Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/eb1b4bc33e6f99dbd09d96c103560c/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/84508860ad6918a3e43bdb6fcf4e88/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/84508860ad6918a3e43bdb6fcf4e88/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 224693978
unpaired = 3798721
MERGED PAIRED END READS = 224693978
MATES PROCESSED = 453186677
TOTAL READS     = 228492699
DISTINCT READS  = 5.77721e+07
DISTINCT COUNTS = 930
MAX COUNT       = 568656
COUNTS OF 1     = 1.61232e+07
MAX TERMS       = 100
OBSERVED COUNTS (568657)
1	16123224
2	11025617
3	8303004
4	6119867
5	4410376
6	3133819
7	2212080
8	1564439
9	1116468
10	806562
11	590226
12	439794
13	334000
14	259207
15	203722
16	162599
17	131943
18	107912
19	90124
20	74911
21	63705
22	53757
23	45535
24	39423
25	33865
26	29448
27	25755
28	22407
29	19514
30	17293
31	15473
32	13624
33	11960
34	10848
35	9995
36	9090
37	8281
38	7610
39	6845
40	6388
41	5757
42	5339
43	4968
44	4743
45	4350
46	3922
47	3709
48	3418
49	3191
50	2997
51	2899
52	2729
53	2587
54	2437
55	2185
56	2123
57	2032
58	1812
59	1793
60	1716
61	1615
62	1484
63	1419
64	1382
65	1267
66	1287
67	1175
68	1146
69	1075
70	1061
71	1048
72	982
73	937
74	849
75	734
76	768
77	786
78	735
79	761
80	656
81	677
82	632
83	599
84	630
85	586
86	518
87	499
88	544
89	446
90	447
91	461
92	415
93	444
94	409
95	407
96	379
97	382
98	371
99	328
100	365
101	343
102	354
103	316
104	289
105	305
106	275
107	265
108	245
109	242
110	273
111	244
112	233
113	221
114	237
115	210
116	234
117	190
118	183
119	183
120	190
121	166
122	178
123	180
124	152
125	171
126	144
127	141
128	173
129	149
130	142
131	134
132	136
133	140
134	153
135	163
136	129
137	108
138	122
139	135
140	136
141	120
142	103
143	98
144	115
145	96
146	118
147	86
148	100
149	102
150	82
151	89
152	87
153	82
154	84
155	89
156	95
157	81
158	68
159	71
160	74
161	63
162	91
163	84
164	68
165	65
166	53
167	59
168	77
169	63
170	67
171	70
172	55
173	72
174	69
175	68
176	44
177	61
178	40
179	51
180	54
181	40
182	62
183	49
184	50
185	69
186	54
187	40
188	53
189	46
190	41
191	43
192	43
193	53
194	43
195	47
196	52
197	47
198	42
199	40
200	46
201	41
202	51
203	38
204	35
205	46
206	32
207	38
208	40
209	36
210	40
211	39
212	27
213	29
214	30
215	31
216	28
217	32
218	32
219	23
220	32
221	26
222	32
223	36
224	26
225	24
226	20
227	29
228	23
229	21
230	29
231	20
232	24
233	26
234	21
235	24
236	26
237	16
238	21
239	23
240	23
241	24
242	23
243	23
244	17
245	11
246	18
247	26
248	28
249	27
250	12
251	21
252	21
253	17
254	20
255	18
256	11
257	13
258	22
259	20
260	14
261	13
262	15
263	15
264	19
265	18
266	17
267	11
268	14
269	15
270	13
271	12
272	21
273	18
274	17
275	19
276	19
277	12
278	9
279	22
280	20
281	15
282	8
283	12
284	11
285	11
286	13
287	18
288	13
289	15
290	4
291	10
292	9
293	10
294	8
295	14
296	7
297	20
298	14
299	9
300	10
301	7
302	8
303	17
304	5
305	10
306	9
307	11
308	7
309	8
310	7
311	8
312	8
313	13
314	12
315	7
316	11
317	3
318	4
319	17
320	11
321	16
322	12
323	10
324	8
325	5
326	10
327	11
328	11
329	11
330	10
331	14
332	9
333	6
334	5
335	10
336	4
337	2
338	5
339	10
340	8
341	10
342	4
343	8
344	9
345	5
346	5
347	8
348	7
349	4
350	6
351	8
352	6
353	6
354	10
355	6
356	6
357	7
358	6
359	8
360	7
361	3
362	7
363	8
364	6
365	5
366	9
367	6
368	7
369	3
370	9
371	7
372	8
373	9
374	8
375	4
376	5
377	6
378	10
379	3
380	6
381	6
382	6
383	5
384	2
385	6
386	3
387	7
388	8
389	6
390	7
391	3
392	9
393	8
394	6
395	1
396	2
397	11
398	4
399	4
400	6
401	1
402	6
403	5
404	7
405	7
406	7
407	3
408	2
409	4
410	4
411	5
412	2
413	2
414	5
415	5
416	7
417	6
418	2
419	4
420	3
421	6
422	7
423	4
424	6
425	8
426	2
427	1
428	5
429	2
430	6
431	5
432	5
433	5
434	6
435	1
436	6
437	4
438	4
439	3
440	3
441	5
442	3
443	1
444	1
445	3
446	5
447	5
448	3
449	2
450	3
451	4
452	5
453	3
454	1
455	3
456	3
457	4
458	2
459	4
460	6
461	2
462	4
463	3
464	1
465	7
466	7
467	1
468	4
469	3
470	7
471	4
472	3
473	2
474	4
475	6
476	4
477	2
478	1
479	5
480	2
481	7
482	1
483	3
484	4
485	1
486	3
487	3
488	3
489	2
490	2
491	1
492	1
493	5
494	3
495	1
496	4
497	3
498	6
499	3
500	2
501	5
502	2
503	4
504	3
505	3
506	4
507	2
508	3
509	3
510	5
511	2
512	4
513	6
514	5
515	3
516	2
517	3
518	3
519	1
520	2
521	2
522	1
523	7
524	3
525	1
526	5
527	3
528	1
529	2
530	4
531	1
532	2
533	2
534	2
535	3
536	2
537	2
538	1
540	1
541	5
542	2
543	4
544	1
545	3
546	2
547	4
548	3
549	1
550	1
551	3
552	6
554	3
555	1
556	3
558	3
559	2
560	3
561	4
562	2
563	2
564	2
565	3
566	2
569	2
570	1
571	1
572	2
573	1
574	2
576	5
577	3
578	1
579	1
581	4
582	1
583	1
584	2
585	2
586	1
589	1
591	1
592	1
593	2
594	4
596	1
597	1
598	3
599	3
600	1
601	2
602	1
603	2
605	1
606	1
611	1
614	3
615	2
617	4
618	1
619	1
620	2
621	2
623	1
624	1
625	1
627	2
629	2
631	2
632	2
633	2
634	2
635	1
636	1
637	3
638	1
641	2
642	2
643	3
644	1
645	2
646	1
648	1
649	3
651	1
652	1
654	2
655	1
658	1
663	2
664	3
665	3
666	1
667	1
668	1
669	1
670	2
671	1
672	1
673	1
674	2
675	2
676	2
678	1
679	3
680	3
681	1
683	2
684	1
685	2
687	1
689	1
690	1
691	2
693	1
694	1
695	1
697	1
700	1
701	1
703	1
704	2
707	1
708	2
709	1
710	1
712	5
714	1
715	3
718	1
719	1
723	1
727	1
728	1
729	2
730	2
732	1
733	2
736	2
737	2
738	2
739	1
740	1
742	1
743	2
744	1
745	1
749	1
751	1
752	2
754	1
756	1
761	1
764	3
766	2
768	1
770	2
772	1
774	1
775	2
776	2
779	1
780	2
781	1
782	1
784	1
785	1
786	3
788	2
795	1
796	1
797	1
799	1
800	2
802	3
803	1
808	1
809	1
812	1
814	1
817	1
819	2
821	3
822	2
823	1
825	1
826	1
827	1
828	1
829	2
830	2
831	1
833	2
834	1
835	1
837	3
838	2
839	1
840	1
841	1
842	2
844	1
848	1
850	1
852	1
853	1
854	2
860	3
863	1
866	1
867	2
868	1
875	1
876	1
878	2
881	1
886	2
887	1
894	1
898	1
900	1
902	1
907	1
908	1
910	1
920	1
922	1
927	2
929	2
933	2
934	1
936	1
937	1
940	1
941	1
942	1
946	1
948	1
953	1
954	1
956	1
958	1
961	1
965	1
966	1
967	1
968	1
970	1
976	1
983	2
984	2
987	2
988	1
989	1
990	2
993	1
994	1
999	1
1000	1
1003	1
1009	1
1015	1
1019	2
1020	1
1025	1
1029	1
1042	1
1043	1
1047	1
1054	1
1056	1
1059	1
1062	1
1067	1
1069	1
1070	1
1072	1
1099	1
1103	1
1109	1
1119	2
1128	1
1133	2
1134	1
1141	2
1142	1
1143	1
1145	1
1154	1
1166	1
1181	1
1191	1
1198	1
1202	1
1203	1
1218	1
1228	1
1230	2
1233	1
1236	1
1237	1
1238	1
1239	1
1244	1
1247	1
1259	1
1274	1
1282	1
1294	1
1303	1
1315	1
1318	1
1327	1
1364	1
1368	2
1378	2
1396	1
1402	1
1422	1
1429	1
1430	1
1437	1
1464	1
1467	1
1476	1
1478	1
1479	1
1484	1
1492	1
1509	2
1511	1
1516	1
1535	1
1541	1
1543	1
1576	1
1577	1
1631	2
1674	1
1714	1
1751	1
1762	1
1772	1
1777	1
1804	1
1832	1
1927	1
1935	1
1967	1
1975	1
1977	1
1981	1
1996	1
2004	1
2010	1
2025	1
2078	1
2099	1
2117	1
2119	1
2122	1
2131	1
2155	1
2157	1
2167	1
2169	1
2178	1
2222	1
2239	1
2297	1
2319	1
2326	1
2372	1
2384	1
2419	1
2498	1
2567	1
2839	1
2918	1
3368	1
3384	1
4094	1
4263	1
4290	1
4394	1
4464	1
4620	1
4789	1
5473	1
15166	1
568656	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..._._..._......._........_..._.._..........._...._.........._._........
......._..._......_......._..._........_.....
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]