Work Directory

Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR (aih-tih-sc-0992e4-R1_A23WJ53LT4_1)
Attempt
1
S3 Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/b68f7b4e9e7bff3d4e8c646aff2528

Files (108)

Name Size Modified
.command.begin 6 bytes Jun 08, 2026 3:09 AM
.command.err 16.5 KB Jun 08, 2026 4:38 AM
.command.log 51.4 KB Jun 08, 2026 4:38 AM
.command.out 34.0 KB Jun 08, 2026 4:38 AM
.command.run 14.4 KB Jun 08, 2026 3:08 AM
.command.sh 670 bytes Jun 08, 2026 3:08 AM
.command.trace 297 bytes Jun 08, 2026 4:38 AM
.command.yaml 3.8 KB Jun 08, 2026 3:08 AM
.exitcode 1 byte Jun 08, 2026 4:38 AM
FusionInspector.log 43.8 KB Jun 08, 2026 4:38 AM
aih-tih-sc-0992e4-R1_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv 7.6 KB Jun 08, 2026 4:38 AM
aih-tih-sc-0992e4-R1_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect 98.7 KB Jun 08, 2026 4:38 AM
aih-tih-sc-0992e4-R1_A23WJ53LT4_1.FusionInspector.fusions.tsv 682.6 KB Jun 08, 2026 4:38 AM
aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusion_inspector_web.html 627.7 KB Jun 08, 2026 4:38 AM
chckpts_dir/EM_adj_counts.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/add_FFPM.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/add_splice_info.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.bed.bedsort.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.bed.bgzip.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.bed.tabix.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.junction_reads.bam.bam_to_bed.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.junction_reads.bam.bedsort.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.junction_reads.bam.bgzip.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.junction_reads.bam.tabix.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.spanning_reads.bam.bam_to_bed.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.spanning_reads.bam.bedsort.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.spanning_reads.bam.bgzip.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.spanning_reads.bam.tabix.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/annot_filter.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/append_microH_info.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/blast_filter.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/coalesce_junc_n_span.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/cp_consol_bam.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/cp_contigs_file_workdir 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/cp_final.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/cp_gtf_file_workdir.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/create_fi_igvjs.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/cytoband.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/filter_by_frag_threshs.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/final.abridged.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/fusion_annotator.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/fusion_coding_region_effect.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/fusion_contigs.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/fusion_reports_html.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/index_consol_bam.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/init_EM_adj_counts.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/init_spanning_reads_bam.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/mark_dup_reads.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/mark_dups_reads.index.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/merged_contig_fai.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/merged_contig_gtf_to_bed.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/microH.dat.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/prep_igv_extract_junc_reads.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/prep_igv_junc_reads_bam.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/prep_igv_juncspan_fmt.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/prep_igv_pfam_bed.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/prep_igv_pfam_gff3.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/prep_igv_sam_frag_coordss.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/prep_igv_seqsim_bed.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/prep_igv_seqsim_gff3.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/prep_spanning_reads.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/run_STAR.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/samtools_idx_junc_reads_bam.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/samtools_index_span_reads_bam.ok 0 bytes Jun 08, 2026 4:38 AM
chckpts_dir/span_reads_acc.ok 0 bytes Jun 08, 2026 4:38 AM
fi_workdir/Log.final.out 2.0 KB Jun 08, 2026 4:38 AM
fi_workdir/Log.out 23.4 KB Jun 08, 2026 4:38 AM
fi_workdir/Log.progress.out 8.5 KB Jun 08, 2026 4:38 AM
fi_workdir/SJ.out.tab 19.8 MB Jun 08, 2026 4:38 AM
fi_workdir/_STARgenome/exonGeTrInfo.tab 48.5 KB Jun 08, 2026 4:38 AM
fi_workdir/_STARgenome/exonInfo.tab 22.0 KB Jun 08, 2026 4:38 AM
fi_workdir/_STARgenome/geneInfo.tab 3.2 KB Jun 08, 2026 4:38 AM
fi_workdir/_STARgenome/sjdbInfo.txt 10.8 MB Jun 08, 2026 4:38 AM
fi_workdir/_STARgenome/sjdbList.fromGTF.out.tab 13.8 KB Jun 08, 2026 4:38 AM
fi_workdir/_STARgenome/sjdbList.out.tab 9.5 MB Jun 08, 2026 4:38 AM
fi_workdir/_STARgenome/transcriptInfo.tab 19.3 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fa 646.3 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary 910.9 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj 911.7 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh 741.6 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo 742.4 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter 682.0 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.info 742.6 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter 682.0 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter.info 682.0 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs 216.3 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs 5.5 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.gtf 1.4 MB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam 25.9 MB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.bai 7.6 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.failed_reads_during_span_analysis 5.6 MB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam 2.3 MB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info 221.2 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam 22.5 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 695.7 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.read_align_counts.idx 49.2 MB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.read_align_counts.idx.ok 0 bytes Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.spanning_reads_want.idx 8.0 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.sortedByCoord.out.bam 42.9 MB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.sortedByCoord.out.bam.bai 8.4 KB Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.sortedByCoord.out.bam.bai.ok 0 bytes Jun 08, 2026 4:38 AM
fi_workdir/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.star.sortedByCoord.out.bam.ok 0 bytes Jun 08, 2026 4:38 AM
fi_workdir/microH.dat 115.0 KB Jun 08, 2026 4:38 AM
fi_workdir/pipeliner.1343.cmds 999 bytes Jun 08, 2026 4:38 AM
fi_workdir/star_align.ok 0 bytes Jun 08, 2026 4:38 AM
versions.yml 103 bytes Jun 08, 2026 4:38 AM