Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/d74ca8b57fe8404555c555043ea354/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/08d30666edfad0bf1418b89870c7d1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/08d30666edfad0bf1418b89870c7d1/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/9a38257650726e881f0ec9a9296bd5/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory