Done.
-parsing GTF file: /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1.gtf
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.XJibhaNoI4/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1_1.fastp.fastq.gz /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.XJibhaNoI4/fi_workdir/aih-tih-sc-284856-R1_A23WJ53LT4_1.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.XJibhaNoI4/fi_workdir/aih-tih-sc-284856-R1_A23WJ53LT4_1.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
* Running CMD: mv Aligned.sortedByCoord.out.bam aih-tih-sc-284856-R1_A23WJ53LT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index aih-tih-sc-284856-R1_A23WJ53LT4_1.star.sortedByCoord.out.bam
08:46:55 : INFO : Done.
-parsing GTF file: /tmp/nxf.XJibhaNoI4/fi_workdir/aih-tih-sc-284856-R1_A23WJ53LT4_1.gtf
-parsing /tmp/nxf.XJibhaNoI4/fi_workdir/aih-tih-sc-284856-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam

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[1520000]   -done parsing /tmp/nxf.XJibhaNoI4/fi_workdir/aih-tih-sc-284856-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 26,
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 114,
          'num_hits: 6 != num_counted_on_fusion_contigs 5 ' => 5,
          'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 152,
          'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 39,
          'excessive soft clipping' => 10756,
          'num genes matched < 2' => 16,
          'num_hits: 7 != num_counted_on_fusion_contigs 6 ' => 12,
          'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 40,
          'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 156,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 564,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 1402,
          'seq-similar region overlap' => 81,
          ' ** passed ** ' => 5979,
          'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 21,
          'per_id < 96' => 6745,
          'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 264,
          'small anchor length' => 32,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 2250,
          'exons hit < 2' => 34,
          'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 258,
          'low complexity anchor region' => 8
        };
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.XJibhaNoI4/fi_workdir/aih-tih-sc-284856-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

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[3000]   -fusion SPANNING read extraction for scaff: AC015911.9--SLFN12L

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[23000]   -fusion SPANNING read extraction for scaff: ATXN7L1--NAMPT

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[8000]   -fusion SPANNING read extraction for scaff: CAMK2G--C10orf55

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[34000]   -fusion SPANNING read extraction for scaff: CAMK2G--VCL

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[41000]   -fusion SPANNING read extraction for scaff: CRTC1--IFI30

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[25000]   -fusion SPANNING read extraction for scaff: DYNC2I2--SH3GLB2

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[642000]   -fusion SPANNING read extraction for scaff: EEF1G--AHNAK

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[31000]   -fusion SPANNING read extraction for scaff: EFCAB14--CYP4A11

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[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
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[20000]   
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[26000]   
[27000]   
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[30000]   
[31000]   
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[33000]   
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[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   -fusion SPANNING read extraction for scaff: EIF4B--KRT3

[1000]   
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[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
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[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   -fusion SPANNING read extraction for scaff: ERBIN--SREK1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   -fusion SPANNING read extraction for scaff: FAM222B--RBL1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   -fusion SPANNING read extraction for scaff: FXR1--SOX2-OT

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   -fusion SPANNING read extraction for scaff: GFPT1--RAB10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   -fusion SPANNING read extraction for scaff: HECTD4--VCL

[1000]   
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[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
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[18000]   
[19000]   
[20000]   
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[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   -fusion SPANNING read extraction for scaff: HECTD4--CASC11

[1000]   
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[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   -fusion SPANNING read extraction for scaff: LINC00921--ELOB

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: LRRC28--VSTM2B

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
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[20000]   
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[28000]   
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[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   -fusion SPANNING read extraction for scaff: MAP4--FBXW12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
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[23000]   
[24000]   
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[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   -fusion SPANNING read extraction for scaff: NTRK3--NEPRO

[1000]   
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[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
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[20000]   
[21000]   
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[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   -fusion SPANNING read extraction for scaff: NTRK3--ABI3BP

[1000]   
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[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: PCDHA6--PCDHAC1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   -fusion SPANNING read extraction for scaff: PCDHA6--PCDHAC2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   -fusion SPANNING read extraction for scaff: PCDHA6--PCDHA13

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   -fusion SPANNING read extraction for scaff: PLA2G6--FAM227A

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   -fusion SPANNING read extraction for scaff: RAB10--GFPT1

[1000]   
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[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
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[14000]   
[15000]   
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[18000]   
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[20000]   
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[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
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[71000]   
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[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   -fusion SPANNING read extraction for scaff: SETD2--SMARCC1

[1000]   
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[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   -fusion SPANNING read extraction for scaff: STK4--KCNK15-AS1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   -fusion SPANNING read extraction for scaff: TRIM59--IFT80

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   -fusion SPANNING read extraction for scaff: ZNF251--PIGF

[1000]   
[2000]   
[3000]   
[4000]   -fusion SPANNING read extraction for scaff: ZNF528--ZNF610

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   -fusion SPANNING read extraction for scaff: ZNF528--ZNF880

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
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[20000]   
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[25000]   
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[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   -fusion SPANNING read extraction for scaff: ZNF7--EPAS1
-filtered reads reasons: $VAR1 = {
          'seq similar region alignment' => 10983,
          'lacks exon overlap' => 28053
        };
EM: Starting log likelihood: -7029.019043
EM: Round [1] log likelihood: -7026.826809
EM: Round [2] log likelihood: -7026.824489
EM: Round [3] log likelihood: -7026.822781
EM: Round [4] log likelihood: -7026.821082
EM: Round [5] log likelihood: -7026.819392
EM: Round [6] log likelihood: -7026.817710
EM: Round [7] log likelihood: -7026.816038
EM: Round [8] log likelihood: -7026.814373
EM: Round [9] log likelihood: -7026.812717
EM: Round [10] log likelihood: -7026.811070
EM: Round [11] log likelihood: -7026.809431
EM: Round [12] log likelihood: -7026.807801
EM: Round [13] log likelihood: -7026.806179
EM: Round [14] log likelihood: -7026.804565
EM: Round [15] log likelihood: -7026.802959
EM: Round [16] log likelihood: -7026.801361
EM: Round [17] log likelihood: -7026.799772
EM: Round [18] log likelihood: -7026.798190
EM: Round [19] log likelihood: -7026.796616
EM: Round [20] log likelihood: -7026.795051
EM: Round [21] log likelihood: -7026.793493
EM: Round [22] log likelihood: -7026.791943
EM: Round [23] log likelihood: -7026.790401
EM: Round [24] log likelihood: -7026.788866
EM: Round [25] log likelihood: -7026.787340
EM: Round [26] log likelihood: -7026.785820
EM: Round [27] log likelihood: -7026.784309
EM: Round [28] log likelihood: -7026.782805
EM: Round [29] log likelihood: -7026.781308
EM: Round [30] log likelihood: -7026.779819
EM: Round [31] log likelihood: -7026.778337
EM: Round [32] log likelihood: -7026.776863
EM: Round [33] log likelihood: -7026.775395
EM: Round [34] log likelihood: -7026.773935
EM: Round [35] log likelihood: -7026.772483
EM: Round [36] log likelihood: -7026.771037
EM: Round [37] log likelihood: -7026.769598
EM: Round [38] log likelihood: -7026.768167
EM: Round [39] log likelihood: -7026.766742
EM: Round [40] log likelihood: -7026.765325
EM: Round [41] log likelihood: -7026.763914
EM: Round [42] log likelihood: -7026.762511
EM: Round [43] log likelihood: -7026.761114
EM: Round [44] log likelihood: -7026.759723
EM: Round [45] log likelihood: -7026.758340
EM: Round [46] log likelihood: -7026.756963
EM: Round [47] log likelihood: -7026.755593
EM: Round [48] log likelihood: -7026.754230
EM: Round [49] log likelihood: -7026.752873
EM: Round [50] log likelihood: -7026.751523
EM: Round [51] log likelihood: -7026.750179
EM: Round [52] log likelihood: -7026.748842
EM: Round [53] log likelihood: -7026.747511
EM: Round [54] log likelihood: -7026.746187
EM: Round [55] log likelihood: -7026.744868
EM: Round [56] log likelihood: -7026.743556
EM: Round [57] log likelihood: -7026.742251
EM: Round [58] log likelihood: -7026.740952
EM: Round [59] log likelihood: -7026.739658
EM: Round [60] log likelihood: -7026.738371
EM: Round [61] log likelihood: -7026.737090
EM: Round [62] log likelihood: -7026.735816
EM: Round [63] log likelihood: -7026.734547
EM: Round [64] log likelihood: -7026.733284
EM: Round [65] log likelihood: -7026.732027
EM: Round [66] log likelihood: -7026.730776
EM: Round [67] log likelihood: -7026.729531
EM: Round [68] log likelihood: -7026.728292
EM: Round [69] log likelihood: -7026.727059
EM: Round [70] log likelihood: -7026.725831
EM: Round [71] log likelihood: -7026.724610
EM: Round [72] log likelihood: -7026.723394
EM: Round [73] log likelihood: -7026.722183
EM: Round [74] log likelihood: -7026.720979
EM: Round [75] log likelihood: -7026.719780
EM: Round [76] log likelihood: -7026.718586
EM: Round [77] log likelihood: -7026.717398
EM: Round [78] log likelihood: -7026.716216
EM: Round [79] log likelihood: -7026.715039
EM: Round [80] log likelihood: -7026.713868
EM: Round [81] log likelihood: -7026.712702
EM: Round [82] log likelihood: -7026.711541
EM: Round [83] log likelihood: -7026.710386
EM: Round [84] log likelihood: -7026.709236
EM: Round [85] log likelihood: -7026.708091
EM: Round [86] log likelihood: -7026.706952
EM: Round [87] log likelihood: -7026.705818
EM: Round [88] log likelihood: -7026.704689
EM: Round [89] log likelihood: -7026.703566
EM: Round [90] log likelihood: -7026.702447
EM: Round [91] log likelihood: -7026.701334
EM: Round [92] log likelihood: -7026.700226
EM: Round [93] log likelihood: -7026.699122
EM: Round [94] log likelihood: -7026.698024
EM: Round [95] log likelihood: -7026.696931
EM: Round [96] log likelihood: -7026.695843
EM: Round [97] log likelihood: -7026.694760
EM: Round [98] log likelihood: -7026.693682
EM: Round [99] log likelihood: -7026.692608
EM: Round [100] log likelihood: -7026.691540
EM: Round [101] log likelihood: -7026.690476
EM: Round [102] log likelihood: -7026.689417
EM: Round [103] log likelihood: -7026.688363
EM: Round [104] log likelihood: -7026.687314
EM: Round [105] log likelihood: -7026.686269
EM: Round [106] log likelihood: -7026.685230
EM: Round [107] log likelihood: -7026.684194
EM: Round [108] log likelihood: -7026.683164
EM: Round [109] log likelihood: -7026.682138
EM: Round [110] log likelihood: -7026.681117
EM: Round [111] log likelihood: -7026.680100
EM: Round [112] log likelihood: -7026.679088
EM: Round [113] log likelihood: -7026.678080
EM: Round [114] log likelihood: -7026.677077
EM: Round [115] log likelihood: -7026.676079
EM: Round [116] log likelihood: -7026.675085
EM: Round [117] log likelihood: -7026.674095
EM: Round [118] log likelihood: -7026.673110
EM: Round [119] log likelihood: -7026.672129
EM: Round [120] log likelihood: -7026.671152
EM: Round [121] log likelihood: -7026.670180
EM: Round [122] log likelihood: -7026.669212
EM: Round [123] log likelihood: -7026.668249
EM: Round [124] log likelihood: -7026.667289
EM: Round [125] log likelihood: -7026.666334
EM: Round [126] log likelihood: -7026.665383
EM: Round [127] log likelihood: -7026.664437
EM: Round [128] log likelihood: -7026.663494
EM: Round [129] log likelihood: -7026.662556
EM: Round [130] log likelihood: -7026.661622
EM: Round [131] log likelihood: -7026.660692
EM: Round [132] log likelihood: -7026.659766
EM: Round [133] log likelihood: -7026.658844
EM: Round [134] log likelihood: -7026.657926
EM: Round [135] log likelihood: -7026.657012
EM: Round [136] log likelihood: -7026.656102
EM: Round [137] log likelihood: -7026.655197
EM: Round [138] log likelihood: -7026.654295
EM: Round [139] log likelihood: -7026.653397
EM: Round [140] log likelihood: -7026.652503
EM: Round [141] log likelihood: -7026.651613
EM: Round [142] log likelihood: -7026.650726
EM: Round [143] log likelihood: -7026.649844
EM: Round [144] log likelihood: -7026.648965
EM: Round [145] log likelihood: -7026.648091
EM: Round [146] log likelihood: -7026.647220
EM: Round [147] log likelihood: -7026.646352
EM: Round [148] log likelihood: -7026.645489
EM: Round [149] log likelihood: -7026.644629
EM: Round [150] log likelihood: -7026.643773
EM: Round [151] log likelihood: -7026.642921
EM: Round [152] log likelihood: -7026.642073
EM: Round [153] log likelihood: -7026.641228
EM: Round [154] log likelihood: -7026.640386
EM: Round [155] log likelihood: -7026.639549
EM: Round [156] log likelihood: -7026.638715
EM: Round [157] log likelihood: -7026.637884
EM: Round [158] log likelihood: -7026.637057
EM: Round [159] log likelihood: -7026.636234
EM: Round [160] log likelihood: -7026.635414
EM: Round [161] log likelihood: -7026.634598
EM: Round [162] log likelihood: -7026.633785
EM: Round [163] log likelihood: -7026.632976
EM: Round [164] log likelihood: -7026.632170
EM: Round [165] log likelihood: -7026.631368
EM: Round [166] log likelihood: -7026.630569
EM: Round [167] log likelihood: -7026.629773
EM: Round [168] log likelihood: -7026.628981
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EM: Round [630] log likelihood: -7026.462037
EM: Round [631] log likelihood: -7026.461903
EM: Round [632] log likelihood: -7026.461769
EM: Round [633] log likelihood: -7026.461636
EM: Round [634] log likelihood: -7026.461504
EM: Round [635] log likelihood: -7026.461372
EM: Round [636] log likelihood: -7026.461241
EM: Round [637] log likelihood: -7026.461110
EM: Round [638] log likelihood: -7026.460979
EM: Round [639] log likelihood: -7026.460849
EM: Round [640] log likelihood: -7026.460720
EM: Round [641] log likelihood: -7026.460590
EM: Round [642] log likelihood: -7026.460462
EM: Round [643] log likelihood: -7026.460334
EM: Round [644] log likelihood: -7026.460206
EM: Round [645] log likelihood: -7026.460079
EM: Round [646] log likelihood: -7026.459952
EM: Round [647] log likelihood: -7026.459825
EM: Round [648] log likelihood: -7026.459700
EM: Round [649] log likelihood: -7026.459574
EM: Round [650] log likelihood: -7026.459449
EM: Round [651] log likelihood: -7026.459325
EM: Round [652] log likelihood: -7026.459200
EM: Round [653] log likelihood: -7026.459077
EM: Round [654] log likelihood: -7026.458954
EM: Round [655] log likelihood: -7026.458831
EM: Round [656] log likelihood: -7026.458708
EM: Round [657] log likelihood: -7026.458587
EM: Round [658] log likelihood: -7026.458465
EM: Round [659] log likelihood: -7026.458344
EM: Round [660] log likelihood: -7026.458224
EM: Round [661] log likelihood: -7026.458103
EM: Round [662] log likelihood: -7026.457984
EM: Round [663] log likelihood: -7026.457864
EM: Round [664] log likelihood: -7026.457746
EM: Round [665] log likelihood: -7026.457627
EM: Round [666] log likelihood: -7026.457509
EM: Round [667] log likelihood: -7026.457392
EM: Round [668] log likelihood: -7026.457274
EM: Round [669] log likelihood: -7026.457158
EM: Round [670] log likelihood: -7026.457041
EM: Round [671] log likelihood: -7026.456926
EM: Round [672] log likelihood: -7026.456810
EM: Round [673] log likelihood: -7026.456695
EM: Round [674] log likelihood: -7026.456580
EM: Round [675] log likelihood: -7026.456466
EM: Round [676] log likelihood: -7026.456352
EM: Round [677] log likelihood: -7026.456239
EM: Round [678] log likelihood: -7026.456126
EM: Round [679] log likelihood: -7026.456013
EM: Round [680] log likelihood: -7026.455901
EM: Round [681] log likelihood: -7026.455789
EM: Round [682] log likelihood: -7026.455678
EM: Round [683] log likelihood: -7026.455567
EM: Round [684] log likelihood: -7026.455456
EM: Round [685] log likelihood: -7026.455346
EM: Round [686] log likelihood: -7026.455236
EM: Round [687] log likelihood: -7026.455127
EM: Round [688] log likelihood: -7026.455018
EM: Round [689] log likelihood: -7026.454909
EM: Round [690] log likelihood: -7026.454801
EM: Round [691] log likelihood: -7026.454693
EM: Round [692] log likelihood: -7026.454585
EM: Round [693] log likelihood: -7026.454478
EM: Round [694] log likelihood: -7026.454372
EM: Round [695] log likelihood: -7026.454265
EM: Round [696] log likelihood: -7026.454159
EM: Round [697] log likelihood: -7026.454054
EM: Round [698] log likelihood: -7026.453949
EM: Round [699] log likelihood: -7026.453844
EM: Round [700] log likelihood: -7026.453739
EM: Round [701] log likelihood: -7026.453635
EM: Round [702] log likelihood: -7026.453532
EM: Round [703] log likelihood: -7026.453428
EM: Round [704] log likelihood: -7026.453325
EM: Round [705] log likelihood: -7026.453223
EM: Round [706] log likelihood: -7026.453121
EM: Round [707] log likelihood: -7026.453019
EM: Round [708] log likelihood: -7026.452917
EM: Round [709] log likelihood: -7026.452816
EM: Round [710] log likelihood: -7026.452715
EM: Round [711] log likelihood: -7026.452615
EM: Round [712] log likelihood: -7026.452515
EM: Round [713] log likelihood: -7026.452415
EM: Stopping iterations at round 713 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1.consolidated.bam into /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1.consolidated.bam.read_coords

CMD: touch /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1.consolidated.bam.read_coords > /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1.consolidated.bam.frag_coords > /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.XJibhaNoI4/fi_workdir/aih-tih-sc-284856-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.XJibhaNoI4/fi_workdir/aih-tih-sc-284856-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.XJibhaNoI4/fi_workdir/aih-tih-sc-284856-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -6679.692470
EM: Round [1] log likelihood: -6678.451606
EM: Round [2] log likelihood: -6678.447648
EM: Round [3] log likelihood: -6678.444253
EM: Round [4] log likelihood: -6678.440881
EM: Round [5] log likelihood: -6678.437532
EM: Round [6] log likelihood: -6678.434206
EM: Round [7] log likelihood: -6678.430902
EM: Round [8] log likelihood: -6678.427621
EM: Round [9] log likelihood: -6678.424361
EM: Round [10] log likelihood: -6678.421124
EM: Round [11] log likelihood: -6678.417908
EM: Round [12] log likelihood: -6678.414714
EM: Round [13] log likelihood: -6678.411541
EM: Round [14] log likelihood: -6678.408388
EM: Round [15] log likelihood: -6678.405257
EM: Round [16] log likelihood: -6678.402146
EM: Round [17] log likelihood: -6678.399056
EM: Round [18] log likelihood: -6678.395986
EM: Round [19] log likelihood: -6678.392936
EM: Round [20] log likelihood: -6678.389905
EM: Round [21] log likelihood: -6678.386895
EM: Round [22] log likelihood: -6678.383903
EM: Round [23] log likelihood: -6678.380931
EM: Round [24] log likelihood: -6678.377978
EM: Round [25] log likelihood: -6678.375044
EM: Round [26] log likelihood: -6678.372129
EM: Round [27] log likelihood: -6678.369232
EM: Round [28] log likelihood: -6678.366354
EM: Round [29] log likelihood: -6678.363494
EM: Round [30] log likelihood: -6678.360652
EM: Round [31] log likelihood: -6678.357827
EM: Round [32] log likelihood: -6678.355021
EM: Round [33] log likelihood: -6678.352232
EM: Round [34] log likelihood: -6678.349460
EM: Round [35] log likelihood: -6678.346706
EM: Round [36] log likelihood: -6678.343969
EM: Round [37] log likelihood: -6678.341249
EM: Round [38] log likelihood: -6678.338545
EM: Round [39] log likelihood: -6678.335858
EM: Round [40] log likelihood: -6678.333188
EM: Round [41] log likelihood: -6678.330534
EM: Round [42] log likelihood: -6678.327896
EM: Round [43] log likelihood: -6678.325274
EM: Round [44] log likelihood: -6678.322669
EM: Round [45] log likelihood: -6678.320079
EM: Round [46] log likelihood: -6678.317504
EM: Round [47] log likelihood: -6678.314945
EM: Round [48] log likelihood: -6678.312402
EM: Round [49] log likelihood: -6678.309874
EM: Round [50] log likelihood: -6678.307360
EM: Round [51] log likelihood: -6678.304862
EM: Round [52] log likelihood: -6678.302379
EM: Round [53] log likelihood: -6678.299911
EM: Round [54] log likelihood: -6678.297457
EM: Round [55] log likelihood: -6678.295017
EM: Round [56] log likelihood: -6678.292592
EM: Round [57] log likelihood: -6678.290182
EM: Round [58] log likelihood: -6678.287785
EM: Round [59] log likelihood: -6678.285402
EM: Round [60] log likelihood: -6678.283034
EM: Round [61] log likelihood: -6678.280679
EM: Round [62] log likelihood: -6678.278337
EM: Round [63] log likelihood: -6678.276010
EM: Round [64] log likelihood: -6678.273696
EM: Round [65] log likelihood: -6678.271395
EM: Round [66] log likelihood: -6678.269107
EM: Round [67] log likelihood: -6678.266833
EM: Round [68] log likelihood: -6678.264571
EM: Round [69] log likelihood: -6678.262323
EM: Round [70] log likelihood: -6678.260087
EM: Round [71] log likelihood: -6678.257864
EM: Round [72] log likelihood: -6678.255654
EM: Round [73] log likelihood: -6678.253456
EM: Round [74] log likelihood: -6678.251271
EM: Round [75] log likelihood: -6678.249097
EM: Round [76] log likelihood: -6678.246937
EM: Round [77] log likelihood: -6678.244788
EM: Round [78] log likelihood: -6678.242651
EM: Round [79] log likelihood: -6678.240527
EM: Round [80] log likelihood: -6678.238414
EM: Round [81] log likelihood: -6678.236313
EM: Round [82] log likelihood: -6678.234223
EM: Round [83] log likelihood: -6678.232146
EM: Round [84] log likelihood: -6678.230079
EM: Round [85] log likelihood: -6678.228024
EM: Round [86] log likelihood: -6678.225981
EM: Round [87] log likelihood: -6678.223949
EM: Round [88] log likelihood: -6678.221927
EM: Round [89] log likelihood: -6678.219917
EM: Round [90] log likelihood: -6678.217918
EM: Round [91] log likelihood: -6678.215930
EM: Round [92] log likelihood: -6678.213953
EM: Round [93] log likelihood: -6678.211986
EM: Round [94] log likelihood: -6678.210030
EM: Round [95] log likelihood: -6678.208085
EM: Round [96] log likelihood: -6678.206150
EM: Round [97] log likelihood: -6678.204225
EM: Round [98] log likelihood: -6678.202311
EM: Round [99] log likelihood: -6678.200408
EM: Round [100] log likelihood: -6678.198514
EM: Round [101] log likelihood: -6678.196631
EM: Round [102] log likelihood: -6678.194757
EM: Round [103] log likelihood: -6678.192894
EM: Round [104] log likelihood: -6678.191041
EM: Round [105] log likelihood: -6678.189197
EM: Round [106] log likelihood: -6678.187363
EM: Round [107] log likelihood: -6678.185539
EM: Round [108] log likelihood: -6678.183725
EM: Round [109] log likelihood: -6678.181920
EM: Round [110] log likelihood: -6678.180124
EM: Round [111] log likelihood: -6678.178338
EM: Round [112] log likelihood: -6678.176562
EM: Round [113] log likelihood: -6678.174794
EM: Round [114] log likelihood: -6678.173036
EM: Round [115] log likelihood: -6678.171287
EM: Round [116] log likelihood: -6678.169548
EM: Round [117] log likelihood: -6678.167817
EM: Round [118] log likelihood: -6678.166095
EM: Round [119] log likelihood: -6678.164382
EM: Round [120] log likelihood: -6678.162678
EM: Round [121] log likelihood: -6678.160983
EM: Round [122] log likelihood: -6678.159297
EM: Round [123] log likelihood: -6678.157619
EM: Round [124] log likelihood: -6678.155950
EM: Round [125] log likelihood: -6678.154289
EM: Round [126] log likelihood: -6678.152637
EM: Round [127] log likelihood: -6678.150994
EM: Round [128] log likelihood: -6678.149358
EM: Round [129] log likelihood: -6678.147732
EM: Round [130] log likelihood: -6678.146113
EM: Round [131] log likelihood: -6678.144503
EM: Round [132] log likelihood: -6678.142900
EM: Round [133] log likelihood: -6678.141306
EM: Round [134] log likelihood: -6678.139720
EM: Round [135] log likelihood: -6678.138142
EM: Round [136] log likelihood: -6678.136572
EM: Round [137] log likelihood: -6678.135010
EM: Round [138] log likelihood: -6678.133455
EM: Round [139] log likelihood: -6678.131909
EM: Round [140] log likelihood: -6678.130370
EM: Round [141] log likelihood: -6678.128839
EM: Round [142] log likelihood: -6678.127316
EM: Round [143] log likelihood: -6678.125800
EM: Round [144] log likelihood: -6678.124291
EM: Round [145] log likelihood: -6678.122791
EM: Round [146] log likelihood: -6678.121297
EM: Round [147] log likelihood: -6678.119811
EM: Round [148] log likelihood: -6678.118333
EM: Round [149] log likelihood: -6678.116861
EM: Round [150] log likelihood: -6678.115397
EM: Round [151] log likelihood: -6678.113940
EM: Round [152] log likelihood: -6678.112491
EM: Round [153] log likelihood: -6678.111048
EM: Round [154] log likelihood: -6678.109613
EM: Round [155] log likelihood: -6678.108184
EM: Round [156] log likelihood: -6678.106763
EM: Round [157] log likelihood: -6678.105348
EM: Round [158] log likelihood: -6678.103941
EM: Round [159] log likelihood: -6678.102540
EM: Round [160] log likelihood: -6678.101146
EM: Round [161] log likelihood: -6678.099759
EM: Round [162] log likelihood: -6678.098378
EM: Round [163] log likelihood: -6678.097005
EM: Round [164] log likelihood: -6678.095637
EM: Round [165] log likelihood: -6678.094277
EM: Round [166] log likelihood: -6678.092923
EM: Round [167] log likelihood: -6678.091576
EM: Round [168] log likelihood: -6678.090235
EM: Round [169] log likelihood: -6678.088900
EM: Round [170] log likelihood: -6678.087572
EM: Round [171] log likelihood: -6678.086250
EM: Round [172] log likelihood: -6678.084935
EM: Round [173] log likelihood: -6678.083626
EM: Round [174] log likelihood: -6678.082323
EM: Round [175] log likelihood: -6678.081026
EM: Round [176] log likelihood: -6678.079736
EM: Round [177] log likelihood: -6678.078451
EM: Round [178] log likelihood: -6678.077173
EM: Round [179] log likelihood: -6678.075901
EM: Round [180] log likelihood: -6678.074635
EM: Round [181] log likelihood: -6678.073374
EM: Round [182] log likelihood: -6678.072120
EM: Round [183] log likelihood: -6678.070872
EM: Round [184] log likelihood: -6678.069629
EM: Round [185] log likelihood: -6678.068393
EM: Round [186] log likelihood: -6678.067162
EM: Round [187] log likelihood: -6678.065937
EM: Round [188] log likelihood: -6678.064718
EM: Round [189] log likelihood: -6678.063504
EM: Round [190] log likelihood: -6678.062296
EM: Round [191] log likelihood: -6678.061094
EM: Round [192] log likelihood: -6678.059898
EM: Round [193] log likelihood: -6678.058707
EM: Round [194] log likelihood: -6678.057521
EM: Round [195] log likelihood: -6678.056341
EM: Round [196] log likelihood: -6678.055167
EM: Round [197] log likelihood: -6678.053998
EM: Round [198] log likelihood: -6678.052834
EM: Round [199] log likelihood: -6678.051676
EM: Round [200] log likelihood: -6678.050523
EM: Round [201] log likelihood: -6678.049375
EM: Round [202] log likelihood: -6678.048233
EM: Round [203] log likelihood: -6678.047096
EM: Round [204] log likelihood: -6678.045964
EM: Round [205] log likelihood: -6678.044838
EM: Round [206] log likelihood: -6678.043716
EM: Round [207] log likelihood: -6678.042600
EM: Round [208] log likelihood: -6678.041489
EM: Round [209] log likelihood: -6678.040383
EM: Round [210] log likelihood: -6678.039282
EM: Round [211] log likelihood: -6678.038186
EM: Round [212] log likelihood: -6678.037095
EM: Round [213] log likelihood: -6678.036009
EM: Round [214] log likelihood: -6678.034928
EM: Round [215] log likelihood: -6678.033852
EM: Round [216] log likelihood: -6678.032781
EM: Round [217] log likelihood: -6678.031714
EM: Round [218] log likelihood: -6678.030653
EM: Round [219] log likelihood: -6678.029596
EM: Round [220] log likelihood: -6678.028544
EM: Round [221] log likelihood: -6678.027497
EM: Round [222] log likelihood: -6678.026454
EM: Round [223] log likelihood: -6678.025416
EM: Round [224] log likelihood: -6678.024383
EM: Round [225] log likelihood: -6678.023355
EM: Round [226] log likelihood: -6678.022331
EM: Round [227] log likelihood: -6678.021312
EM: Round [228] log likelihood: -6678.020297
EM: Round [229] log likelihood: -6678.019287
EM: Round [230] log likelihood: -6678.018281
EM: Round [231] log likelihood: -6678.017280
EM: Round [232] log likelihood: -6678.016283
EM: Round [233] log likelihood: -6678.015291
EM: Round [234] log likelihood: -6678.014303
EM: Round [235] log likelihood: -6678.013320
EM: Round [236] log likelihood: -6678.012341
EM: Round [237] log likelihood: -6678.011366
EM: Round [238] log likelihood: -6678.010396
EM: Round [239] log likelihood: -6678.009430
EM: Round [240] log likelihood: -6678.008468
EM: Round [241] log likelihood: -6678.007511
EM: Round [242] log likelihood: -6678.006558
EM: Round [243] log likelihood: -6678.005609
EM: Round [244] log likelihood: -6678.004664
EM: Round [245] log likelihood: -6678.003723
EM: Round [246] log likelihood: -6678.002786
EM: Round [247] log likelihood: -6678.001854
EM: Round [248] log likelihood: -6678.000926
EM: Round [249] log likelihood: -6678.000002
EM: Round [250] log likelihood: -6677.999081
EM: Round [251] log likelihood: -6677.998165
EM: Round [252] log likelihood: -6677.997253
EM: Round [253] log likelihood: -6677.996345
EM: Round [254] log likelihood: -6677.995441
EM: Round [255] log likelihood: -6677.994541
EM: Round [256] log likelihood: -6677.993644
EM: Round [257] log likelihood: -6677.992752
EM: Round [258] log likelihood: -6677.991864
EM: Round [259] log likelihood: -6677.990979
EM: Round [260] log likelihood: -6677.990098
EM: Round [261] log likelihood: -6677.989221
EM: Round [262] log likelihood: -6677.988348
EM: Round [263] log likelihood: -6677.987479
EM: Round [264] log likelihood: -6677.986613
EM: Round [265] log likelihood: -6677.985752
EM: Round [266] log likelihood: -6677.984894
EM: Round [267] log likelihood: -6677.984039
EM: Round [268] log likelihood: -6677.983189
EM: Round [269] log likelihood: -6677.982342
EM: Round [270] log likelihood: -6677.981498
EM: Round [271] log likelihood: -6677.980659
EM: Round [272] log likelihood: -6677.979822
EM: Round [273] log likelihood: -6677.978990
EM: Round [274] log likelihood: -6677.978161
EM: Round [275] log likelihood: -6677.977336
EM: Round [276] log likelihood: -6677.976514
EM: Round [277] log likelihood: -6677.975696
EM: Round [278] log likelihood: -6677.974881
EM: Round [279] log likelihood: -6677.974070
EM: Round [280] log likelihood: -6677.973262
EM: Round [281] log likelihood: -6677.972457
EM: Round [282] log likelihood: -6677.971656
EM: Round [283] log likelihood: -6677.970859
EM: Round [284] log likelihood: -6677.970065
EM: Round [285] log likelihood: -6677.969274
EM: Round [286] log likelihood: -6677.968487
EM: Round [287] log likelihood: -6677.967703
EM: Round [288] log likelihood: -6677.966922
EM: Round [289] log likelihood: -6677.966145
EM: Round [290] log likelihood: -6677.965371
EM: Round [291] log likelihood: -6677.964600
EM: Round [292] log likelihood: -6677.963832
EM: Round [293] log likelihood: -6677.963068
EM: Round [294] log likelihood: -6677.962307
EM: Round [295] log likelihood: -6677.961549
EM: Round [296] log likelihood: -6677.960795
EM: Round [297] log likelihood: -6677.960043
EM: Round [298] log likelihood: -6677.959295
EM: Round [299] log likelihood: -6677.958550
EM: Round [300] log likelihood: -6677.957808
EM: Round [301] log likelihood: -6677.957069
EM: Round [302] log likelihood: -6677.956334
EM: Round [303] log likelihood: -6677.955601
EM: Round [304] log likelihood: -6677.954871
EM: Round [305] log likelihood: -6677.954145
EM: Round [306] log likelihood: -6677.953422
EM: Round [307] log likelihood: -6677.952701
EM: Round [308] log likelihood: -6677.951984
EM: Round [309] log likelihood: -6677.951269
EM: Round [310] log likelihood: -6677.950558
EM: Round [311] log likelihood: -6677.949850
EM: Round [312] log likelihood: -6677.949144
EM: Round [313] log likelihood: -6677.948442
EM: Round [314] log likelihood: -6677.947742
EM: Round [315] log likelihood: -6677.947045
EM: Round [316] log likelihood: -6677.946352
EM: Round [317] log likelihood: -6677.945661
EM: Round [318] log likelihood: -6677.944973
EM: Round [319] log likelihood: -6677.944287
EM: Round [320] log likelihood: -6677.943605
EM: Round [321] log likelihood: -6677.942926
EM: Round [322] log likelihood: -6677.942249
EM: Round [323] log likelihood: -6677.941575
EM: Round [324] log likelihood: -6677.940904
EM: Round [325] log likelihood: -6677.940236
EM: Round [326] log likelihood: -6677.939570
EM: Round [327] log likelihood: -6677.938908
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EM: Round [783] log likelihood: -6677.798083
EM: Round [784] log likelihood: -6677.797966
EM: Round [785] log likelihood: -6677.797849
EM: Round [786] log likelihood: -6677.797732
EM: Round [787] log likelihood: -6677.797616
EM: Round [788] log likelihood: -6677.797501
EM: Round [789] log likelihood: -6677.797385
EM: Round [790] log likelihood: -6677.797270
EM: Round [791] log likelihood: -6677.797156
EM: Round [792] log likelihood: -6677.797042
EM: Round [793] log likelihood: -6677.796928
EM: Round [794] log likelihood: -6677.796815
EM: Round [795] log likelihood: -6677.796702
EM: Round [796] log likelihood: -6677.796590
EM: Round [797] log likelihood: -6677.796478
EM: Round [798] log likelihood: -6677.796366
EM: Round [799] log likelihood: -6677.796255
EM: Round [800] log likelihood: -6677.796144
EM: Round [801] log likelihood: -6677.796033
EM: Round [802] log likelihood: -6677.795923
EM: Round [803] log likelihood: -6677.795814
EM: Round [804] log likelihood: -6677.795704
EM: Round [805] log likelihood: -6677.795595
EM: Round [806] log likelihood: -6677.795487
EM: Round [807] log likelihood: -6677.795379
EM: Round [808] log likelihood: -6677.795271
EM: Round [809] log likelihood: -6677.795164
EM: Round [810] log likelihood: -6677.795057
EM: Round [811] log likelihood: -6677.794950
EM: Round [812] log likelihood: -6677.794844
EM: Round [813] log likelihood: -6677.794738
EM: Round [814] log likelihood: -6677.794633
EM: Round [815] log likelihood: -6677.794528
EM: Round [816] log likelihood: -6677.794423
EM: Round [817] log likelihood: -6677.794319
EM: Round [818] log likelihood: -6677.794215
EM: Round [819] log likelihood: -6677.794111
EM: Round [820] log likelihood: -6677.794008
EM: Round [821] log likelihood: -6677.793905
EM: Round [822] log likelihood: -6677.793803
EM: Round [823] log likelihood: -6677.793701
EM: Round [824] log likelihood: -6677.793599
EM: Round [825] log likelihood: -6677.793498
EM: Round [826] log likelihood: -6677.793397
EM: Round [827] log likelihood: -6677.793296
EM: Round [828] log likelihood: -6677.793196
EM: Round [829] log likelihood: -6677.793096
EM: Stopping iterations at round 829 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1_1.fastp.fastq.gz: 69211967
Warning - not locating file: /tmp/nxf.XJibhaNoI4/aih-tih-sc-284856-R1_A23WJ53LT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000242808.10]
WARNING, no entry stored in dbm for [ENSG00000242808.10]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286065.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000249375.8]
ls: cannot access 'IGV_inputs': No such file or directory