AIH curated blacklist: matched 7 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 161
Pass (FILTER=PASS): 20 (12.4%)
Fail (FILTER=FAIL): 141 (87.6%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 7
All 7 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 20
confidence_below_min(medium<high): 18
confidence_below_min(low<high): 17
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 16
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 13
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 11
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 9
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 9
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 6
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 4
confidence_below_min(medium<high);aih_curated_blacklist: 3
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 2
aih_curated_blacklist: 1
Breakdown by confidence:
high: 20 pass, 2 fail (total: 22)
low: 0 pass, 96 fail (total: 96)
medium: 0 pass, 43 fail (total: 43)
Arriba filter: 161 rows -> 20 PASS; wrote FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.arriba.fusions.filtered.tsv and FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.arriba.fusions.filter_summary.txt