File Info

Filename
aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/0f1951112dfac24f522694b2b0ca18/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:51:24
                             Started mapping on |	Jun 08 07:54:05
                                    Finished on |	Jun 08 08:37:18
       Mapping speed, Million of reads per hour |	338.64

                          Number of input reads |	243917684
                      Average input read length |	263
                                    UNIQUE READS:
                   Uniquely mapped reads number |	233156600
                        Uniquely mapped reads % |	95.59%
                          Average mapped length |	263.17
                       Number of splices: Total |	277055477
            Number of splices: Annotated (sjdb) |	272959649
                       Number of splices: GT/AG |	274545397
                       Number of splices: GC/AG |	1805233
                       Number of splices: AT/AC |	232509
               Number of splices: Non-canonical |	472338
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.11
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.58
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6725672
             % of reads mapped to multiple loci |	2.76%
        Number of reads mapped to too many loci |	355114
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	415128
       % of reads unmapped: too many mismatches |	0.17%
            Number of reads unmapped: too short |	1689524
                 % of reads unmapped: too short |	0.69%
                Number of reads unmapped: other |	218360
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2603262
                            % of chimeric reads |	1.07%