC240565.1	HAVANA	gene	40046	48301	.	+	.	FI_gene_label "AC240565.1^ENSG00000280136.2"  ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; exon_id "ENSE00003756821.1"  ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; gene_name "AC240565.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2"  ; havana_transcript "OTTHUMT00000479189.2"  ; level 2 ; orig_coord_info "chr17,118383,118578,-"  ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2"  ; transcript_name "AC240565.1-201"  ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1	HAVANA	RNA	40046	48301	.	+	.	FI_gene_label "AC240565.1^ENSG00000280136.2"  ; ID "TLK2--AC240565.1^ENST00000624936.2"  ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; exon_id "ENSE00003756821.1"  ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; gene_name "AC240565.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2"  ; havana_transcript "OTTHUMT00000479189.2"  ; level 2 ; orig_coord_info "chr17,118383,118578,-"  ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2"  ; transcript_name "AC240565.1-201"  ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created: 
TLK2P1--AC110079.1	HAVANA	gene	1001	4192	.	+	.	FI_gene_label "TLK2P1^ENSG00000226049.3"  ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3"  ; exon_id "ENSE00002174619.1"  ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3"  ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1"  ; havana_transcript "OTTHUMT00000389700.1"  ; hgnc_id "HGNC:18048"  ; level 1 ; ont "PGO:0000004"  ; orig_coord_info "chr17,34036681,34039872,-"  ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1"  ; transcript_name "TLK2P1-201"  ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1	HAVANA	RNA	1001	4192	.	+	.	FI_gene_label "TLK2P1^ENSG00000226049.3"  ; ID "TLK2P1--AC110079.1^ENST00000530992.1"  ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3"  ; exon_id "ENSE00002174619.1"  ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3"  ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1"  ; havana_transcript "OTTHUMT00000389700.1"  ; hgnc_id "HGNC:18048"  ; level 1 ; ont "PGO:0000004"  ; orig_coord_info "chr17,34036681,34039872,-"  ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1"  ; transcript_name "TLK2P1-201"  ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created: 
TLK2P1--AC110079.1	HAVANA	gene	7193	19707	.	+	.	FI_gene_label "AC110079.1^ENSG00000260404.3"  ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3"  ; exon_id "ENSE00002625896.1"  ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3"  ; gene_name "AC110079.1"  ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4"  ; havana_transcript "OTTHUMT00000364170.2"  ; level 2 ; orig_coord_info "chr4,118591773,118591895,+"  ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2"  ; transcript_name "AC110079.1-201"  ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1	HAVANA	RNA	7193	19707	.	+	.	FI_gene_label "AC110079.1^ENSG00000260404.3"  ; ID "TLK2P1--AC110079.1^ENST00000567913.2"  ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3"  ; exon_id "ENSE00002625896.1"  ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3"  ; gene_name "AC110079.1"  ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4"  ; havana_transcript "OTTHUMT00000364170.2"  ; level 2 ; orig_coord_info "chr4,118591773,118591895,+"  ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2"  ; transcript_name "AC110079.1-201"  ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created: 
TUFT1--AL049825.1	HAVANA	gene	17604	21957	.	+	.	FI_gene_label "AL049825.1^ENSG00000285698.1"  ; ID "TUFT1--AL049825.1^AL049825.1^ENSG00000285698.1"  ; exon_id "ENSE00003832325.1"  ; exon_number 1 ; gene_id "TUFT1--AL049825.1^AL049825.1^ENSG00000285698.1"  ; gene_name "AL049825.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000193219.1"  ; havana_transcript "OTTHUMT00000500488.1"  ; level 2 ; orig_coord_info "chr1,115283550,115283763,-"  ; tag basic ; transcript_id "TUFT1--AL049825.1^ENST00000649888.1"  ; transcript_name "AL049825.1-201"  ; transcript_type lncRNA
TUFT1--AL049825.1	HAVANA	RNA	17604	21957	.	+	.	FI_gene_label "AL049825.1^ENSG00000285698.1"  ; ID "TUFT1--AL049825.1^ENST00000649888.1"  ; Parent "TUFT1--AL049825.1^AL049825.1^ENSG00000285698.1"  ; exon_id "ENSE00003832325.1"  ; exon_number 1 ; gene_id "TUFT1--AL049825.1^AL049825.1^ENSG00000285698.1"  ; gene_name "AL049825.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000193219.1"  ; havana_transcript "OTTHUMT00000500488.1"  ; level 2 ; orig_coord_info "chr1,115283550,115283763,-"  ; tag basic ; transcript_id "TUFT1--AL049825.1^ENST00000649888.1"  ; transcript_name "AL049825.1-201"  ; transcript_type lncRNA
488 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------

--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------

--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------

------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------

------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------

----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------

----------------------------- Check10: check utrs ------------------------------
997 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------

------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------

------------------------ Check12: all level1 locations -------------------------
We fixed 39 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------

---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
                  ------ End checks (done in 0 second) ------                   


GFF3 file parsed