Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/a701d644132e2c3f12a236ed5916fd/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/e33678adb89b97b291e97cce5bdfb8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/e33678adb89b97b291e97cce5bdfb8/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/91d000ed37d75c7376bf00a5852fe8/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
FSIP1--AC013652.1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
CTTN--AC136759.1
starfusion
UBE2D3--AC098487.1
arriba
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
LINC01953--IKZF2
arriba
AC079610.2--IKZF2
arriba
THBS1--AC013652.1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
SHANK2--AC136759.1
arriba
IKZF2--LINC01953
arriba
PCDHA3--PCDHAC2
arriba
PCDHA3--PCDHAC1
arriba
AC092807.3--DDAH1
arriba
PCDHA3--PCDHA13
arriba

  0%|          | 0/18 [00:00<?, ?it/s]
Processing FSIP1--AC013652.1:   0%|          | 0/18 [00:00<?, ?it/s]
Processing FSIP1--AC013652.1:   6%|▌         | 1/18 [00:00<00:01,  9.24it/s]
Processing TLK2P1--AC110079.1:   6%|▌         | 1/18 [00:00<00:01,  9.24it/s]
Processing TLK2P1--AC110079.1:  11%|█         | 2/18 [00:00<00:01,  9.48it/s]
Processing CTTN--AC136759.1:  11%|█         | 2/18 [00:00<00:01,  9.48it/s]  
Processing CTTN--AC136759.1:  17%|█▋        | 3/18 [00:00<00:01,  9.55it/s]
Processing UBE2D3--AC098487.1:  17%|█▋        | 3/18 [00:00<00:01,  9.55it/s]
Processing UBE2D3--AC098487.1:  22%|██▏       | 4/18 [00:00<00:01,  9.59it/s]
Processing STX16--NPEPL1:  22%|██▏       | 4/18 [00:00<00:01,  9.59it/s]     
Processing STX16--NPEPL1:  28%|██▊       | 5/18 [00:00<00:01,  9.61it/s]
Processing TVP23C--CDRT4:  28%|██▊       | 5/18 [00:00<00:01,  9.61it/s]
Processing TVP23C--CDRT4:  33%|███▎      | 6/18 [00:00<00:01,  9.62it/s]
Processing LINC01953--IKZF2:  33%|███▎      | 6/18 [00:00<00:01,  9.62it/s]
Processing LINC01953--IKZF2:  39%|███▉      | 7/18 [00:00<00:01,  9.63it/s]
Processing AC079610.2--IKZF2:  39%|███▉      | 7/18 [00:00<00:01,  9.63it/s]
Processing AC079610.2--IKZF2:  44%|████▍     | 8/18 [00:00<00:01,  9.62it/s]
Processing THBS1--AC013652.1:  44%|████▍     | 8/18 [00:00<00:01,  9.62it/s]
Processing THBS1--AC013652.1:  50%|█████     | 9/18 [00:00<00:00,  9.62it/s]
Processing PCDHA4--PCDHAC2:  50%|█████     | 9/18 [00:00<00:00,  9.62it/s]  
Processing PCDHA4--PCDHAC2:  56%|█████▌    | 10/18 [00:01<00:00,  9.61it/s]
Processing PCDHA4--PCDHAC1:  56%|█████▌    | 10/18 [00:01<00:00,  9.61it/s]
Processing PCDHA4--PCDHAC1:  61%|██████    | 11/18 [00:01<00:00,  9.61it/s]
Processing PCDHA4--PCDHA13:  61%|██████    | 11/18 [00:01<00:00,  9.61it/s]
Processing PCDHA4--PCDHA13:  67%|██████▋   | 12/18 [00:01<00:00,  9.62it/s]
Processing SHANK2--AC136759.1:  67%|██████▋   | 12/18 [00:01<00:00,  9.62it/s]
Processing SHANK2--AC136759.1:  72%|███████▏  | 13/18 [00:01<00:00,  9.63it/s]
Processing IKZF2--LINC01953:  72%|███████▏  | 13/18 [00:01<00:00,  9.63it/s]  
Processing IKZF2--LINC01953:  78%|███████▊  | 14/18 [00:01<00:00,  9.63it/s]
Processing PCDHA3--PCDHAC2:  78%|███████▊  | 14/18 [00:01<00:00,  9.63it/s] 
Processing PCDHA3--PCDHAC2:  83%|████████▎ | 15/18 [00:01<00:00,  9.63it/s]
Processing PCDHA3--PCDHAC1:  83%|████████▎ | 15/18 [00:01<00:00,  9.63it/s]
Processing PCDHA3--PCDHAC1:  89%|████████▉ | 16/18 [00:01<00:00,  9.63it/s]
Processing AC092807.3--DDAH1:  89%|████████▉ | 16/18 [00:01<00:00,  9.63it/s]
Processing AC092807.3--DDAH1:  94%|█████████▍| 17/18 [00:01<00:00,  9.64it/s]
Processing PCDHA3--PCDHA13:  94%|█████████▍| 17/18 [00:01<00:00,  9.64it/s]  
Processing PCDHA3--PCDHA13: 100%|██████████| 18/18 [00:01<00:00,  9.62it/s]
Processing PCDHA3--PCDHA13: 100%|██████████| 18/18 [00:01<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory