Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/92659a8deb1e8f4defaffdcfad216f/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/74851375aa6c30c3d4ef059c3bbe25/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/74851375aa6c30c3d4ef059c3bbe25/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory