File Info
- Filename
- aih-tih-sc-00d05f-R1_A23WJ53LT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/e33678adb89b97b291e97cce5bdfb8/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.fusions.csv
- Size
- 4.2 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-00d05f-R1_A23WJ53LT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| FSIP1--AC013652.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:39600845#chr15:39071608,reading-frame: .,type: deletion,split_reads1: 56,split_reads2: 12,discordant_mates: 0,coverage1: 3188,coverage2: 51,confidence: high | position: chr15:39600845:-#chr15:39071608:-,junction_reads: 71,spanning_reads: 0,ffmp: 0.3105 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 13,spanning_reads: 0,ffmp: 0.0538 | ||
| CTTN--AC136759.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:70425401:+#chr11:49783823:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0525 | ||
| UBE2D3--AC098487.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:102809672#chr4:102447164,reading-frame: out-of-frame,type: inversion/5'-5',split_reads1: 125,split_reads2: 6,discordant_mates: 1,coverage1: 12735,coverage2: 181,confidence: high | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 28,split_reads2: 28,discordant_mates: 1,coverage1: 1611,coverage2: 488,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 27,split_reads2: 24,discordant_mates: 0,coverage1: 782,coverage2: 350,confidence: high | |
| LINC01953--IKZF2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:213214518#chr2:213148644,reading-frame: .,type: deletion/read-through,split_reads1: 13,split_reads2: 32,discordant_mates: 3,coverage1: 241,coverage2: 2920,confidence: high | ||
| AC079610.2--IKZF2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:213214518#chr2:213148644,reading-frame: .,type: deletion/read-through,split_reads1: 13,split_reads2: 32,discordant_mates: 3,coverage1: 241,coverage2: 2920,confidence: high | ||
| THBS1--AC013652.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:39587321#chr15:39071608,reading-frame: .,type: deletion/3'-3',split_reads1: 34,split_reads2: 9,discordant_mates: 1,coverage1: 5302,coverage2: 51,confidence: high | ||
| PCDHA4--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 11,split_reads2: 17,discordant_mates: 0,coverage1: 406,coverage2: 775,confidence: high | ||
| PCDHA4--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 11,split_reads2: 17,discordant_mates: 0,coverage1: 406,coverage2: 775,confidence: high | ||
| PCDHA4--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 11,split_reads2: 17,discordant_mates: 0,coverage1: 406,coverage2: 775,confidence: high | ||
| SHANK2--AC136759.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:70698688#chr11:49703509,reading-frame: out-of-frame,type: deletion/5'-5',split_reads1: 14,split_reads2: 8,discordant_mates: 0,coverage1: 1877,coverage2: 40,confidence: high | ||
| IKZF2--LINC01953 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:213147708#chr2:213159281,reading-frame: out-of-frame,type: duplication,split_reads1: 10,split_reads2: 4,discordant_mates: 0,coverage1: 6898,coverage2: 36,confidence: high | ||
| PCDHA3--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140803591#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 2,split_reads2: 9,discordant_mates: 0,coverage1: 166,coverage2: 775,confidence: high | ||
| PCDHA3--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140803591#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 2,split_reads2: 9,discordant_mates: 0,coverage1: 166,coverage2: 775,confidence: high | ||
| AC092807.3--DDAH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 5,split_reads2: 6,discordant_mates: 0,coverage1: 47,coverage2: 350,confidence: high | ||
| PCDHA3--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140803591#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 2,split_reads2: 9,discordant_mates: 0,coverage1: 166,coverage2: 775,confidence: high |
19 rows