Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/28f052b6ba3c0fa03bd3ce0c1d0b7a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/241f35a252434b9b5c8f5dfc32a2d6/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/28f052b6ba3c0fa03bd3ce0c1d0b7a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/8f986c81d83ac2691bbb9117acfbf4/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
RIPK4--KCNJ6
starfusion
arriba
WASH3P--IQSEC3
starfusion
AGPAT3--GRM5
starfusion
arriba
AL669831.4--SEPTIN14
starfusion
TLK2P1--AC110079.1
starfusion
KCNN4--LYPD5
starfusion
TCF7L2--AL158212.1
starfusion
TLK2--AC240565.1
starfusion
ANKH--HNRNPKP5
starfusion
WASHC1--IQSEC3
arriba
TVP23C--CDRT4
arriba

  0%|          | 0/11 [00:00<?, ?it/s]
Processing RIPK4--KCNJ6:   0%|          | 0/11 [00:00<?, ?it/s]
Processing RIPK4--KCNJ6:   9%|▉         | 1/11 [00:00<00:01,  9.21it/s]
Processing WASH3P--IQSEC3:   9%|▉         | 1/11 [00:00<00:01,  9.21it/s]
Processing WASH3P--IQSEC3:  18%|█▊        | 2/11 [00:00<00:00,  9.45it/s]
Processing AGPAT3--GRM5:  18%|█▊        | 2/11 [00:00<00:00,  9.45it/s]  
Processing AGPAT3--GRM5:  27%|██▋       | 3/11 [00:00<00:00,  9.53it/s]
Processing AL669831.4--SEPTIN14:  27%|██▋       | 3/11 [00:00<00:00,  9.53it/s]
Processing AL669831.4--SEPTIN14:  36%|███▋      | 4/11 [00:00<00:00,  9.58it/s]
Processing TLK2P1--AC110079.1:  36%|███▋      | 4/11 [00:00<00:00,  9.58it/s]  
Processing TLK2P1--AC110079.1:  45%|████▌     | 5/11 [00:00<00:00,  9.60it/s]
Processing KCNN4--LYPD5:  45%|████▌     | 5/11 [00:00<00:00,  9.60it/s]      
Processing KCNN4--LYPD5:  55%|█████▍    | 6/11 [00:00<00:00,  9.60it/s]
Processing TCF7L2--AL158212.1:  55%|█████▍    | 6/11 [00:00<00:00,  9.60it/s]
Processing TCF7L2--AL158212.1:  64%|██████▎   | 7/11 [00:00<00:00,  9.61it/s]
Processing TLK2--AC240565.1:  64%|██████▎   | 7/11 [00:00<00:00,  9.61it/s]  
Processing TLK2--AC240565.1:  73%|███████▎  | 8/11 [00:00<00:00,  9.62it/s]
Processing ANKH--HNRNPKP5:  73%|███████▎  | 8/11 [00:00<00:00,  9.62it/s]  
Processing ANKH--HNRNPKP5:  82%|████████▏ | 9/11 [00:00<00:00,  9.62it/s]
Processing WASHC1--IQSEC3:  82%|████████▏ | 9/11 [00:00<00:00,  9.62it/s]
Processing WASHC1--IQSEC3:  91%|█████████ | 10/11 [00:01<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  91%|█████████ | 10/11 [00:01<00:00,  9.63it/s] 
Processing TVP23C--CDRT4: 100%|██████████| 11/11 [00:01<00:00,  9.63it/s]
Processing TVP23C--CDRT4: 100%|██████████| 11/11 [00:01<00:00,  9.59it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory