Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/2c84af6f25d71699c8c0e8ee2cf81d/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/a90cf0adae203c8bbdda224295c6a9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/a90cf0adae203c8bbdda224295c6a9/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 293932804
unpaired = 4209769
MERGED PAIRED END READS = 293932804
MATES PROCESSED = 592075377
TOTAL READS     = 298142573
DISTINCT READS  = 1.38523e+08
DISTINCT COUNTS = 1210
MAX COUNT       = 881875
COUNTS OF 1     = 7.48966e+07
MAX TERMS       = 100
OBSERVED COUNTS (881876)
1	74896583
2	32089019
3	14633381
4	7052439
5	3633113
6	2008200
7	1187304
8	745321
9	493299
10	341573
11	246859
12	184599
13	141776
14	111999
15	89443
16	73581
17	60486
18	51146
19	43502
20	37707
21	32111
22	28323
23	24599
24	22113
25	19506
26	17515
27	15855
28	14232
29	12883
30	11736
31	10856
32	9792
33	8864
34	8171
35	7659
36	7090
37	6544
38	6117
39	5718
40	5329
41	5086
42	4683
43	4425
44	4117
45	3806
46	3643
47	3469
48	3402
49	3086
50	2969
51	2806
52	2676
53	2510
54	2398
55	2292
56	2114
57	1983
58	1949
59	1933
60	1916
61	1715
62	1650
63	1597
64	1527
65	1378
66	1439
67	1352
68	1365
69	1215
70	1210
71	1106
72	1113
73	1161
74	1045
75	1076
76	965
77	892
78	951
79	849
80	837
81	810
82	795
83	781
84	731
85	710
86	684
87	697
88	653
89	686
90	605
91	628
92	592
93	539
94	570
95	571
96	554
97	461
98	514
99	557
100	503
101	447
102	441
103	446
104	402
105	435
106	451
107	426
108	409
109	362
110	375
111	376
112	354
113	337
114	335
115	334
116	311
117	291
118	337
119	291
120	309
121	275
122	272
123	274
124	270
125	251
126	254
127	257
128	246
129	229
130	234
131	233
132	232
133	211
134	208
135	239
136	215
137	199
138	230
139	200
140	204
141	186
142	190
143	185
144	178
145	173
146	177
147	190
148	172
149	165
150	169
151	156
152	160
153	154
154	154
155	162
156	151
157	141
158	151
159	135
160	116
161	121
162	143
163	133
164	141
165	134
166	133
167	143
168	135
169	112
170	117
171	125
172	114
173	106
174	120
175	97
176	117
177	117
178	108
179	96
180	111
181	100
182	118
183	86
184	90
185	103
186	83
187	88
188	98
189	108
190	84
191	90
192	73
193	72
194	90
195	95
196	68
197	79
198	82
199	68
200	84
201	77
202	70
203	79
204	52
205	53
206	67
207	68
208	65
209	62
210	62
211	55
212	56
213	65
214	66
215	72
216	64
217	54
218	58
219	71
220	64
221	67
222	55
223	57
224	49
225	60
226	61
227	54
228	51
229	45
230	58
231	56
232	50
233	35
234	46
235	56
236	38
237	50
238	56
239	43
240	47
241	44
242	34
243	45
244	51
245	39
246	38
247	39
248	37
249	44
250	40
251	52
252	27
253	35
254	46
255	37
256	37
257	39
258	40
259	31
260	38
261	39
262	34
263	40
264	41
265	36
266	27
267	37
268	35
269	33
270	23
271	22
272	42
273	41
274	46
275	30
276	24
277	36
278	26
279	35
280	28
281	33
282	35
283	29
284	37
285	25
286	28
287	34
288	28
289	22
290	28
291	19
292	21
293	22
294	20
295	27
296	24
297	30
298	23
299	26
300	21
301	23
302	24
303	27
304	20
305	27
306	25
307	25
308	26
309	24
310	18
311	31
312	26
313	25
314	19
315	17
316	18
317	30
318	19
319	20
320	19
321	16
322	16
323	28
324	16
325	24
326	25
327	16
328	25
329	22
330	17
331	18
332	16
333	13
334	25
335	17
336	17
337	26
338	28
339	14
340	17
341	16
342	16
343	20
344	20
345	11
346	9
347	14
348	21
349	14
350	14
351	14
352	15
353	16
354	13
355	14
356	15
357	18
358	15
359	11
360	22
361	11
362	15
363	16
364	10
365	20
366	12
367	13
368	11
369	13
370	6
371	6
372	17
373	18
374	17
375	11
376	14
377	17
378	16
379	8
380	11
381	15
382	14
383	13
384	11
385	8
386	15
387	14
388	11
389	17
390	12
391	11
392	12
393	10
394	11
395	7
396	15
397	8
398	10
399	9
400	13
401	10
402	7
403	13
404	11
405	15
406	10
407	7
408	9
409	7
410	6
411	11
412	7
413	7
414	10
415	8
416	11
417	14
418	9
419	5
420	10
421	14
422	10
423	8
424	10
425	5
426	7
427	4
428	8
429	12
430	7
431	8
432	11
433	11
434	5
435	7
436	3
437	13
438	7
439	10
440	8
441	5
442	9
443	5
444	3
445	9
446	7
447	5
448	7
449	10
450	5
451	7
452	6
453	10
454	9
455	6
456	5
457	4
458	4
459	15
460	7
461	5
462	4
463	4
464	11
465	5
466	4
467	9
468	9
469	6
470	9
471	9
472	3
473	11
474	10
475	6
476	4
477	7
478	6
479	8
480	6
481	3
482	9
483	7
484	10
485	9
486	5
487	4
488	3
489	7
490	6
491	7
492	7
493	5
494	8
495	2
496	6
497	3
498	9
499	6
500	4
501	10
502	4
503	8
504	5
505	3
506	12
507	3
508	7
509	7
510	4
511	5
512	3
513	5
514	3
515	4
516	5
517	6
518	2
519	6
520	6
521	9
522	6
523	5
524	3
525	6
526	5
527	4
528	6
529	6
530	6
531	8
532	5
533	5
534	2
535	6
536	4
537	5
538	3
539	4
540	4
541	4
542	5
543	4
544	2
545	7
546	2
547	5
549	4
550	3
551	4
552	6
553	2
554	3
555	5
557	4
558	4
559	6
560	7
561	5
562	3
563	5
564	4
565	3
566	7
567	3
568	1
569	7
570	3
571	4
572	5
573	6
574	3
575	6
576	2
577	7
578	4
579	1
580	7
581	4
582	8
583	4
584	6
585	1
586	3
587	4
588	2
589	6
590	4
591	2
592	4
593	3
594	4
595	5
596	4
597	3
598	7
599	3
600	3
601	3
602	2
603	2
604	3
605	4
606	1
607	2
608	4
609	4
610	3
611	2
612	6
613	1
614	4
615	1
616	2
617	5
618	2
619	5
620	3
621	1
622	5
623	3
624	1
625	2
626	3
627	5
628	3
629	2
631	6
632	3
633	3
634	2
635	4
636	2
637	3
638	3
639	1
640	1
641	4
642	4
643	3
644	2
647	4
648	2
649	2
650	4
651	3
652	5
653	1
655	1
657	1
658	5
659	2
660	4
661	2
662	3
663	4
664	4
666	3
668	1
669	1
670	3
671	2
672	1
673	3
674	3
675	3
676	2
677	5
678	3
679	1
680	1
681	6
682	5
683	3
684	1
685	1
686	3
687	4
688	1
689	3
690	4
691	3
692	1
693	1
694	2
695	3
696	4
697	2
698	1
699	2
700	3
701	2
702	2
703	3
704	2
705	4
706	1
707	2
708	4
709	3
711	1
712	1
713	2
714	5
715	1
716	2
717	4
718	5
719	2
720	5
721	3
722	1
724	1
725	2
726	5
727	1
728	2
729	2
730	1
731	2
732	1
733	3
734	3
735	2
736	2
737	3
738	1
739	1
740	2
741	3
742	1
743	1
744	4
745	1
746	2
747	1
749	1
750	4
751	2
752	2
753	3
754	7
755	3
756	5
757	1
758	1
759	3
760	2
761	1
762	1
764	2
765	1
766	1
767	2
768	4
769	4
770	1
771	3
772	3
773	1
774	5
775	1
776	2
777	4
778	1
779	3
780	3
781	1
783	3
784	2
785	3
786	1
787	1
788	2
789	2
790	2
791	1
792	6
793	3
795	1
796	2
797	2
798	1
799	1
800	3
801	1
802	3
804	1
805	3
807	3
808	1
809	2
810	1
811	3
812	2
813	1
814	1
816	1
817	2
820	2
823	2
824	3
825	5
826	4
827	2
828	1
829	1
830	2
833	1
835	1
837	2
838	3
839	3
842	1
843	2
844	4
845	1
847	2
849	2
852	3
853	1
857	1
858	6
861	1
862	3
863	1
864	2
865	2
866	2
867	1
868	1
870	2
872	1
873	1
874	1
875	1
876	4
877	1
878	3
879	1
882	1
883	2
886	3
887	1
888	1
889	1
892	2
893	2
895	3
896	2
899	1
901	1
903	3
905	1
906	2
907	2
908	2
910	1
911	1
912	1
914	2
915	2
916	1
918	1
919	1
920	1
921	1
922	1
924	1
926	1
927	2
928	1
929	2
930	1
931	1
934	2
935	1
938	3
945	1
946	1
948	1
949	2
951	2
953	1
955	1
956	2
957	1
958	2
961	5
963	1
968	2
969	1
972	2
974	1
976	2
977	2
978	1
979	3
981	1
982	2
984	3
986	1
990	1
994	1
995	1
996	1
998	3
1000	2
1001	1
1003	2
1004	1
1008	1
1009	1
1010	1
1012	3
1014	2
1016	2
1017	1
1018	1
1019	1
1020	1
1023	1
1024	1
1025	2
1026	2
1027	1
1028	1
1031	1
1038	3
1040	2
1041	1
1042	1
1044	1
1048	2
1050	2
1052	1
1053	1
1054	1
1058	2
1060	2
1061	1
1062	1
1063	1
1067	1
1070	1
1073	1
1078	1
1079	2
1082	1
1083	1
1085	1
1087	1
1093	1
1094	1
1095	1
1096	1
1100	1
1101	2
1103	2
1104	1
1106	1
1109	1
1111	1
1112	1
1113	1
1120	1
1121	1
1124	1
1126	1
1127	1
1129	2
1130	3
1132	1
1133	1
1137	2
1139	1
1143	1
1144	2
1148	1
1152	1
1153	1
1155	1
1157	1
1159	1
1161	1
1162	1
1163	1
1164	1
1166	1
1168	1
1170	1
1176	1
1177	1
1179	2
1180	1
1183	1
1184	3
1186	1
1189	1
1202	2
1203	1
1204	1
1205	1
1206	1
1208	1
1212	1
1214	1
1218	1
1219	1
1225	1
1228	2
1231	1
1239	1
1241	1
1247	1
1254	1
1256	1
1261	1
1262	1
1265	1
1266	1
1268	1
1270	1
1271	1
1277	1
1280	1
1281	1
1283	1
1286	1
1291	1
1295	1
1296	1
1297	1
1305	1
1306	1
1307	1
1308	2
1311	1
1318	1
1320	1
1327	1
1329	1
1334	2
1337	1
1338	1
1342	1
1343	1
1344	1
1350	1
1360	1
1372	2
1375	1
1376	2
1383	1
1384	1
1388	1
1399	1
1402	1
1405	2
1409	1
1410	1
1415	1
1425	3
1430	1
1431	1
1438	1
1440	1
1442	1
1443	2
1448	1
1453	1
1455	1
1457	1
1458	1
1459	1
1475	1
1476	1
1482	1
1487	1
1489	1
1490	1
1492	1
1498	1
1499	1
1500	1
1506	1
1507	1
1525	1
1530	4
1534	1
1536	1
1537	1
1542	1
1545	1
1560	1
1575	1
1580	1
1585	1
1586	1
1588	1
1593	1
1597	1
1599	1
1602	1
1608	1
1609	1
1611	1
1613	1
1633	1
1648	1
1655	1
1658	1
1667	1
1672	1
1674	1
1680	1
1682	1
1688	1
1703	1
1710	1
1721	1
1734	1
1748	1
1761	1
1778	1
1788	1
1789	1
1822	1
1823	1
1829	1
1854	2
1863	1
1878	1
1880	1
1887	1
1891	1
1910	1
1921	1
1937	1
1945	1
1953	1
1969	1
1975	1
1993	1
2001	1
2026	1
2031	1
2033	1
2060	1
2102	1
2118	1
2130	1
2134	1
2139	1
2147	1
2198	1
2200	1
2204	1
2227	1
2245	1
2249	1
2308	1
2322	1
2331	1
2332	1
2378	1
2389	1
2437	1
2452	1
2478	1
2493	1
2522	1
2556	1
2609	1
2614	1
2628	1
2648	1
2654	1
2661	1
2708	1
2724	1
2822	1
2830	1
2876	1
2907	1
2914	1
2933	1
2940	1
3108	1
3133	1
3141	1
3331	1
3332	1
3425	1
3454	1
3498	1
3517	1
3562	1
3807	1
3809	1
3844	1
4815	1
4973	1
5300	1
7031	1
7569	1
9045	1
14576	1
32943	1
881875	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.___........__....._.__...._..._.._.._._.._.._...__......_.__..._.._....
.__......__.._....._........_...._....._.__..._...._........_.._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]