Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/c6b914776742968a7a6f9a3a481803/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/bcdad11f66d79b2d3efbe1db021db4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/bcdad11f66d79b2d3efbe1db021db4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/634be424d910e31b5cd0f516a38eb6/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 196450831
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	196450831
Known Splicing Events:	194484376
Partial Novel Splicing Events:	1260943
Novel Splicing Events:	631330
Filtered Splicing Events:	74182

Total splicing  Junctions:	319436
Known Splicing Junctions:	215240
Partial Novel Splicing Junctions:	63997
Novel Splicing Junctions:	40199

===================================================================
Create BED file ...
Create Interact file ...