Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/c067a454aeaffb2159143fa484b029/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/60a7c8311cd7fa13a030b27953e3a1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/60a7c8311cd7fa13a030b27953e3a1/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory