Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/28f052b6ba3c0fa03bd3ce0c1d0b7a/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/241f35a252434b9b5c8f5dfc32a2d6/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/28f052b6ba3c0fa03bd3ce0c1d0b7a/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/8f986c81d83ac2691bbb9117acfbf4/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
RIPK4--KCNJ6
starfusion
arriba
WASH3P--IQSEC3
starfusion
AGPAT3--GRM5
starfusion
arriba
AL669831.4--SEPTIN14
starfusion
TLK2P1--AC110079.1
starfusion
KCNN4--LYPD5
starfusion
TCF7L2--AL158212.1
starfusion
TLK2--AC240565.1
starfusion
ANKH--HNRNPKP5
starfusion
WASHC1--IQSEC3
arriba
TVP23C--CDRT4
arriba
0%| | 0/11 [00:00<?, ?it/s]
Processing RIPK4--KCNJ6: 0%| | 0/11 [00:00<?, ?it/s]
Processing RIPK4--KCNJ6: 9%|▉ | 1/11 [00:00<00:01, 9.21it/s]
Processing WASH3P--IQSEC3: 9%|▉ | 1/11 [00:00<00:01, 9.21it/s]
Processing WASH3P--IQSEC3: 18%|█▊ | 2/11 [00:00<00:00, 9.45it/s]
Processing AGPAT3--GRM5: 18%|█▊ | 2/11 [00:00<00:00, 9.45it/s]
Processing AGPAT3--GRM5: 27%|██▋ | 3/11 [00:00<00:00, 9.53it/s]
Processing AL669831.4--SEPTIN14: 27%|██▋ | 3/11 [00:00<00:00, 9.53it/s]
Processing AL669831.4--SEPTIN14: 36%|███▋ | 4/11 [00:00<00:00, 9.58it/s]
Processing TLK2P1--AC110079.1: 36%|███▋ | 4/11 [00:00<00:00, 9.58it/s]
Processing TLK2P1--AC110079.1: 45%|████▌ | 5/11 [00:00<00:00, 9.60it/s]
Processing KCNN4--LYPD5: 45%|████▌ | 5/11 [00:00<00:00, 9.60it/s]
Processing KCNN4--LYPD5: 55%|█████▍ | 6/11 [00:00<00:00, 9.60it/s]
Processing TCF7L2--AL158212.1: 55%|█████▍ | 6/11 [00:00<00:00, 9.60it/s]
Processing TCF7L2--AL158212.1: 64%|██████▎ | 7/11 [00:00<00:00, 9.61it/s]
Processing TLK2--AC240565.1: 64%|██████▎ | 7/11 [00:00<00:00, 9.61it/s]
Processing TLK2--AC240565.1: 73%|███████▎ | 8/11 [00:00<00:00, 9.62it/s]
Processing ANKH--HNRNPKP5: 73%|███████▎ | 8/11 [00:00<00:00, 9.62it/s]
Processing ANKH--HNRNPKP5: 82%|████████▏ | 9/11 [00:00<00:00, 9.62it/s]
Processing WASHC1--IQSEC3: 82%|████████▏ | 9/11 [00:00<00:00, 9.62it/s]
Processing WASHC1--IQSEC3: 91%|█████████ | 10/11 [00:01<00:00, 9.63it/s]
Processing TVP23C--CDRT4: 91%|█████████ | 10/11 [00:01<00:00, 9.63it/s]
Processing TVP23C--CDRT4: 100%|██████████| 11/11 [00:01<00:00, 9.63it/s]
Processing TVP23C--CDRT4: 100%|██████████| 11/11 [00:01<00:00, 9.59it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory