File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/fcee2fadc4480b4f2c067f66b8ba58/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 10 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 181
  Pass (FILTER=PASS): 9 (5.0%)
  Fail (FILTER=FAIL): 172 (95.0%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 10
  All 10 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 32
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 21
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 20
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 15
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 14
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 12
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 11
  confidence_below_min(low<high): 9
  confidence_below_min(medium<high): 7
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 6
  confidence_below_min(medium<high);aih_curated_blacklist: 4
  confidence_below_min(low<high);aih_curated_blacklist: 3
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 2

Breakdown by confidence:
  high: 9 pass, 5 fail (total: 14)
  low: 0 pass, 107 fail (total: 107)
  medium: 0 pass, 60 fail (total: 60)
Arriba filter: 181 rows -> 9 PASS; wrote aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.arriba.fusions.filter_summary.txt