Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/a701d644132e2c3f12a236ed5916fd/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/e33678adb89b97b291e97cce5bdfb8/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/e33678adb89b97b291e97cce5bdfb8/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/91d000ed37d75c7376bf00a5852fe8/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
FSIP1--AC013652.1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
CTTN--AC136759.1
starfusion
UBE2D3--AC098487.1
arriba
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
LINC01953--IKZF2
arriba
AC079610.2--IKZF2
arriba
THBS1--AC013652.1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
SHANK2--AC136759.1
arriba
IKZF2--LINC01953
arriba
PCDHA3--PCDHAC2
arriba
PCDHA3--PCDHAC1
arriba
AC092807.3--DDAH1
arriba
PCDHA3--PCDHA13
arriba
0%| | 0/18 [00:00<?, ?it/s]
Processing FSIP1--AC013652.1: 0%| | 0/18 [00:00<?, ?it/s]
Processing FSIP1--AC013652.1: 6%|▌ | 1/18 [00:00<00:01, 9.24it/s]
Processing TLK2P1--AC110079.1: 6%|▌ | 1/18 [00:00<00:01, 9.24it/s]
Processing TLK2P1--AC110079.1: 11%|█ | 2/18 [00:00<00:01, 9.48it/s]
Processing CTTN--AC136759.1: 11%|█ | 2/18 [00:00<00:01, 9.48it/s]
Processing CTTN--AC136759.1: 17%|█▋ | 3/18 [00:00<00:01, 9.55it/s]
Processing UBE2D3--AC098487.1: 17%|█▋ | 3/18 [00:00<00:01, 9.55it/s]
Processing UBE2D3--AC098487.1: 22%|██▏ | 4/18 [00:00<00:01, 9.59it/s]
Processing STX16--NPEPL1: 22%|██▏ | 4/18 [00:00<00:01, 9.59it/s]
Processing STX16--NPEPL1: 28%|██▊ | 5/18 [00:00<00:01, 9.61it/s]
Processing TVP23C--CDRT4: 28%|██▊ | 5/18 [00:00<00:01, 9.61it/s]
Processing TVP23C--CDRT4: 33%|███▎ | 6/18 [00:00<00:01, 9.62it/s]
Processing LINC01953--IKZF2: 33%|███▎ | 6/18 [00:00<00:01, 9.62it/s]
Processing LINC01953--IKZF2: 39%|███▉ | 7/18 [00:00<00:01, 9.63it/s]
Processing AC079610.2--IKZF2: 39%|███▉ | 7/18 [00:00<00:01, 9.63it/s]
Processing AC079610.2--IKZF2: 44%|████▍ | 8/18 [00:00<00:01, 9.62it/s]
Processing THBS1--AC013652.1: 44%|████▍ | 8/18 [00:00<00:01, 9.62it/s]
Processing THBS1--AC013652.1: 50%|█████ | 9/18 [00:00<00:00, 9.62it/s]
Processing PCDHA4--PCDHAC2: 50%|█████ | 9/18 [00:00<00:00, 9.62it/s]
Processing PCDHA4--PCDHAC2: 56%|█████▌ | 10/18 [00:01<00:00, 9.61it/s]
Processing PCDHA4--PCDHAC1: 56%|█████▌ | 10/18 [00:01<00:00, 9.61it/s]
Processing PCDHA4--PCDHAC1: 61%|██████ | 11/18 [00:01<00:00, 9.61it/s]
Processing PCDHA4--PCDHA13: 61%|██████ | 11/18 [00:01<00:00, 9.61it/s]
Processing PCDHA4--PCDHA13: 67%|██████▋ | 12/18 [00:01<00:00, 9.62it/s]
Processing SHANK2--AC136759.1: 67%|██████▋ | 12/18 [00:01<00:00, 9.62it/s]
Processing SHANK2--AC136759.1: 72%|███████▏ | 13/18 [00:01<00:00, 9.63it/s]
Processing IKZF2--LINC01953: 72%|███████▏ | 13/18 [00:01<00:00, 9.63it/s]
Processing IKZF2--LINC01953: 78%|███████▊ | 14/18 [00:01<00:00, 9.63it/s]
Processing PCDHA3--PCDHAC2: 78%|███████▊ | 14/18 [00:01<00:00, 9.63it/s]
Processing PCDHA3--PCDHAC2: 83%|████████▎ | 15/18 [00:01<00:00, 9.63it/s]
Processing PCDHA3--PCDHAC1: 83%|████████▎ | 15/18 [00:01<00:00, 9.63it/s]
Processing PCDHA3--PCDHAC1: 89%|████████▉ | 16/18 [00:01<00:00, 9.63it/s]
Processing AC092807.3--DDAH1: 89%|████████▉ | 16/18 [00:01<00:00, 9.63it/s]
Processing AC092807.3--DDAH1: 94%|█████████▍| 17/18 [00:01<00:00, 9.64it/s]
Processing PCDHA3--PCDHA13: 94%|█████████▍| 17/18 [00:01<00:00, 9.64it/s]
Processing PCDHA3--PCDHA13: 100%|██████████| 18/18 [00:01<00:00, 9.62it/s]
Processing PCDHA3--PCDHA13: 100%|██████████| 18/18 [00:01<00:00, 9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory