Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 08:51:27.375 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 08:51:27 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 08:51:27 GMT 2026] Executing as ?@nf-d22497075a8f752b7036c4ca8d8de4cb-1a7f4-hrb2v on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 08:51:27 MarkDuplicates Start of doWork freeMemory: 105828728; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 08:51:27 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 08:51:27 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 08:51:31 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,318,861 INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 2343 as yet unmatched pairs. 279 records in RAM. INFO 2026-06-08 08:51:34 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:6,233,564 INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 4541 as yet unmatched pairs. 255 records in RAM. INFO 2026-06-08 08:51:36 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:11,069,592 INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 6576 as yet unmatched pairs. 260 records in RAM. INFO 2026-06-08 08:51:37 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:16,367,246 INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 8366 as yet unmatched pairs. 168 records in RAM. INFO 2026-06-08 08:51:40 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:20,757,201 INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 10195 as yet unmatched pairs. 302 records in RAM. INFO 2026-06-08 08:51:42 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:23,193,531 INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 11910 as yet unmatched pairs. 176 records in RAM. INFO 2026-06-08 08:51:44 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:26,697,222 INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 13593 as yet unmatched pairs. 274 records in RAM. INFO 2026-06-08 08:51:45 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:29,069,156 INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 15477 as yet unmatched pairs. 192 records in RAM. INFO 2026-06-08 08:51:47 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:32,894,838 INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 17584 as yet unmatched pairs. 363 records in RAM. INFO 2026-06-08 08:51:48 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:37,592,713 INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 19210 as yet unmatched pairs. 179 records in RAM. INFO 2026-06-08 08:51:50 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:42,278,561 INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 21179 as yet unmatched pairs. 504 records in RAM. INFO 2026-06-08 08:51:53 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:45,347,608 INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 22836 as yet unmatched pairs. 270 records in RAM. INFO 2026-06-08 08:51:55 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:53,210,864 INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 24719 as yet unmatched pairs. 333 records in RAM. INFO 2026-06-08 08:51:57 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:70,234,718 INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 27208 as yet unmatched pairs. 1077 records in RAM. INFO 2026-06-08 08:51:58 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:93,256,245 INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 27950 as yet unmatched pairs. 142 records in RAM. INFO 2026-06-08 08:52:00 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:108,924,175 INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 29545 as yet unmatched pairs. 274 records in RAM. INFO 2026-06-08 08:52:01 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:112,698,292 INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 31308 as yet unmatched pairs. 250 records in RAM. INFO 2026-06-08 08:52:03 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:117,115,604 INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 33198 as yet unmatched pairs. 464 records in RAM. INFO 2026-06-08 08:52:05 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:119,937,384 INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 37949 as yet unmatched pairs. 3598 records in RAM. INFO 2026-06-08 08:52:06 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:120,520,593 INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 36165 as yet unmatched pairs. 421 records in RAM. INFO 2026-06-08 08:52:08 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:145,098,992 INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 37039 as yet unmatched pairs. 327 records in RAM. INFO 2026-06-08 08:52:10 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:146,133,530 INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 38464 as yet unmatched pairs. 952 records in RAM. INFO 2026-06-08 08:52:12 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:147,620,947 INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 39221 as yet unmatched pairs. 861 records in RAM. INFO 2026-06-08 08:52:14 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:148,584,586 INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 41883 as yet unmatched pairs. 2932 records in RAM. INFO 2026-06-08 08:52:15 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:149,455,467 INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 41962 as yet unmatched pairs. 2115 records in RAM. INFO 2026-06-08 08:52:17 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,839 INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 41128 as yet unmatched pairs. 475 records in RAM. INFO 2026-06-08 08:52:18 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:150,472,099 INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 42856 as yet unmatched pairs. 693 records in RAM. INFO 2026-06-08 08:52:20 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:150,967,700 INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 46601 as yet unmatched pairs. 2703 records in RAM. INFO 2026-06-08 08:52:22 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:151,342,910 INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 46389 as yet unmatched pairs. 742 records in RAM. INFO 2026-06-08 08:52:24 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:151,760,028 INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 48127 as yet unmatched pairs. 582 records in RAM. INFO 2026-06-08 08:52:26 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:153,828,175 INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 50309 as yet unmatched pairs. 972 records in RAM. INFO 2026-06-08 08:52:27 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:154,172,029 INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 62013 as yet unmatched pairs. 11024 records in RAM. INFO 2026-06-08 08:52:29 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:154,589,761 INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 55027 as yet unmatched pairs. 2616 records in RAM. INFO 2026-06-08 08:52:30 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:155,015,590 INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 56207 as yet unmatched pairs. 1963 records in RAM. INFO 2026-06-08 08:52:33 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:155,188,205 INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 59844 as yet unmatched pairs. 3668 records in RAM. INFO 2026-06-08 08:52:34 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:155,238,169 INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 58102 as yet unmatched pairs. 696 records in RAM. INFO 2026-06-08 08:52:36 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:155,659,999 INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 60342 as yet unmatched pairs. 1246 records in RAM. INFO 2026-06-08 08:52:38 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:156,051,306 INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 61479 as yet unmatched pairs. 748 records in RAM. INFO 2026-06-08 08:52:40 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:156,278,970 INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 64462 as yet unmatched pairs. 1562 records in RAM. INFO 2026-06-08 08:52:41 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:156,767,749 INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 65874 as yet unmatched pairs. 1193 records in RAM. INFO 2026-06-08 08:52:43 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:160,290,038 INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 67256 as yet unmatched pairs. 659 records in RAM. INFO 2026-06-08 08:52:44 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:161,168,456 INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 68800 as yet unmatched pairs. 471 records in RAM. INFO 2026-06-08 08:52:46 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:164,799,782 INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 72414 as yet unmatched pairs. 2329 records in RAM. INFO 2026-06-08 08:52:48 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:169,127,333 INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 74218 as yet unmatched pairs. 2364 records in RAM. INFO 2026-06-08 08:52:49 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:171,575,031 INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 74446 as yet unmatched pairs. 1105 records in RAM. INFO 2026-06-08 08:52:51 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:176,710,039 INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 75012 as yet unmatched pairs. 68 records in RAM. INFO 2026-06-08 08:52:53 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:180,288,435 INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 77332 as yet unmatched pairs. 669 records in RAM. INFO 2026-06-08 08:52:55 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:184,795,685 INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 78948 as yet unmatched pairs. 656 records in RAM. INFO 2026-06-08 08:52:56 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:186,353,686 INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 83154 as yet unmatched pairs. 3291 records in RAM. INFO 2026-06-08 08:52:58 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:200,739,946 INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 81881 as yet unmatched pairs. 464 records in RAM. INFO 2026-06-08 08:53:00 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:202,755,435 INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 84161 as yet unmatched pairs. 867 records in RAM. INFO 2026-06-08 08:53:01 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:203,847,434 INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 85986 as yet unmatched pairs. 1117 records in RAM. INFO 2026-06-08 08:53:03 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:205,147,628 INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 86909 as yet unmatched pairs. 372 records in RAM. INFO 2026-06-08 08:53:05 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:207,783,290 INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 94199 as yet unmatched pairs. 5983 records in RAM. INFO 2026-06-08 08:53:06 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:212,972,849 INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 90209 as yet unmatched pairs. 278 records in RAM. INFO 2026-06-08 08:53:08 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:220,190,108 INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 92631 as yet unmatched pairs. 1101 records in RAM. INFO 2026-06-08 08:53:09 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:224,954,957 INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 93877 as yet unmatched pairs. 661 records in RAM. INFO 2026-06-08 08:53:11 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:226,388,662 INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 95407 as yet unmatched pairs. 607 records in RAM. INFO 2026-06-08 08:53:12 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:228,293,489 INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 97023 as yet unmatched pairs. 194 records in RAM. INFO 2026-06-08 08:53:15 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:231,275,456 INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 99541 as yet unmatched pairs. 572 records in RAM. INFO 2026-06-08 08:53:17 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:234,608,916 INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 104052 as yet unmatched pairs. 2981 records in RAM. INFO 2026-06-08 08:53:19 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:243,211,919 INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 103087 as yet unmatched pairs. 211 records in RAM. INFO 2026-06-08 08:53:20 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:246,842,706 INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 105108 as yet unmatched pairs. 585 records in RAM. INFO 2026-06-08 08:53:23 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:9,423,678 INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 106560 as yet unmatched pairs. 104360 records in RAM. INFO 2026-06-08 08:53:25 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:20,255,080 INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 109473 as yet unmatched pairs. 107242 records in RAM. INFO 2026-06-08 08:53:27 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr2:26,034,616 INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 110467 as yet unmatched pairs. 108192 records in RAM. INFO 2026-06-08 08:53:29 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:27,657,611 INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 112084 as yet unmatched pairs. 109791 records in RAM. INFO 2026-06-08 08:53:31 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,254 INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 147293 as yet unmatched pairs. 109061 records in RAM. INFO 2026-06-08 08:53:33 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 552839 as yet unmatched pairs. 85233 records in RAM. INFO 2026-06-08 08:53:34 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 929108 as yet unmatched pairs. 63381 records in RAM. INFO 2026-06-08 08:53:36 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:33,347,366 INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 990679 as yet unmatched pairs. 59755 records in RAM. INFO 2026-06-08 08:53:38 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr2:42,579,172 INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 990331 as yet unmatched pairs. 59385 records in RAM. INFO 2026-06-08 08:53:40 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:47,386,693 INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 987478 as yet unmatched pairs. 56488 records in RAM. INFO 2026-06-08 08:53:42 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:55,579,757 INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 986384 as yet unmatched pairs. 55354 records in RAM. INFO 2026-06-08 08:53:43 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:64,552,967 INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 984451 as yet unmatched pairs. 53339 records in RAM. INFO 2026-06-08 08:53:45 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:71,396,141 INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 983341 as yet unmatched pairs. 52192 records in RAM. INFO 2026-06-08 08:53:47 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:74,426,499 INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 980982 as yet unmatched pairs. 49803 records in RAM. INFO 2026-06-08 08:53:48 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:85,541,648 INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 980310 as yet unmatched pairs. 49094 records in RAM. INFO 2026-06-08 08:53:50 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:95,281,939 INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 978998 as yet unmatched pairs. 47762 records in RAM. INFO 2026-06-08 08:53:52 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:96,762,173 INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 976968 as yet unmatched pairs. 45701 records in RAM. INFO 2026-06-08 08:53:53 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:98,656,458 INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 975270 as yet unmatched pairs. 43968 records in RAM. INFO 2026-06-08 08:53:56 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:101,253,098 INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 973466 as yet unmatched pairs. 42079 records in RAM. INFO 2026-06-08 08:53:57 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:108,771,774 INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 973332 as yet unmatched pairs. 41917 records in RAM. INFO 2026-06-08 08:53:59 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:112,482,410 INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 970916 as yet unmatched pairs. 39479 records in RAM. INFO 2026-06-08 08:54:00 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:126,557,391 INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 969504 as yet unmatched pairs. 38031 records in RAM. INFO 2026-06-08 08:54:02 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:130,174,976 INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 968400 as yet unmatched pairs. 36887 records in RAM. INFO 2026-06-08 08:54:03 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:130,638,667 INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 967416 as yet unmatched pairs. 35860 records in RAM. INFO 2026-06-08 08:54:05 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:131,482,770 INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 966106 as yet unmatched pairs. 34530 records in RAM. INFO 2026-06-08 08:54:06 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:131,601,426 INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 970903 as yet unmatched pairs. 39260 records in RAM. INFO 2026-06-08 08:54:09 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:132,878,845 INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 963073 as yet unmatched pairs. 31316 records in RAM. INFO 2026-06-08 08:54:10 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:152,664,140 INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 961942 as yet unmatched pairs. 30067 records in RAM. INFO 2026-06-08 08:54:12 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:168,247,127 INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 960056 as yet unmatched pairs. 28118 records in RAM. INFO 2026-06-08 08:54:14 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:174,720,033 INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 959147 as yet unmatched pairs. 27172 records in RAM. INFO 2026-06-08 08:54:16 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:181,482,599 INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 956866 as yet unmatched pairs. 24842 records in RAM. INFO 2026-06-08 08:54:18 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:190,976,967 INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 957218 as yet unmatched pairs. 25143 records in RAM. INFO 2026-06-08 08:54:20 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:201,704,567 INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 953772 as yet unmatched pairs. 21665 records in RAM. INFO 2026-06-08 08:54:22 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:208,304,186 INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 952380 as yet unmatched pairs. 20236 records in RAM. INFO 2026-06-08 08:54:24 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:211,725,092 INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 958428 as yet unmatched pairs. 26264 records in RAM. INFO 2026-06-08 08:54:25 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,325 INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 953232 as yet unmatched pairs. 20978 records in RAM. INFO 2026-06-08 08:54:27 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,410,064 INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 951277 as yet unmatched pairs. 19006 records in RAM. INFO 2026-06-08 08:54:29 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:216,679,076 INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 951520 as yet unmatched pairs. 19213 records in RAM. INFO 2026-06-08 08:54:31 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:219,178,877 INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 944569 as yet unmatched pairs. 12213 records in RAM. INFO 2026-06-08 08:54:32 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:222,922,629 INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 942964 as yet unmatched pairs. 10586 records in RAM. INFO 2026-06-08 08:54:35 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:231,165,896 INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 940446 as yet unmatched pairs. 8030 records in RAM. INFO 2026-06-08 08:54:37 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 2s. Last read position: chr2:235,040,907 INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 938702 as yet unmatched pairs. 6238 records in RAM. INFO 2026-06-08 08:54:39 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 2s. Last read position: chr2:237,542,576 INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 946849 as yet unmatched pairs. 14335 records in RAM. INFO 2026-06-08 08:54:41 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:241,051,682 INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 934390 as yet unmatched pairs. 1821 records in RAM. INFO 2026-06-08 08:54:43 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr3:4,733,087 INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 932408 as yet unmatched pairs. 46673 records in RAM. INFO 2026-06-08 08:54:45 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:9,923,994 INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 931307 as yet unmatched pairs. 45523 records in RAM. INFO 2026-06-08 08:54:46 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:13,342,043 INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 928958 as yet unmatched pairs. 43145 records in RAM. INFO 2026-06-08 08:54:48 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:31,533,132 INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 927721 as yet unmatched pairs. 41850 records in RAM. INFO 2026-06-08 08:54:50 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:38,125,852 INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 925873 as yet unmatched pairs. 39972 records in RAM. INFO 2026-06-08 08:54:51 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:42,639,158 INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 924443 as yet unmatched pairs. 38509 records in RAM. INFO 2026-06-08 08:54:53 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr3:47,005,949 INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 922523 as yet unmatched pairs. 36523 records in RAM. INFO 2026-06-08 08:54:55 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:48,405,738 INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 922034 as yet unmatched pairs. 36004 records in RAM. INFO 2026-06-08 08:54:58 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr3:49,012,289 INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 919153 as yet unmatched pairs. 33097 records in RAM. INFO 2026-06-08 08:54:59 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:49,357,404 INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 918225 as yet unmatched pairs. 32160 records in RAM. INFO 2026-06-08 08:55:01 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:50,175,075 INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 915424 as yet unmatched pairs. 29346 records in RAM. INFO 2026-06-08 08:55:03 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:52,228,977 INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 912827 as yet unmatched pairs. 26694 records in RAM. INFO 2026-06-08 08:55:05 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:53,497,128 INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 911686 as yet unmatched pairs. 25531 records in RAM. INFO 2026-06-08 08:55:06 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:58,123,117 INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 912831 as yet unmatched pairs. 26644 records in RAM. INFO 2026-06-08 08:55:08 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr3:67,520,556 INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 907586 as yet unmatched pairs. 21348 records in RAM. INFO 2026-06-08 08:55:10 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:101,579,849 INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 906473 as yet unmatched pairs. 20203 records in RAM. INFO 2026-06-08 08:55:12 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:113,661,119 INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 904611 as yet unmatched pairs. 18296 records in RAM. INFO 2026-06-08 08:55:13 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:122,569,298 INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 903251 as yet unmatched pairs. 16908 records in RAM. INFO 2026-06-08 08:55:15 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:127,022,797 INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 901569 as yet unmatched pairs. 15187 records in RAM. INFO 2026-06-08 08:55:17 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:129,606,473 INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 899232 as yet unmatched pairs. 12814 records in RAM. INFO 2026-06-08 08:55:19 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:138,571,048 INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 898003 as yet unmatched pairs. 11556 records in RAM. INFO 2026-06-08 08:55:21 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr3:149,542,379 INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 896215 as yet unmatched pairs. 9743 records in RAM. INFO 2026-06-08 08:55:23 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:160,531,494 INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 894488 as yet unmatched pairs. 7975 records in RAM. INFO 2026-06-08 08:55:25 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:179,378,619 INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 892884 as yet unmatched pairs. 6334 records in RAM. INFO 2026-06-08 08:55:27 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:184,317,336 INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 893063 as yet unmatched pairs. 6492 records in RAM. INFO 2026-06-08 08:55:29 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,288 INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 891755 as yet unmatched pairs. 5165 records in RAM. INFO 2026-06-08 08:55:30 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:195,965,500 INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 887795 as yet unmatched pairs. 1160 records in RAM. INFO 2026-06-08 08:55:32 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr4:888,881 INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 886769 as yet unmatched pairs. 28380 records in RAM. INFO 2026-06-08 08:55:34 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:1,793,914 INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 884471 as yet unmatched pairs. 26050 records in RAM. INFO 2026-06-08 08:55:36 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:2,928,363 INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 882563 as yet unmatched pairs. 24106 records in RAM. INFO 2026-06-08 08:55:37 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:7,010,655 INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 880058 as yet unmatched pairs. 21557 records in RAM. INFO 2026-06-08 08:55:39 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:17,842,361 INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 878126 as yet unmatched pairs. 19578 records in RAM. INFO 2026-06-08 08:55:41 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:40,798,813 INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 876533 as yet unmatched pairs. 17932 records in RAM. INFO 2026-06-08 08:55:43 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr4:56,371,523 INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 875216 as yet unmatched pairs. 16592 records in RAM. INFO 2026-06-08 08:55:44 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:75,793,744 INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 874052 as yet unmatched pairs. 15383 records in RAM. INFO 2026-06-08 08:55:46 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:82,842,389 INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 872221 as yet unmatched pairs. 13514 records in RAM. INFO 2026-06-08 08:55:49 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 2s. Last read position: chr4:89,247,778 INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 870872 as yet unmatched pairs. 12127 records in RAM. INFO 2026-06-08 08:55:51 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:97,981,300 INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 868853 as yet unmatched pairs. 10093 records in RAM. INFO 2026-06-08 08:55:53 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:106,262,124 INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 867771 as yet unmatched pairs. 8947 records in RAM. INFO 2026-06-08 08:55:54 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:122,309,410 INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 866127 as yet unmatched pairs. 7250 records in RAM. INFO 2026-06-08 08:55:56 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:140,639,420 INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 867657 as yet unmatched pairs. 8726 records in RAM. INFO 2026-06-08 08:55:57 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:150,808,333 INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 864179 as yet unmatched pairs. 5201 records in RAM. INFO 2026-06-08 08:55:59 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:165,079,627 INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 861314 as yet unmatched pairs. 2274 records in RAM. INFO 2026-06-08 08:56:01 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:185,342,011 INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 860045 as yet unmatched pairs. 972 records in RAM. INFO 2026-06-08 08:56:03 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:6,625,610 INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 858091 as yet unmatched pairs. 41478 records in RAM. INFO 2026-06-08 08:56:04 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:14,419,789 INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 857797 as yet unmatched pairs. 41173 records in RAM. INFO 2026-06-08 08:56:07 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr5:35,065,605 INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 855127 as yet unmatched pairs. 38458 records in RAM. INFO 2026-06-08 08:56:10 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 3s. Last read position: chr5:42,801,108 INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 857510 as yet unmatched pairs. 40788 records in RAM. INFO 2026-06-08 08:56:11 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:56,881,957 INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 851488 as yet unmatched pairs. 34742 records in RAM. INFO 2026-06-08 08:56:13 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr5:69,285,385 INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 850180 as yet unmatched pairs. 33391 records in RAM. INFO 2026-06-08 08:56:14 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:70,942,856 INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 849633 as yet unmatched pairs. 32766 records in RAM. INFO 2026-06-08 08:56:16 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:73,074,742 INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 848209 as yet unmatched pairs. 31305 records in RAM. INFO 2026-06-08 08:56:18 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:81,513,628 INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 847471 as yet unmatched pairs. 30523 records in RAM. INFO 2026-06-08 08:56:19 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:96,803,585 INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 845829 as yet unmatched pairs. 28862 records in RAM. INFO 2026-06-08 08:56:21 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:116,134,084 INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 843864 as yet unmatched pairs. 26852 records in RAM. INFO 2026-06-08 08:56:23 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:132,369,735 INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 841786 as yet unmatched pairs. 24749 records in RAM. INFO 2026-06-08 08:56:25 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:134,560,725 INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 839953 as yet unmatched pairs. 22881 records in RAM. INFO 2026-06-08 08:56:26 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:135,571,423 INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 843971 as yet unmatched pairs. 26889 records in RAM. INFO 2026-06-08 08:56:29 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr5:138,467,181 INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 836421 as yet unmatched pairs. 19297 records in RAM. INFO 2026-06-08 08:56:31 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:139,681,140 INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 834805 as yet unmatched pairs. 17622 records in RAM. INFO 2026-06-08 08:56:32 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:141,854,091 INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 833575 as yet unmatched pairs. 16344 records in RAM. INFO 2026-06-08 08:56:34 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:149,525,155 INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 832003 as yet unmatched pairs. 14751 records in RAM. INFO 2026-06-08 08:56:36 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,595 INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 852163 as yet unmatched pairs. 34883 records in RAM. INFO 2026-06-08 08:56:37 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:150,521,491 INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 828153 as yet unmatched pairs. 10858 records in RAM. INFO 2026-06-08 08:56:39 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:157,287,054 INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 826694 as yet unmatched pairs. 9351 records in RAM. INFO 2026-06-08 08:56:41 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:171,407,755 INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 832500 as yet unmatched pairs. 15141 records in RAM. INFO 2026-06-08 08:56:43 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:177,294,643 INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 822817 as yet unmatched pairs. 5434 records in RAM. INFO 2026-06-08 08:56:44 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:179,707,160 INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 821388 as yet unmatched pairs. 3984 records in RAM. INFO 2026-06-08 08:56:46 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:179,837,564 INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 819308 as yet unmatched pairs. 1865 records in RAM. INFO 2026-06-08 08:56:49 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr6:3,263,588 INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 816992 as yet unmatched pairs. 51249 records in RAM. INFO 2026-06-08 08:56:51 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:7,581,002 INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 816306 as yet unmatched pairs. 50516 records in RAM. INFO 2026-06-08 08:56:53 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 2s. Last read position: chr6:16,306,725 INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 814154 as yet unmatched pairs. 48333 records in RAM. INFO 2026-06-08 08:56:54 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:26,123,542 INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 814288 as yet unmatched pairs. 48437 records in RAM. INFO 2026-06-08 08:56:56 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:28,904,056 INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 810691 as yet unmatched pairs. 44835 records in RAM. INFO 2026-06-08 08:56:58 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:30,705,128 INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 808767 as yet unmatched pairs. 42890 records in RAM. INFO 2026-06-08 08:56:59 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,246 INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 809969 as yet unmatched pairs. 44065 records in RAM. INFO 2026-06-08 08:57:01 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:31,644,972 INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 805676 as yet unmatched pairs. 39758 records in RAM. INFO 2026-06-08 08:57:02 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,035 INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 807297 as yet unmatched pairs. 41374 records in RAM. INFO 2026-06-08 08:57:04 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:31,947,464 INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 805528 as yet unmatched pairs. 39591 records in RAM. INFO 2026-06-08 08:57:05 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:31,997,281 INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 806531 as yet unmatched pairs. 40577 records in RAM. INFO 2026-06-08 08:57:07 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:32,035,198 INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 803443 as yet unmatched pairs. 37483 records in RAM. INFO 2026-06-08 08:57:09 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:32,971,760 INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 798895 as yet unmatched pairs. 32909 records in RAM. INFO 2026-06-08 08:57:11 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:33,304,278 INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 797792 as yet unmatched pairs. 31798 records in RAM. INFO 2026-06-08 08:57:13 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr6:34,538,216 INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 795354 as yet unmatched pairs. 29341 records in RAM. INFO 2026-06-08 08:57:15 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:37,477,597 INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 792789 as yet unmatched pairs. 26743 records in RAM. INFO 2026-06-08 08:57:17 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:42,966,228 INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 790887 as yet unmatched pairs. 24795 records in RAM. INFO 2026-06-08 08:57:18 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:44,135,057 INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 789107 as yet unmatched pairs. 22997 records in RAM. INFO 2026-06-08 08:57:20 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:53,005,183 INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 787383 as yet unmatched pairs. 21159 records in RAM. INFO 2026-06-08 08:57:22 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:72,290,744 INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 785781 as yet unmatched pairs. 19535 records in RAM. INFO 2026-06-08 08:57:24 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr6:82,365,665 INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 784463 as yet unmatched pairs. 18188 records in RAM. INFO 2026-06-08 08:57:25 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:97,149,852 INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 782439 as yet unmatched pairs. 16110 records in RAM. INFO 2026-06-08 08:57:27 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:109,786,372 INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 780919 as yet unmatched pairs. 14554 records in RAM. INFO 2026-06-08 08:57:28 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:125,922,819 INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 779088 as yet unmatched pairs. 12687 records in RAM. INFO 2026-06-08 08:57:30 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr6:138,255,649 INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 777779 as yet unmatched pairs. 11359 records in RAM. INFO 2026-06-08 08:57:32 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:149,676,274 INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 776209 as yet unmatched pairs. 9757 records in RAM. INFO 2026-06-08 08:57:34 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:151,808,259 INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 783017 as yet unmatched pairs. 16537 records in RAM. INFO 2026-06-08 08:57:36 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr6:152,094,485 INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 776774 as yet unmatched pairs. 10252 records in RAM. INFO 2026-06-08 08:57:38 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:158,608,419 INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 770798 as yet unmatched pairs. 4228 records in RAM. INFO 2026-06-08 08:57:40 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:161,109,733 INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 768570 as yet unmatched pairs. 1968 records in RAM. INFO 2026-06-08 08:57:42 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr7:510,826 INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 766728 as yet unmatched pairs. 50985 records in RAM. INFO 2026-06-08 08:57:43 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:4,789,910 INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 764452 as yet unmatched pairs. 48665 records in RAM. INFO 2026-06-08 08:57:45 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:5,376,981 INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 765131 as yet unmatched pairs. 49319 records in RAM. INFO 2026-06-08 08:57:47 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:5,729,480 INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 760299 as yet unmatched pairs. 44455 records in RAM. INFO 2026-06-08 08:57:48 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:17,299,217 INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 758854 as yet unmatched pairs. 42976 records in RAM. INFO 2026-06-08 08:57:50 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:32,559,204 INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 757222 as yet unmatched pairs. 41309 records in RAM. INFO 2026-06-08 08:57:52 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:44,040,315 INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 755407 as yet unmatched pairs. 39443 records in RAM. INFO 2026-06-08 08:57:53 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:50,595,475 INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 753530 as yet unmatched pairs. 37516 records in RAM. INFO 2026-06-08 08:57:55 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:71,677,267 INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 751877 as yet unmatched pairs. 35814 records in RAM. INFO 2026-06-08 08:57:56 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:73,736,538 INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 751552 as yet unmatched pairs. 35473 records in RAM. INFO 2026-06-08 08:57:58 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:75,287,031 INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 749848 as yet unmatched pairs. 33756 records in RAM. INFO 2026-06-08 08:58:00 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:76,304,030 INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 754343 as yet unmatched pairs. 38221 records in RAM. INFO 2026-06-08 08:58:02 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr7:87,179,630 INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 747158 as yet unmatched pairs. 30979 records in RAM. INFO 2026-06-08 08:58:04 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:92,093,188 INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 746529 as yet unmatched pairs. 30344 records in RAM. INFO 2026-06-08 08:58:06 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:94,656,430 INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 771318 as yet unmatched pairs. 55111 records in RAM. INFO 2026-06-08 08:58:07 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:94,663,677 INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 780888 as yet unmatched pairs. 64670 records in RAM. INFO 2026-06-08 08:58:09 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:94,664,026 INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 781291 as yet unmatched pairs. 65050 records in RAM. INFO 2026-06-08 08:58:11 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:94,664,382 INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 762035 as yet unmatched pairs. 45778 records in RAM. INFO 2026-06-08 08:58:13 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:94,665,430 INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 746542 as yet unmatched pairs. 30276 records in RAM. INFO 2026-06-08 08:58:14 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:99,547,115 INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 735482 as yet unmatched pairs. 19177 records in RAM. INFO 2026-06-08 08:58:16 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:100,358,344 INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 735593 as yet unmatched pairs. 19257 records in RAM. INFO 2026-06-08 08:58:18 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:101,132,052 INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 731687 as yet unmatched pairs. 15321 records in RAM. INFO 2026-06-08 08:58:19 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:102,558,433 INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 732034 as yet unmatched pairs. 15663 records in RAM. INFO 2026-06-08 08:58:20 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:104,168,492 INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 730115 as yet unmatched pairs. 13728 records in RAM. INFO 2026-06-08 08:58:23 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr7:120,970,857 INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 728447 as yet unmatched pairs. 12005 records in RAM. INFO 2026-06-08 08:58:25 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr7:128,754,710 INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 726936 as yet unmatched pairs. 10473 records in RAM. INFO 2026-06-08 08:58:27 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:138,525,239 INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 725694 as yet unmatched pairs. 9163 records in RAM. INFO 2026-06-08 08:58:29 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:140,834,663 INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 725058 as yet unmatched pairs. 8493 records in RAM. INFO 2026-06-08 08:58:30 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:144,285,957 INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 722165 as yet unmatched pairs. 5586 records in RAM. INFO 2026-06-08 08:58:32 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:150,371,934 INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 721652 as yet unmatched pairs. 5049 records in RAM. INFO 2026-06-08 08:58:33 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:152,154,059 INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 718850 as yet unmatched pairs. 2217 records in RAM. INFO 2026-06-08 08:58:35 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:158,930,448 INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 716901 as yet unmatched pairs. 244 records in RAM. INFO 2026-06-08 08:58:37 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr8:18,222,646 INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 715511 as yet unmatched pairs. 43397 records in RAM. INFO 2026-06-08 08:58:39 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr8:27,605,002 INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 714551 as yet unmatched pairs. 42396 records in RAM. INFO 2026-06-08 08:58:40 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr8:38,210,412 INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 711362 as yet unmatched pairs. 39199 records in RAM. INFO 2026-06-08 08:58:42 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr8:47,291,070 INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 710191 as yet unmatched pairs. 38007 records in RAM. INFO 2026-06-08 08:58:44 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr8:54,656,203 INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 707833 as yet unmatched pairs. 35605 records in RAM. INFO 2026-06-08 08:58:45 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr8:67,061,893 INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 706523 as yet unmatched pairs. 34271 records in RAM. INFO 2026-06-08 08:58:47 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr8:73,039,170 INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 704917 as yet unmatched pairs. 32640 records in RAM. INFO 2026-06-08 08:58:49 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr8:90,645,590 INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 703322 as yet unmatched pairs. 31007 records in RAM. INFO 2026-06-08 08:58:51 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr8:97,691,077 INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 702737 as yet unmatched pairs. 30393 records in RAM. INFO 2026-06-08 08:58:54 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr8:100,709,643 INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 701651 as yet unmatched pairs. 29296 records in RAM. INFO 2026-06-08 08:58:56 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr8:103,415,246 INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 698521 as yet unmatched pairs. 26145 records in RAM. INFO 2026-06-08 08:59:59 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 63s. Last read position: chr8:115,604,746 INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 701706 as yet unmatched pairs. 29286 records in RAM. INFO 2026-06-08 09:00:01 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 2s. Last read position: chr8:122,951,757 INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 695958 as yet unmatched pairs. 23499 records in RAM. INFO 2026-06-08 09:00:03 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:130,152,752 INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 694203 as yet unmatched pairs. 21728 records in RAM. INFO 2026-06-08 09:00:04 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,326,289 INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 692049 as yet unmatched pairs. 19524 records in RAM. INFO 2026-06-08 09:00:07 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 2s. Last read position: chr8:143,726,387 INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 691554 as yet unmatched pairs. 19003 records in RAM. INFO 2026-06-08 09:00:08 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,299 INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 687823 as yet unmatched pairs. 15259 records in RAM. INFO 2026-06-08 09:00:10 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,886 INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 689645 as yet unmatched pairs. 17068 records in RAM. INFO 2026-06-08 09:00:11 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,389 INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 687266 as yet unmatched pairs. 14689 records in RAM. INFO 2026-06-08 09:00:12 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,690 INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 695268 as yet unmatched pairs. 22682 records in RAM. INFO 2026-06-08 09:00:14 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,241 INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 685976 as yet unmatched pairs. 13385 records in RAM. INFO 2026-06-08 09:00:15 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,836 INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 683900 as yet unmatched pairs. 11309 records in RAM. INFO 2026-06-08 09:00:16 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,870,667 INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 684549 as yet unmatched pairs. 11956 records in RAM. INFO 2026-06-08 09:00:17 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,719 INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 681378 as yet unmatched pairs. 8755 records in RAM. INFO 2026-06-08 09:00:20 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr8:144,051,317 INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 678766 as yet unmatched pairs. 6096 records in RAM. INFO 2026-06-08 09:00:21 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:144,395,305 INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 676481 as yet unmatched pairs. 3798 records in RAM. INFO 2026-06-08 09:00:23 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:144,581,103 INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 674197 as yet unmatched pairs. 1487 records in RAM. INFO 2026-06-08 09:00:25 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 2s. Last read position: chr9:5,753,219 INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 672016 as yet unmatched pairs. 37546 records in RAM. INFO 2026-06-08 09:00:27 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr9:15,527,625 INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 670133 as yet unmatched pairs. 35598 records in RAM. INFO 2026-06-08 09:00:29 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr9:33,469,090 INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 668779 as yet unmatched pairs. 34218 records in RAM. INFO 2026-06-08 09:00:31 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:35,698,422 INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 667406 as yet unmatched pairs. 32825 records in RAM. INFO 2026-06-08 09:00:32 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:41,128,156 INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 664843 as yet unmatched pairs. 30237 records in RAM. INFO 2026-06-08 09:00:34 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:68,780,551 INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 664464 as yet unmatched pairs. 29818 records in RAM. INFO 2026-06-08 09:00:35 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:86,016,586 INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 662559 as yet unmatched pairs. 27886 records in RAM. INFO 2026-06-08 09:00:37 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:93,107,755 INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 661211 as yet unmatched pairs. 26496 records in RAM. INFO 2026-06-08 09:00:39 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:98,133,203 INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 659322 as yet unmatched pairs. 24593 records in RAM. INFO 2026-06-08 09:00:40 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:111,394,179 INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 657871 as yet unmatched pairs. 23118 records in RAM. INFO 2026-06-08 09:00:42 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:114,368,503 INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 655387 as yet unmatched pairs. 20598 records in RAM. INFO 2026-06-08 09:00:44 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:122,092,770 INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 653860 as yet unmatched pairs. 19047 records in RAM. INFO 2026-06-08 09:00:45 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:127,399,969 INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 652150 as yet unmatched pairs. 17279 records in RAM. INFO 2026-06-08 09:00:47 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:128,500,199 INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 650098 as yet unmatched pairs. 15214 records in RAM. INFO 2026-06-08 09:00:49 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:129,111,489 INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 648816 as yet unmatched pairs. 13910 records in RAM. INFO 2026-06-08 09:00:50 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:131,459,180 INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 647215 as yet unmatched pairs. 12295 records in RAM. INFO 2026-06-08 09:00:52 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:133,365,990 INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 645130 as yet unmatched pairs. 10166 records in RAM. INFO 2026-06-08 09:00:54 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 2s. Last read position: chr9:136,407,531 INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 642646 as yet unmatched pairs. 7644 records in RAM. INFO 2026-06-08 09:00:56 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr9:136,825,805 INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 641126 as yet unmatched pairs. 6113 records in RAM. INFO 2026-06-08 09:00:58 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:137,112,992 INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 638949 as yet unmatched pairs. 3910 records in RAM. INFO 2026-06-08 09:01:00 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:137,613,651 INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 636914 as yet unmatched pairs. 1839 records in RAM. INFO 2026-06-08 09:01:03 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 3s. Last read position: chr10:5,747,062 INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 634397 as yet unmatched pairs. 32943 records in RAM. INFO 2026-06-08 09:01:05 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:8,058,829 INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 637562 as yet unmatched pairs. 36089 records in RAM. INFO 2026-06-08 09:01:06 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:18,540,077 INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 630782 as yet unmatched pairs. 29261 records in RAM. INFO 2026-06-08 09:01:08 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:27,504,421 INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 629869 as yet unmatched pairs. 28302 records in RAM. INFO 2026-06-08 09:01:10 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:32,035,912 INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 632401 as yet unmatched pairs. 30822 records in RAM. INFO 2026-06-08 09:01:11 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:37,181,475 INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 630162 as yet unmatched pairs. 28566 records in RAM. INFO 2026-06-08 09:01:13 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:43,112,907 INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 629157 as yet unmatched pairs. 27478 records in RAM. INFO 2026-06-08 09:01:15 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:46,109,292 INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 623360 as yet unmatched pairs. 21662 records in RAM. INFO 2026-06-08 09:01:17 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 2s. Last read position: chr10:60,075,283 INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 622374 as yet unmatched pairs. 20661 records in RAM. INFO 2026-06-08 09:01:19 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:70,146,247 INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 620966 as yet unmatched pairs. 19245 records in RAM. INFO 2026-06-08 09:01:20 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:73,770,279 INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 619201 as yet unmatched pairs. 17458 records in RAM. INFO 2026-06-08 09:01:22 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:78,037,220 INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 619423 as yet unmatched pairs. 17661 records in RAM. INFO 2026-06-08 09:01:24 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:87,234,668 INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 615771 as yet unmatched pairs. 13977 records in RAM. INFO 2026-06-08 09:01:25 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:92,573,895 INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 614052 as yet unmatched pairs. 12239 records in RAM. INFO 2026-06-08 09:01:27 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:97,453,809 INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 612430 as yet unmatched pairs. 10594 records in RAM. INFO 2026-06-08 09:01:29 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr10:101,579,513 INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 611340 as yet unmatched pairs. 9470 records in RAM. INFO 2026-06-08 09:01:31 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:103,385,325 INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 608505 as yet unmatched pairs. 6610 records in RAM. INFO 2026-06-08 09:01:33 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:116,096,698 INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 607291 as yet unmatched pairs. 5379 records in RAM. INFO 2026-06-08 09:01:35 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:119,726,336 INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 605462 as yet unmatched pairs. 3537 records in RAM. INFO 2026-06-08 09:01:37 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:127,023,247 INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 604129 as yet unmatched pairs. 2181 records in RAM. INFO 2026-06-08 09:01:39 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr11:239,064 INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 602406 as yet unmatched pairs. 70936 records in RAM. INFO 2026-06-08 09:01:40 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:320,617 INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 612609 as yet unmatched pairs. 81135 records in RAM. INFO 2026-06-08 09:01:42 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:581,527 INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 598031 as yet unmatched pairs. 66545 records in RAM. INFO 2026-06-08 09:01:44 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:837,967 INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 597433 as yet unmatched pairs. 65925 records in RAM. INFO 2026-06-08 09:01:46 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr11:3,768,732 INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 593622 as yet unmatched pairs. 62078 records in RAM. INFO 2026-06-08 09:01:48 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr11:6,682,269 INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 591815 as yet unmatched pairs. 60263 records in RAM. INFO 2026-06-08 09:01:50 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:11,880,205 INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 590267 as yet unmatched pairs. 58703 records in RAM. INFO 2026-06-08 09:01:52 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:18,483,938 INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 589288 as yet unmatched pairs. 57717 records in RAM. INFO 2026-06-08 09:01:53 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:34,096,668 INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 588005 as yet unmatched pairs. 56407 records in RAM. INFO 2026-06-08 09:01:55 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:45,806,017 INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 585078 as yet unmatched pairs. 53467 records in RAM. INFO 2026-06-08 09:01:57 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:57,308,592 INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 583175 as yet unmatched pairs. 51547 records in RAM. INFO 2026-06-08 09:01:58 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:59,152,403 INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 582094 as yet unmatched pairs. 50445 records in RAM. INFO 2026-06-08 09:02:00 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:61,416,189 INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 579593 as yet unmatched pairs. 47918 records in RAM. INFO 2026-06-08 09:02:02 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:62,517,466 INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 579676 as yet unmatched pairs. 47973 records in RAM. INFO 2026-06-08 09:02:05 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr11:62,526,023 INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 578499 as yet unmatched pairs. 46786 records in RAM. INFO 2026-06-08 09:02:06 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:62,534,010 INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 576877 as yet unmatched pairs. 45151 records in RAM. INFO 2026-06-08 09:02:08 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:63,143,474 INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 573125 as yet unmatched pairs. 41377 records in RAM. INFO 2026-06-08 09:02:10 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:64,369,416 INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 571073 as yet unmatched pairs. 39315 records in RAM. INFO 2026-06-08 09:02:11 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:65,348,883 INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 569402 as yet unmatched pairs. 37637 records in RAM. INFO 2026-06-08 09:02:13 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:65,659,663 INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 569220 as yet unmatched pairs. 37328 records in RAM. INFO 2026-06-08 09:02:15 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:66,521,268 INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 565026 as yet unmatched pairs. 33129 records in RAM. INFO 2026-06-08 09:02:16 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:68,036,528 INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 562685 as yet unmatched pairs. 30768 records in RAM. INFO 2026-06-08 09:02:18 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:68,780,709 INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 562970 as yet unmatched pairs. 31025 records in RAM. INFO 2026-06-08 09:02:20 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:68,892,355 INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 563121 as yet unmatched pairs. 31151 records in RAM. INFO 2026-06-08 09:02:22 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:69,071,359 INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 559781 as yet unmatched pairs. 27803 records in RAM. INFO 2026-06-08 09:02:24 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr11:69,648,007 INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 576417 as yet unmatched pairs. 44427 records in RAM. INFO 2026-06-08 09:02:25 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:70,161,255 INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 557569 as yet unmatched pairs. 25570 records in RAM. INFO 2026-06-08 09:02:27 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:70,407,325 INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 556533 as yet unmatched pairs. 24502 records in RAM. INFO 2026-06-08 09:02:29 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:70,486,687 INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 553888 as yet unmatched pairs. 21841 records in RAM. INFO 2026-06-08 09:02:31 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr11:72,013,188 INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 550267 as yet unmatched pairs. 18171 records in RAM. INFO 2026-06-08 09:02:33 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:73,677,922 INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 559717 as yet unmatched pairs. 27601 records in RAM. INFO 2026-06-08 09:02:35 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:74,092,446 INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 545617 as yet unmatched pairs. 13480 records in RAM. INFO 2026-06-08 09:02:37 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:77,619,540 INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 546748 as yet unmatched pairs. 14567 records in RAM. INFO 2026-06-08 09:02:38 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:77,928,504 INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 542639 as yet unmatched pairs. 10449 records in RAM. INFO 2026-06-08 09:02:40 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:78,124,005 INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 546418 as yet unmatched pairs. 14195 records in RAM. INFO 2026-06-08 09:02:42 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:85,725,910 INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 539253 as yet unmatched pairs. 7003 records in RAM. INFO 2026-06-08 09:02:43 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:108,514,089 INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 537495 as yet unmatched pairs. 5228 records in RAM. INFO 2026-06-08 09:02:45 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:118,898,773 INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 535970 as yet unmatched pairs. 3695 records in RAM. INFO 2026-06-08 09:02:47 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:124,887,382 INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 534137 as yet unmatched pairs. 1845 records in RAM. INFO 2026-06-08 09:02:49 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr12:18,382 INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 532442 as yet unmatched pairs. 45922 records in RAM. INFO 2026-06-08 09:02:51 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:6,462,879 INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 530725 as yet unmatched pairs. 44191 records in RAM. INFO 2026-06-08 09:02:53 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:7,488,003 INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 528962 as yet unmatched pairs. 42416 records in RAM. INFO 2026-06-08 09:02:54 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:14,423,948 INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 527669 as yet unmatched pairs. 41095 records in RAM. INFO 2026-06-08 09:02:56 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:31,087,941 INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 525823 as yet unmatched pairs. 39227 records in RAM. INFO 2026-06-08 09:02:58 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:47,747,757 INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 524247 as yet unmatched pairs. 37633 records in RAM. INFO 2026-06-08 09:02:59 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:49,032,410 INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 522581 as yet unmatched pairs. 35957 records in RAM. INFO 2026-06-08 09:03:01 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:49,514,574 INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 520775 as yet unmatched pairs. 34134 records in RAM. INFO 2026-06-08 09:03:03 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:51,379,586 INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 521574 as yet unmatched pairs. 34924 records in RAM. INFO 2026-06-08 09:03:05 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr12:53,053,773 INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 517521 as yet unmatched pairs. 30855 records in RAM. INFO 2026-06-08 09:03:07 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:53,504,394 INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 515489 as yet unmatched pairs. 28812 records in RAM. INFO 2026-06-08 09:03:09 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:55,967,856 INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 513901 as yet unmatched pairs. 27213 records in RAM. INFO 2026-06-08 09:03:10 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:56,178,024 INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 513021 as yet unmatched pairs. 26320 records in RAM. INFO 2026-06-08 09:03:12 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:56,716,078 INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 510869 as yet unmatched pairs. 24159 records in RAM. INFO 2026-06-08 09:03:14 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:57,254,922 INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 509232 as yet unmatched pairs. 22497 records in RAM. INFO 2026-06-08 09:03:16 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:62,571,352 INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 507362 as yet unmatched pairs. 20608 records in RAM. INFO 2026-06-08 09:03:17 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:71,620,011 INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 505779 as yet unmatched pairs. 18998 records in RAM. INFO 2026-06-08 09:03:20 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr12:93,641,205 INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 504220 as yet unmatched pairs. 17413 records in RAM. INFO 2026-06-08 09:03:22 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:101,726,327 INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 503908 as yet unmatched pairs. 17082 records in RAM. INFO 2026-06-08 09:03:23 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:109,097,634 INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 500539 as yet unmatched pairs. 13692 records in RAM. INFO 2026-06-08 09:03:25 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:112,048,401 INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 498808 as yet unmatched pairs. 11945 records in RAM. INFO 2026-06-08 09:03:27 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:113,186,751 INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 497760 as yet unmatched pairs. 10877 records in RAM. INFO 2026-06-08 09:03:28 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:118,020,929 INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 495200 as yet unmatched pairs. 8297 records in RAM. INFO 2026-06-08 09:03:31 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 2s. Last read position: chr12:121,253,368 INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 493504 as yet unmatched pairs. 6580 records in RAM. INFO 2026-06-08 09:03:32 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:122,978,464 INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 491591 as yet unmatched pairs. 4657 records in RAM. INFO 2026-06-08 09:03:34 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:124,971,343 INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 489748 as yet unmatched pairs. 2784 records in RAM. INFO 2026-06-08 09:03:36 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:132,730,087 INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 488198 as yet unmatched pairs. 1212 records in RAM. INFO 2026-06-08 09:03:37 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr13:20,987,955 INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 486120 as yet unmatched pairs. 11539 records in RAM. INFO 2026-06-08 09:03:39 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr13:32,208,983 INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 484836 as yet unmatched pairs. 10249 records in RAM. INFO 2026-06-08 09:03:41 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr13:41,721,505 INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 483200 as yet unmatched pairs. 8602 records in RAM. INFO 2026-06-08 09:03:42 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr13:49,540,889 INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 481697 as yet unmatched pairs. 7077 records in RAM. INFO 2026-06-08 09:03:44 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr13:76,885,521 INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 480056 as yet unmatched pairs. 5391 records in RAM. INFO 2026-06-08 09:03:46 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr13:99,540,767 INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 479130 as yet unmatched pairs. 4452 records in RAM. INFO 2026-06-08 09:03:48 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr13:112,856,049 INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 476136 as yet unmatched pairs. 1450 records in RAM. INFO 2026-06-08 09:03:50 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr14:21,017,567 INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 474246 as yet unmatched pairs. 31863 records in RAM. INFO 2026-06-08 09:03:52 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr14:22,902,263 INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 472509 as yet unmatched pairs. 30112 records in RAM. INFO 2026-06-08 09:03:53 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr14:23,566,131 INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 471133 as yet unmatched pairs. 28713 records in RAM. INFO 2026-06-08 09:03:55 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr14:24,241,033 INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 469234 as yet unmatched pairs. 26812 records in RAM. INFO 2026-06-08 09:03:57 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr14:31,302,201 INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 466703 as yet unmatched pairs. 24268 records in RAM. INFO 2026-06-08 09:03:58 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:37,680,252 INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 465558 as yet unmatched pairs. 23110 records in RAM. INFO 2026-06-08 09:04:00 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr14:50,200,975 INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 463466 as yet unmatched pairs. 20890 records in RAM. INFO 2026-06-08 09:04:02 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr14:58,364,433 INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 461770 as yet unmatched pairs. 19163 records in RAM. INFO 2026-06-08 09:04:03 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr14:64,211,968 INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 460363 as yet unmatched pairs. 17725 records in RAM. INFO 2026-06-08 09:04:05 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:68,912,129 INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 459413 as yet unmatched pairs. 16745 records in RAM. INFO 2026-06-08 09:04:07 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr14:73,492,088 INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 456894 as yet unmatched pairs. 14206 records in RAM. INFO 2026-06-08 09:04:09 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr14:75,707,023 INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 455088 as yet unmatched pairs. 12394 records in RAM. INFO 2026-06-08 09:04:10 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr14:89,412,203 INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 453373 as yet unmatched pairs. 10669 records in RAM. INFO 2026-06-08 09:04:12 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr14:94,114,860 INFO 2026-06-08 09:04:12 MarkDuplicates Tracking 458104 as yet unmatched pairs. 15389 records in RAM. INFO 2026-06-08 09:04:15 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr14:100,097,546 INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 453761 as yet unmatched pairs. 11026 records in RAM. INFO 2026-06-08 09:04:17 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:102,002,790 INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 448202 as yet unmatched pairs. 5455 records in RAM. INFO 2026-06-08 09:04:18 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:103,468,086 INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 446500 as yet unmatched pairs. 3738 records in RAM. INFO 2026-06-08 09:04:20 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:105,211,204 INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 444131 as yet unmatched pairs. 1360 records in RAM. INFO 2026-06-08 09:04:22 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr15:25,354,528 INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 442481 as yet unmatched pairs. 25810 records in RAM. INFO 2026-06-08 09:04:23 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr15:34,382,026 INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 441395 as yet unmatched pairs. 24722 records in RAM. INFO 2026-06-08 09:04:25 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr15:40,844,620 INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 442006 as yet unmatched pairs. 25307 records in RAM. INFO 2026-06-08 09:04:26 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr15:42,472,296 INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 437324 as yet unmatched pairs. 20610 records in RAM. INFO 2026-06-08 09:04:28 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr15:43,792,371 INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 440770 as yet unmatched pairs. 24050 records in RAM. INFO 2026-06-08 09:04:30 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr15:48,496,110 INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 434025 as yet unmatched pairs. 17286 records in RAM. INFO 2026-06-08 09:04:31 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr15:55,340,627 INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 432566 as yet unmatched pairs. 15803 records in RAM. INFO 2026-06-08 09:04:33 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr15:61,911,939 INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 431069 as yet unmatched pairs. 14298 records in RAM. INFO 2026-06-08 09:04:35 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 2s. Last read position: chr15:64,675,564 INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 429713 as yet unmatched pairs. 12915 records in RAM. INFO 2026-06-08 09:04:38 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr15:69,261,184 INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 427733 as yet unmatched pairs. 10911 records in RAM. INFO 2026-06-08 09:04:40 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr15:72,555,890 INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 426326 as yet unmatched pairs. 9474 records in RAM. INFO 2026-06-08 09:04:41 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr15:75,358,255 INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 424181 as yet unmatched pairs. 7310 records in RAM. INFO 2026-06-08 09:04:43 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:79,311,310 INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 422644 as yet unmatched pairs. 5760 records in RAM. INFO 2026-06-08 09:04:44 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:85,693,351 INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 420597 as yet unmatched pairs. 3699 records in RAM. INFO 2026-06-08 09:04:46 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr15:90,913,744 INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 418728 as yet unmatched pairs. 1816 records in RAM. INFO 2026-06-08 09:04:48 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr16:16,915 INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 417390 as yet unmatched pairs. 64261 records in RAM. INFO 2026-06-08 09:04:50 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:549,342 INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 415518 as yet unmatched pairs. 62371 records in RAM. INFO 2026-06-08 09:04:52 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr16:686,048 INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 413155 as yet unmatched pairs. 59996 records in RAM. INFO 2026-06-08 09:04:53 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:1,445,483 INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 411155 as yet unmatched pairs. 57994 records in RAM. INFO 2026-06-08 09:04:55 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:1,773,829 INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 409128 as yet unmatched pairs. 55958 records in RAM. INFO 2026-06-08 09:04:57 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:2,089,924 INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 405780 as yet unmatched pairs. 52605 records in RAM. INFO 2026-06-08 09:04:58 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:2,284,299 INFO 2026-06-08 09:04:58 MarkDuplicates Tracking 403406 as yet unmatched pairs. 50214 records in RAM. INFO 2026-06-08 09:05:00 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,659 INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 403569 as yet unmatched pairs. 50373 records in RAM. INFO 2026-06-08 09:05:03 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr16:2,767,958 INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 402183 as yet unmatched pairs. 48981 records in RAM. INFO 2026-06-08 09:05:05 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:3,476,259 INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 399526 as yet unmatched pairs. 46316 records in RAM. INFO 2026-06-08 09:05:06 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:4,513,713 INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 395780 as yet unmatched pairs. 42559 records in RAM. INFO 2026-06-08 09:05:08 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:9,070,765 INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 393644 as yet unmatched pairs. 40418 records in RAM. INFO 2026-06-08 09:05:10 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:14,240,362 INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 395449 as yet unmatched pairs. 42215 records in RAM. INFO 2026-06-08 09:05:11 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:14,919,125 INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 391124 as yet unmatched pairs. 37878 records in RAM. INFO 2026-06-08 09:05:12 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:15,036,202 INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 390740 as yet unmatched pairs. 37488 records in RAM. INFO 2026-06-08 09:05:14 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:16,316,764 INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 389158 as yet unmatched pairs. 35905 records in RAM. INFO 2026-06-08 09:05:15 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:16,350,397 INFO 2026-06-08 09:05:15 MarkDuplicates Tracking 390297 as yet unmatched pairs. 37037 records in RAM. INFO 2026-06-08 09:05:16 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:18,339,478 INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 388619 as yet unmatched pairs. 35354 records in RAM. INFO 2026-06-08 09:05:18 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:18,377,577 INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 388736 as yet unmatched pairs. 35465 records in RAM. INFO 2026-06-08 09:05:19 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:18,793,303 INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 387376 as yet unmatched pairs. 34097 records in RAM. INFO 2026-06-08 09:05:21 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:20,736,980 INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 383953 as yet unmatched pairs. 30664 records in RAM. INFO 2026-06-08 09:05:22 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:21,419,514 INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 385176 as yet unmatched pairs. 31887 records in RAM. INFO 2026-06-08 09:05:24 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,655 INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 384134 as yet unmatched pairs. 30832 records in RAM. INFO 2026-06-08 09:05:26 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:22,513,867 INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 383227 as yet unmatched pairs. 29906 records in RAM. INFO 2026-06-08 09:05:27 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,091 INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 381881 as yet unmatched pairs. 28559 records in RAM. INFO 2026-06-08 09:05:29 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:27,537,908 INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 380612 as yet unmatched pairs. 27277 records in RAM. INFO 2026-06-08 09:05:31 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr16:28,830,975 INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 381071 as yet unmatched pairs. 27725 records in RAM. INFO 2026-06-08 09:05:32 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:29,435,920 INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 378887 as yet unmatched pairs. 25533 records in RAM. INFO 2026-06-08 09:05:34 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:29,799,327 INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 377042 as yet unmatched pairs. 23687 records in RAM. INFO 2026-06-08 09:05:35 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:29,861,221 INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 375520 as yet unmatched pairs. 22160 records in RAM. INFO 2026-06-08 09:05:37 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:30,195,026 INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 372773 as yet unmatched pairs. 19394 records in RAM. INFO 2026-06-08 09:05:38 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:30,444,499 INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 372575 as yet unmatched pairs. 19182 records in RAM. INFO 2026-06-08 09:05:40 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:30,737,082 INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 370393 as yet unmatched pairs. 16984 records in RAM. INFO 2026-06-08 09:05:42 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:31,132,120 INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 370375 as yet unmatched pairs. 16960 records in RAM. INFO 2026-06-08 09:05:43 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:31,191,026 INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 369898 as yet unmatched pairs. 16476 records in RAM. INFO 2026-06-08 09:05:45 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:53,156,410 INFO 2026-06-08 09:05:45 MarkDuplicates Tracking 365080 as yet unmatched pairs. 11647 records in RAM. INFO 2026-06-08 09:05:47 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:58,538,192 INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 362889 as yet unmatched pairs. 9439 records in RAM. INFO 2026-06-08 09:05:49 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:68,231,194 INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 361089 as yet unmatched pairs. 7629 records in RAM. INFO 2026-06-08 09:05:51 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 2s. Last read position: chr16:71,284,144 INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 358919 as yet unmatched pairs. 5444 records in RAM. INFO 2026-06-08 09:05:53 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:83,756,558 INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 356976 as yet unmatched pairs. 3456 records in RAM. INFO 2026-06-08 09:05:55 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:88,736,273 INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 355523 as yet unmatched pairs. 1974 records in RAM. INFO 2026-06-08 09:05:57 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr17:1,361,996 INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 354872 as yet unmatched pairs. 144556 records in RAM. INFO 2026-06-08 09:05:59 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:3,591,187 INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 351184 as yet unmatched pairs. 140866 records in RAM. INFO 2026-06-08 09:06:01 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:5,020,595 INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 349278 as yet unmatched pairs. 138951 records in RAM. INFO 2026-06-08 09:06:02 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:7,500,642 INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 347766 as yet unmatched pairs. 137434 records in RAM. INFO 2026-06-08 09:06:04 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:8,160,796 INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 346067 as yet unmatched pairs. 135735 records in RAM. INFO 2026-06-08 09:06:06 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:17,221,533 INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 344166 as yet unmatched pairs. 133830 records in RAM. INFO 2026-06-08 09:06:08 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:18,663,010 INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 341740 as yet unmatched pairs. 131399 records in RAM. INFO 2026-06-08 09:06:09 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:28,342,355 INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 340277 as yet unmatched pairs. 129928 records in RAM. INFO 2026-06-08 09:06:11 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:28,642,308 INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 341373 as yet unmatched pairs. 131022 records in RAM. INFO 2026-06-08 09:06:13 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 2s. Last read position: chr17:29,096,767 INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 336845 as yet unmatched pairs. 126490 records in RAM. INFO 2026-06-08 09:06:15 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr17:30,427,499 INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 335243 as yet unmatched pairs. 124867 records in RAM. INFO 2026-06-08 09:06:17 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:31,988,406 INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 336337 as yet unmatched pairs. 125955 records in RAM. INFO 2026-06-08 09:06:19 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:35,844,089 INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 331582 as yet unmatched pairs. 121197 records in RAM. INFO 2026-06-08 09:06:20 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:36,510,879 INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 330980 as yet unmatched pairs. 120591 records in RAM. INFO 2026-06-08 09:06:22 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:37,978,853 INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 330856 as yet unmatched pairs. 120455 records in RAM. INFO 2026-06-08 09:06:23 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:38,182,213 INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 329412 as yet unmatched pairs. 119011 records in RAM. INFO 2026-06-08 09:06:25 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:38,561,684 INFO 2026-06-08 09:06:25 MarkDuplicates Tracking 328529 as yet unmatched pairs. 118111 records in RAM. INFO 2026-06-08 09:06:26 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:38,716,750 INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 333950 as yet unmatched pairs. 123527 records in RAM. INFO 2026-06-08 09:06:28 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:38,735,455 INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 329762 as yet unmatched pairs. 119327 records in RAM. INFO 2026-06-08 09:06:30 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:38,870,181 INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 325946 as yet unmatched pairs. 115506 records in RAM. INFO 2026-06-08 09:06:32 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 2s. Last read position: chr17:39,408,602 INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 320290 as yet unmatched pairs. 109849 records in RAM. INFO 2026-06-08 09:06:34 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr17:39,635,615 INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 318511 as yet unmatched pairs. 108070 records in RAM. INFO 2026-06-08 09:06:36 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:39,700,181 INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 361844 as yet unmatched pairs. 151387 records in RAM. INFO 2026-06-08 09:06:38 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 2s. Last read position: chr17:39,706,144 INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 385551 as yet unmatched pairs. 175094 records in RAM. INFO 2026-06-08 09:06:40 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:39,707,124 INFO 2026-06-08 09:06:40 MarkDuplicates Tracking 433109 as yet unmatched pairs. 222649 records in RAM. INFO 2026-06-08 09:06:42 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:39,708,471 INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 422903 as yet unmatched pairs. 212433 records in RAM. INFO 2026-06-08 09:06:44 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,409 INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 415928 as yet unmatched pairs. 205453 records in RAM. INFO 2026-06-08 09:06:46 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,004 INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 481791 as yet unmatched pairs. 271315 records in RAM. INFO 2026-06-08 09:06:47 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,176 INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 408330 as yet unmatched pairs. 197854 records in RAM. INFO 2026-06-08 09:06:49 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,435 INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 360941 as yet unmatched pairs. 150465 records in RAM. INFO 2026-06-08 09:06:51 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:39,712,036 INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 380614 as yet unmatched pairs. 170138 records in RAM. INFO 2026-06-08 09:06:53 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,264 INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 407071 as yet unmatched pairs. 196594 records in RAM. INFO 2026-06-08 09:06:54 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,490 INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 366024 as yet unmatched pairs. 155547 records in RAM. INFO 2026-06-08 09:06:56 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,868 INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 396309 as yet unmatched pairs. 185832 records in RAM. INFO 2026-06-08 09:06:59 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 2s. Last read position: chr17:39,716,347 INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 435531 as yet unmatched pairs. 225054 records in RAM. INFO 2026-06-08 09:07:01 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 2s. Last read position: chr17:39,716,537 INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 475258 as yet unmatched pairs. 264765 records in RAM. INFO 2026-06-08 09:07:03 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr17:39,717,328 INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 403240 as yet unmatched pairs. 192747 records in RAM. INFO 2026-06-08 09:07:05 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr17:39,719,724 INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 390867 as yet unmatched pairs. 180374 records in RAM. INFO 2026-06-08 09:07:06 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,386 INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 422516 as yet unmatched pairs. 212007 records in RAM. INFO 2026-06-08 09:07:08 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,593 INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 415298 as yet unmatched pairs. 204785 records in RAM. INFO 2026-06-08 09:07:10 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,964 INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 349626 as yet unmatched pairs. 139111 records in RAM. INFO 2026-06-08 09:07:11 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr17:39,724,850 INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 362711 as yet unmatched pairs. 152196 records in RAM. INFO 2026-06-08 09:07:13 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,177 INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 351704 as yet unmatched pairs. 141175 records in RAM. INFO 2026-06-08 09:07:15 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,774 INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 383186 as yet unmatched pairs. 172651 records in RAM. INFO 2026-06-08 09:07:17 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 2s. Last read position: chr17:39,726,626 INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 390919 as yet unmatched pairs. 180371 records in RAM. INFO 2026-06-08 09:07:19 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,953 INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 364954 as yet unmatched pairs. 154406 records in RAM. INFO 2026-06-08 09:07:20 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,455 INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 343427 as yet unmatched pairs. 132879 records in RAM. INFO 2026-06-08 09:07:23 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 2s. Last read position: chr17:39,727,802 INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 295623 as yet unmatched pairs. 85075 records in RAM. INFO 2026-06-08 09:07:25 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 2s. Last read position: chr17:39,745,484 INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 268686 as yet unmatched pairs. 58129 records in RAM. INFO 2026-06-08 09:07:27 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr17:40,019,594 INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 273298 as yet unmatched pairs. 62732 records in RAM. INFO 2026-06-08 09:07:28 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:40,122,442 INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 262060 as yet unmatched pairs. 51494 records in RAM. INFO 2026-06-08 09:09:50 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 141s. Last read position: chr17:40,133,834 INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 265423 as yet unmatched pairs. 54851 records in RAM. INFO 2026-06-08 09:09:51 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:40,331,172 INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 273998 as yet unmatched pairs. 63416 records in RAM. INFO 2026-06-08 09:09:53 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr17:40,352,440 INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 273078 as yet unmatched pairs. 62496 records in RAM. INFO 2026-06-08 09:09:55 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr17:40,628,845 INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 254675 as yet unmatched pairs. 44092 records in RAM. INFO 2026-06-08 09:09:56 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:41,901,695 INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 251957 as yet unmatched pairs. 41366 records in RAM. INFO 2026-06-08 09:09:58 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:42,698,953 INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 249535 as yet unmatched pairs. 38943 records in RAM. INFO 2026-06-08 09:10:00 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:43,882,416 INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 248327 as yet unmatched pairs. 37735 records in RAM. INFO 2026-06-08 09:10:02 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr17:45,096,193 INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 246414 as yet unmatched pairs. 35810 records in RAM. INFO 2026-06-08 09:10:03 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:47,652,854 INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 245489 as yet unmatched pairs. 34878 records in RAM. INFO 2026-06-08 09:10:05 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,141,243 INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 242809 as yet unmatched pairs. 32179 records in RAM. INFO 2026-06-08 09:10:07 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,893 INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 249639 as yet unmatched pairs. 39006 records in RAM. INFO 2026-06-08 09:10:09 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,019 INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 252254 as yet unmatched pairs. 41617 records in RAM. INFO 2026-06-08 09:10:11 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr17:56,891,621 INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 236852 as yet unmatched pairs. 26212 records in RAM. INFO 2026-06-08 09:10:12 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr17:59,660,338 INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 237430 as yet unmatched pairs. 26789 records in RAM. INFO 2026-06-08 09:10:14 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:60,226,090 INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 233426 as yet unmatched pairs. 22778 records in RAM. INFO 2026-06-08 09:10:16 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 2s. Last read position: chr17:64,148,939 INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 231320 as yet unmatched pairs. 20669 records in RAM. INFO 2026-06-08 09:10:18 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr17:68,037,137 INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 229811 as yet unmatched pairs. 19158 records in RAM. INFO 2026-06-08 09:10:19 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr17:74,440,321 INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 228407 as yet unmatched pairs. 17754 records in RAM. INFO 2026-06-08 09:10:22 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr17:75,568,984 INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 226237 as yet unmatched pairs. 15577 records in RAM. INFO 2026-06-08 09:10:24 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr17:76,067,224 INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 223706 as yet unmatched pairs. 13038 records in RAM. INFO 2026-06-08 09:10:25 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr17:78,205,963 INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 221861 as yet unmatched pairs. 11187 records in RAM. INFO 2026-06-08 09:10:27 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr17:80,278,894 INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 222067 as yet unmatched pairs. 11389 records in RAM. INFO 2026-06-08 09:10:28 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:80,375,790 INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 218618 as yet unmatched pairs. 7934 records in RAM. INFO 2026-06-08 09:10:31 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 2s. Last read position: chr17:81,696,949 INFO 2026-06-08 09:10:31 MarkDuplicates Tracking 216413 as yet unmatched pairs. 5721 records in RAM. INFO 2026-06-08 09:10:32 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr17:82,080,400 INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 214371 as yet unmatched pairs. 3678 records in RAM. INFO 2026-06-08 09:10:34 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr17:82,571,838 INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 211358 as yet unmatched pairs. 658 records in RAM. INFO 2026-06-08 09:10:36 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr18:3,742,463 INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 209500 as yet unmatched pairs. 12738 records in RAM. INFO 2026-06-08 09:10:37 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr18:14,478,252 INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 208094 as yet unmatched pairs. 11330 records in RAM. INFO 2026-06-08 09:10:39 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr18:21,791,373 INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 206872 as yet unmatched pairs. 10079 records in RAM. INFO 2026-06-08 09:10:40 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr18:35,041,629 INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 204768 as yet unmatched pairs. 7966 records in RAM. INFO 2026-06-08 09:10:43 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 2s. Last read position: chr18:36,215,794 INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 203165 as yet unmatched pairs. 6361 records in RAM. INFO 2026-06-08 09:10:45 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr18:50,284,387 INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 201848 as yet unmatched pairs. 5036 records in RAM. INFO 2026-06-08 09:10:47 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr18:62,261,606 INFO 2026-06-08 09:10:47 MarkDuplicates Tracking 201750 as yet unmatched pairs. 4933 records in RAM. INFO 2026-06-08 09:10:50 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 3s. Last read position: chr18:76,441,991 INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 198092 as yet unmatched pairs. 1269 records in RAM. INFO 2026-06-08 09:10:52 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 2s. Last read position: chr19:804,673 INFO 2026-06-08 09:10:52 MarkDuplicates Tracking 196738 as yet unmatched pairs. 79632 records in RAM. INFO 2026-06-08 09:10:54 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:1,254,992 INFO 2026-06-08 09:10:54 MarkDuplicates Tracking 194366 as yet unmatched pairs. 77251 records in RAM. INFO 2026-06-08 09:10:56 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:1,880,805 INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 192190 as yet unmatched pairs. 75075 records in RAM. INFO 2026-06-08 09:10:57 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:2,790,615 INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 189041 as yet unmatched pairs. 71922 records in RAM. INFO 2026-06-08 09:10:59 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:4,054,719 INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 186698 as yet unmatched pairs. 69576 records in RAM. INFO 2026-06-08 09:11:01 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:5,119,783 INFO 2026-06-08 09:11:01 MarkDuplicates Tracking 184859 as yet unmatched pairs. 67737 records in RAM. INFO 2026-06-08 09:11:03 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:6,366,324 INFO 2026-06-08 09:11:03 MarkDuplicates Tracking 182365 as yet unmatched pairs. 65235 records in RAM. INFO 2026-06-08 09:11:04 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:7,646,277 INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 180729 as yet unmatched pairs. 63589 records in RAM. INFO 2026-06-08 09:11:07 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr19:9,379,568 INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 178053 as yet unmatched pairs. 60904 records in RAM. INFO 2026-06-08 09:11:08 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:10,631,363 INFO 2026-06-08 09:11:08 MarkDuplicates Tracking 176745 as yet unmatched pairs. 59593 records in RAM. INFO 2026-06-08 09:11:10 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:11,357,693 INFO 2026-06-08 09:11:10 MarkDuplicates Tracking 174730 as yet unmatched pairs. 57577 records in RAM. INFO 2026-06-08 09:11:12 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:12,731,378 INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 173222 as yet unmatched pairs. 56068 records in RAM. INFO 2026-06-08 09:11:14 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:14,092,516 INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 170545 as yet unmatched pairs. 53390 records in RAM. INFO 2026-06-08 09:11:15 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:15,109,792 INFO 2026-06-08 09:11:15 MarkDuplicates Tracking 168245 as yet unmatched pairs. 51090 records in RAM. INFO 2026-06-08 09:11:17 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:15,265,441 INFO 2026-06-08 09:11:17 MarkDuplicates Tracking 169367 as yet unmatched pairs. 52205 records in RAM. INFO 2026-06-08 09:11:18 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:17,152,648 INFO 2026-06-08 09:11:18 MarkDuplicates Tracking 164452 as yet unmatched pairs. 47286 records in RAM. INFO 2026-06-08 09:11:20 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr19:18,177,253 INFO 2026-06-08 09:11:20 MarkDuplicates Tracking 163307 as yet unmatched pairs. 46141 records in RAM. INFO 2026-06-08 09:11:22 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr19:19,201,705 INFO 2026-06-08 09:11:22 MarkDuplicates Tracking 159916 as yet unmatched pairs. 42750 records in RAM. INFO 2026-06-08 09:11:24 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr19:29,207,270 INFO 2026-06-08 09:11:24 MarkDuplicates Tracking 158091 as yet unmatched pairs. 40923 records in RAM. INFO 2026-06-08 09:11:25 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:35,122,771 INFO 2026-06-08 09:11:25 MarkDuplicates Tracking 160711 as yet unmatched pairs. 43541 records in RAM. INFO 2026-06-08 09:11:27 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:36,003,267 INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 153801 as yet unmatched pairs. 36630 records in RAM. INFO 2026-06-08 09:11:29 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:38,343,867 INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 152087 as yet unmatched pairs. 34913 records in RAM. INFO 2026-06-08 09:11:31 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 2s. Last read position: chr19:39,433,386 INFO 2026-06-08 09:11:31 MarkDuplicates Tracking 151637 as yet unmatched pairs. 34460 records in RAM. INFO 2026-06-08 09:11:33 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 2s. Last read position: chr19:40,371,723 INFO 2026-06-08 09:11:33 MarkDuplicates Tracking 148910 as yet unmatched pairs. 31731 records in RAM. INFO 2026-06-08 09:11:37 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 3s. Last read position: chr19:41,898,558 INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 146973 as yet unmatched pairs. 29790 records in RAM. INFO 2026-06-08 09:11:39 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr19:42,291,677 INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 146986 as yet unmatched pairs. 29798 records in RAM. INFO 2026-06-08 09:11:41 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:44,497,311 INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 142482 as yet unmatched pairs. 25291 records in RAM. INFO 2026-06-08 09:11:42 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr19:45,052,888 INFO 2026-06-08 09:11:42 MarkDuplicates Tracking 140894 as yet unmatched pairs. 23694 records in RAM. INFO 2026-06-08 09:11:44 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:45,821,405 INFO 2026-06-08 09:11:44 MarkDuplicates Tracking 139008 as yet unmatched pairs. 21797 records in RAM. INFO 2026-06-08 09:11:46 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:47,341,423 INFO 2026-06-08 09:11:46 MarkDuplicates Tracking 135856 as yet unmatched pairs. 18630 records in RAM. INFO 2026-06-08 09:11:48 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr19:48,629,185 INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 133974 as yet unmatched pairs. 16748 records in RAM. INFO 2026-06-08 09:11:49 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:49,499,530 INFO 2026-06-08 09:11:49 MarkDuplicates Tracking 131807 as yet unmatched pairs. 14575 records in RAM. INFO 2026-06-08 09:11:51 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 2s. Last read position: chr19:49,781,777 INFO 2026-06-08 09:11:51 MarkDuplicates Tracking 129518 as yet unmatched pairs. 12284 records in RAM. INFO 2026-06-08 09:11:53 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 2s. Last read position: chr19:50,328,544 INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 128237 as yet unmatched pairs. 10986 records in RAM. INFO 2026-06-08 09:11:55 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr19:52,766,817 INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 125474 as yet unmatched pairs. 8220 records in RAM. INFO 2026-06-08 09:11:58 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 2s. Last read position: chr19:54,453,587 INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 124398 as yet unmatched pairs. 7138 records in RAM. INFO 2026-06-08 09:12:00 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr19:55,651,363 INFO 2026-06-08 09:12:00 MarkDuplicates Tracking 121719 as yet unmatched pairs. 4458 records in RAM. INFO 2026-06-08 09:12:01 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr19:57,841,774 INFO 2026-06-08 09:12:01 MarkDuplicates Tracking 120462 as yet unmatched pairs. 3188 records in RAM. INFO 2026-06-08 09:12:04 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 2s. Last read position: chr19:58,517,391 INFO 2026-06-08 09:12:04 MarkDuplicates Tracking 118583 as yet unmatched pairs. 1307 records in RAM. INFO 2026-06-08 09:12:07 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 3s. Last read position: chr20:845,153 INFO 2026-06-08 09:12:07 MarkDuplicates Tracking 118030 as yet unmatched pairs. 44890 records in RAM. INFO 2026-06-08 09:12:09 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr20:3,164,643 INFO 2026-06-08 09:12:09 MarkDuplicates Tracking 113913 as yet unmatched pairs. 40762 records in RAM. INFO 2026-06-08 09:12:11 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr20:5,111,545 INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 111812 as yet unmatched pairs. 38659 records in RAM. INFO 2026-06-08 09:12:12 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr20:17,570,192 INFO 2026-06-08 09:12:12 MarkDuplicates Tracking 111474 as yet unmatched pairs. 38312 records in RAM. INFO 2026-06-08 09:12:14 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr20:21,333,547 INFO 2026-06-08 09:12:14 MarkDuplicates Tracking 109425 as yet unmatched pairs. 36263 records in RAM. INFO 2026-06-08 09:12:16 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 2s. Last read position: chr20:25,303,557 INFO 2026-06-08 09:12:16 MarkDuplicates Tracking 107167 as yet unmatched pairs. 34003 records in RAM. INFO 2026-06-08 09:12:18 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr20:32,520,829 INFO 2026-06-08 09:12:18 MarkDuplicates Tracking 105237 as yet unmatched pairs. 32049 records in RAM. INFO 2026-06-08 09:12:20 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr20:34,526,268 INFO 2026-06-08 09:12:20 MarkDuplicates Tracking 105394 as yet unmatched pairs. 32198 records in RAM. INFO 2026-06-08 09:12:21 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr20:35,548,566 INFO 2026-06-08 09:12:21 MarkDuplicates Tracking 103152 as yet unmatched pairs. 29950 records in RAM. INFO 2026-06-08 09:12:23 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr20:36,198,024 INFO 2026-06-08 09:12:23 MarkDuplicates Tracking 99843 as yet unmatched pairs. 26630 records in RAM. INFO 2026-06-08 09:12:26 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 2s. Last read position: chr20:38,132,341 INFO 2026-06-08 09:12:26 MarkDuplicates Tracking 97198 as yet unmatched pairs. 23982 records in RAM. INFO 2026-06-08 09:12:29 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 3s. Last read position: chr20:41,493,862 INFO 2026-06-08 09:12:29 MarkDuplicates Tracking 96037 as yet unmatched pairs. 22820 records in RAM. INFO 2026-06-08 09:12:31 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 2s. Last read position: chr20:43,702,640 INFO 2026-06-08 09:12:31 MarkDuplicates Tracking 94625 as yet unmatched pairs. 21400 records in RAM. INFO 2026-06-08 09:12:33 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 2s. Last read position: chr20:45,420,170 INFO 2026-06-08 09:12:33 MarkDuplicates Tracking 93369 as yet unmatched pairs. 20143 records in RAM. INFO 2026-06-08 09:12:35 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr20:47,236,347 INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 90488 as yet unmatched pairs. 17260 records in RAM. INFO 2026-06-08 09:12:37 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 2s. Last read position: chr20:49,248,382 INFO 2026-06-08 09:12:37 MarkDuplicates Tracking 88985 as yet unmatched pairs. 15757 records in RAM. INFO 2026-06-08 09:12:39 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 2s. Last read position: chr20:51,625,150 INFO 2026-06-08 09:12:39 MarkDuplicates Tracking 87777 as yet unmatched pairs. 14545 records in RAM. INFO 2026-06-08 09:12:42 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 2s. Last read position: chr20:58,715,168 INFO 2026-06-08 09:12:42 MarkDuplicates Tracking 86199 as yet unmatched pairs. 12966 records in RAM. INFO 2026-06-08 09:12:44 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr20:59,892,626 INFO 2026-06-08 09:12:44 MarkDuplicates Tracking 84764 as yet unmatched pairs. 11524 records in RAM. INFO 2026-06-08 09:12:46 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chr20:62,327,364 INFO 2026-06-08 09:12:46 MarkDuplicates Tracking 81862 as yet unmatched pairs. 8616 records in RAM. INFO 2026-06-08 09:12:48 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr20:62,896,812 INFO 2026-06-08 09:12:48 MarkDuplicates Tracking 79654 as yet unmatched pairs. 6407 records in RAM. INFO 2026-06-08 09:12:49 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr20:63,565,746 INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 77623 as yet unmatched pairs. 4371 records in RAM. INFO 2026-06-08 09:12:51 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr20:63,961,262 INFO 2026-06-08 09:12:51 MarkDuplicates Tracking 74910 as yet unmatched pairs. 1658 records in RAM. INFO 2026-06-08 09:12:53 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,304 INFO 2026-06-08 09:12:53 MarkDuplicates Tracking 72775 as yet unmatched pairs. 11429 records in RAM. INFO 2026-06-08 09:12:55 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr21:13,936,928 INFO 2026-06-08 09:12:55 MarkDuplicates Tracking 72072 as yet unmatched pairs. 10718 records in RAM. INFO 2026-06-08 09:12:57 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr21:33,511,324 INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 70302 as yet unmatched pairs. 8941 records in RAM. INFO 2026-06-08 09:12:58 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr21:37,065,599 INFO 2026-06-08 09:12:58 MarkDuplicates Tracking 68582 as yet unmatched pairs. 7221 records in RAM. INFO 2026-06-08 09:13:00 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr21:39,343,085 INFO 2026-06-08 09:13:00 MarkDuplicates Tracking 67993 as yet unmatched pairs. 6625 records in RAM. INFO 2026-06-08 09:13:02 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr21:43,094,706 INFO 2026-06-08 09:13:02 MarkDuplicates Tracking 64781 as yet unmatched pairs. 3411 records in RAM. INFO 2026-06-08 09:13:03 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr21:45,998,160 INFO 2026-06-08 09:13:03 MarkDuplicates Tracking 62752 as yet unmatched pairs. 1382 records in RAM. INFO 2026-06-08 09:13:06 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 2s. Last read position: chr22:18,913,230 INFO 2026-06-08 09:13:06 MarkDuplicates Tracking 60846 as yet unmatched pairs. 35090 records in RAM. INFO 2026-06-08 09:13:09 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 3s. Last read position: chr22:20,712,720 INFO 2026-06-08 09:13:09 MarkDuplicates Tracking 59223 as yet unmatched pairs. 33467 records in RAM. INFO 2026-06-08 09:13:11 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 2s. Last read position: chr22:23,310,333 INFO 2026-06-08 09:13:11 MarkDuplicates Tracking 57727 as yet unmatched pairs. 31971 records in RAM. INFO 2026-06-08 09:13:13 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr22:25,704,126 INFO 2026-06-08 09:13:13 MarkDuplicates Tracking 54730 as yet unmatched pairs. 28969 records in RAM. INFO 2026-06-08 09:13:14 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr22:28,799,064 INFO 2026-06-08 09:13:14 MarkDuplicates Tracking 65948 as yet unmatched pairs. 40187 records in RAM. INFO 2026-06-08 09:13:16 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chr22:29,308,677 INFO 2026-06-08 09:13:16 MarkDuplicates Tracking 51148 as yet unmatched pairs. 25387 records in RAM. INFO 2026-06-08 09:13:18 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 1s. Last read position: chr22:31,126,425 INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 51284 as yet unmatched pairs. 25523 records in RAM. INFO 2026-06-08 09:13:19 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chr22:35,323,862 INFO 2026-06-08 09:13:19 MarkDuplicates Tracking 47388 as yet unmatched pairs. 21627 records in RAM. INFO 2026-06-08 09:13:21 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chr22:37,623,390 INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 45613 as yet unmatched pairs. 19851 records in RAM. INFO 2026-06-08 09:13:23 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: chr22:38,495,033 INFO 2026-06-08 09:13:23 MarkDuplicates Tracking 47275 as yet unmatched pairs. 21513 records in RAM. INFO 2026-06-08 09:13:26 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 2s. Last read position: chr22:40,409,520 INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 41743 as yet unmatched pairs. 15979 records in RAM. INFO 2026-06-08 09:13:27 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chr22:41,674,896 INFO 2026-06-08 09:13:27 MarkDuplicates Tracking 41057 as yet unmatched pairs. 15293 records in RAM. INFO 2026-06-08 09:13:29 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chr22:43,176,354 INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 38172 as yet unmatched pairs. 12406 records in RAM. INFO 2026-06-08 09:13:30 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chr22:46,386,435 INFO 2026-06-08 09:13:30 MarkDuplicates Tracking 41312 as yet unmatched pairs. 15543 records in RAM. INFO 2026-06-08 09:13:32 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chr22:46,534,643 INFO 2026-06-08 09:13:32 MarkDuplicates Tracking 37515 as yet unmatched pairs. 11746 records in RAM. INFO 2026-06-08 09:13:34 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chr22:50,219,353 INFO 2026-06-08 09:13:34 MarkDuplicates Tracking 31401 as yet unmatched pairs. 5626 records in RAM. INFO 2026-06-08 09:13:36 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chr22:50,463,366 INFO 2026-06-08 09:13:36 MarkDuplicates Tracking 28774 as yet unmatched pairs. 2998 records in RAM. INFO 2026-06-08 09:13:37 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 1s. Last read position: chr22:50,769,069 INFO 2026-06-08 09:13:37 MarkDuplicates Tracking 26377 as yet unmatched pairs. 601 records in RAM. INFO 2026-06-08 09:13:40 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 2s. Last read position: chrX:14,865,392 INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 23972 as yet unmatched pairs. 21238 records in RAM. INFO 2026-06-08 09:13:42 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 2s. Last read position: chrX:40,057,165 INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 23463 as yet unmatched pairs. 20728 records in RAM. INFO 2026-06-08 09:13:44 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chrX:46,613,301 INFO 2026-06-08 09:13:44 MarkDuplicates Tracking 20753 as yet unmatched pairs. 18018 records in RAM. INFO 2026-06-08 09:13:45 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 1s. Last read position: chrX:48,987,844 INFO 2026-06-08 09:13:45 MarkDuplicates Tracking 18792 as yet unmatched pairs. 16056 records in RAM. INFO 2026-06-08 09:13:47 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: chrX:53,422,517 INFO 2026-06-08 09:13:47 MarkDuplicates Tracking 16913 as yet unmatched pairs. 14177 records in RAM. INFO 2026-06-08 09:13:49 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 1s. Last read position: chrX:57,120,030 INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 15614 as yet unmatched pairs. 12878 records in RAM. INFO 2026-06-08 09:13:50 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 1s. Last read position: chrX:71,367,464 INFO 2026-06-08 09:13:50 MarkDuplicates Tracking 13694 as yet unmatched pairs. 10958 records in RAM. INFO 2026-06-08 09:13:52 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 1s. Last read position: chrX:77,683,892 INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 13869 as yet unmatched pairs. 11133 records in RAM. INFO 2026-06-08 09:13:55 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 2s. Last read position: chrX:103,586,984 INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 11662 as yet unmatched pairs. 8926 records in RAM. INFO 2026-06-08 09:13:57 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chrX:119,999,853 INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 8707 as yet unmatched pairs. 5971 records in RAM. INFO 2026-06-08 09:13:58 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 1s. Last read position: chrX:136,874,093 INFO 2026-06-08 09:13:58 MarkDuplicates Tracking 8628 as yet unmatched pairs. 5892 records in RAM. INFO 2026-06-08 09:14:00 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: chrX:153,955,009 INFO 2026-06-08 09:14:00 MarkDuplicates Tracking 5520 as yet unmatched pairs. 2784 records in RAM. INFO 2026-06-08 09:14:02 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 1s. Last read position: chrX:154,485,490 INFO 2026-06-08 09:14:02 MarkDuplicates Tracking 3573 as yet unmatched pairs. 837 records in RAM. INFO 2026-06-08 09:14:03 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,167 INFO 2026-06-08 09:14:03 MarkDuplicates Tracking 1929 as yet unmatched pairs. 25 records in RAM. INFO 2026-06-08 09:14:04 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 1s. Last read position: KI270742.1:109,532 INFO 2026-06-08 09:14:04 MarkDuplicates Tracking 17 as yet unmatched pairs. 4 records in RAM. INFO 2026-06-08 09:14:04 MarkDuplicates Read 640007612 records. 0 pairs never matched. INFO 2026-06-08 09:14:54 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140960; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:14:54 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 09:14:59 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 09:14:59 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:15:27 OpticalDuplicateFinder Large duplicate set. size = 1047 INFO 2026-06-08 09:15:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,973 INFO 2026-06-08 09:15:27 OpticalDuplicateFinder Large duplicate set. size = 1610 INFO 2026-06-08 09:15:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,730 INFO 2026-06-08 09:15:53 OpticalDuplicateFinder Large duplicate set. size = 1451 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,619 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1863 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,434 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1322 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,677 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1837 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,100 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1184 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,852 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1282 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,097 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1625 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,731 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1311 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,014 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1335 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,714 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1288 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,674 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,685 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1048 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,191 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1148 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,076 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder Large duplicate set. size = 1199 INFO 2026-06-08 09:15:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,232 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1012 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,161 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1298 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,326 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1378 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,747 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1019 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,581 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,654 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1389 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,700 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1782 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,923 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1424 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,805 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1139 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,294 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1523 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,545 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1215 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,490 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1560 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,908 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 2955 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,815 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,806 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 2330 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,944 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,153 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1182 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,437 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1047 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,424 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 1293 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,883 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 2357 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,939 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,651 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder Large duplicate set. size = 2172 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,852 INFO 2026-06-08 09:15:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,699 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder Large duplicate set. size = 1224 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,371 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder Large duplicate set. size = 1141 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,927 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder Large duplicate set. size = 1065 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,143 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder Large duplicate set. size = 1130 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,840 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder Large duplicate set. size = 1213 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,920 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder Large duplicate set. size = 1161 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,964 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,427 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder Large duplicate set. size = 1013 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,873 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder Large duplicate set. size = 1126 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,200 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder Large duplicate set. size = 1421 INFO 2026-06-08 09:15:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,035 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1394 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,947 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1540 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,429 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1095 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,062 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 3877 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,355 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,033 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,974 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1087 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,116 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1733 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,750 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1563 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,867 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 2197 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,287 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,914 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1930 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,960 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1970 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,582 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1706 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,513 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1544 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,937 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 2165 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,872 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,130 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1154 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,108 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1142 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,168 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 2362 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,910 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,741 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 2545 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,849 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,559 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1016 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,615 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,724 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1002 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,199 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1039 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,265 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1114 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,627 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1554 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,135 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1881 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,636 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1968 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,288 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1199 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,937 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1264 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,578 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder Large duplicate set. size = 1003 INFO 2026-06-08 09:15:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,793 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1178 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,256 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1071 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,184 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1259 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,521 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1208 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,079 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1235 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,262 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1006 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,385 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1357 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,637 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1024 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,165 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1066 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,038 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1309 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,308 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1067 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,305 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1463 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,852 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1306 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,717 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1185 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,724 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1156 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,856 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1978 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,766 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1652 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,712 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1171 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,670 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder Large duplicate set. size = 1255 INFO 2026-06-08 09:15:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,216 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder Large duplicate set. size = 2829 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,442 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,982 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder Large duplicate set. size = 3059 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,283 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,191 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,029 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder Large duplicate set. size = 1478 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,669 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder Large duplicate set. size = 1617 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,194 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder Large duplicate set. size = 1205 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,637 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder Large duplicate set. size = 1244 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,164 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder Large duplicate set. size = 1115 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,026 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder Large duplicate set. size = 1307 INFO 2026-06-08 09:15:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,023 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,441 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder Large duplicate set. size = 1187 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,831 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder Large duplicate set. size = 1024 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,305 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder Large duplicate set. size = 1763 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,297 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder Large duplicate set. size = 1042 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,752 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder Large duplicate set. size = 1138 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,574 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder Large duplicate set. size = 1017 INFO 2026-06-08 09:16:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,283 INFO 2026-06-08 09:16:30 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 09:16:31 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:17:43 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 09:17:46 MarkDuplicates After generateDuplicateIndexes freeMemory: 203897544; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:17:46 MarkDuplicates Marking 311805558 records as duplicates. INFO 2026-06-08 09:17:46 MarkDuplicates Found 24255335 optical duplicate clusters. INFO 2026-06-08 09:17:46 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 09:18:05 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:37,592,713 INFO 2026-06-08 09:18:23 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 18s. Last read position: chr1:120,520,593 INFO 2026-06-08 09:18:41 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:54s. Time for last 10,000,000: 17s. Last read position: chr1:151,760,028 INFO 2026-06-08 09:18:58 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:11s. Time for last 10,000,000: 16s. Last read position: chr1:156,767,749 INFO 2026-06-08 09:19:15 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:29s. Time for last 10,000,000: 17s. Last read position: chr1:200,739,946 INFO 2026-06-08 09:19:32 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:46s. Time for last 10,000,000: 17s. Last read position: chr1:231,275,456 INFO 2026-06-08 09:19:50 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:03s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,406 INFO 2026-06-08 09:20:07 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:20s. Time for last 10,000,000: 17s. Last read position: chr2:96,762,173 INFO 2026-06-08 09:20:25 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:38s. Time for last 10,000,000: 18s. Last read position: chr2:132,878,845 INFO 2026-06-08 09:20:43 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:57s. Time for last 10,000,000: 18s. Last read position: chr2:215,410,064 INFO 2026-06-08 09:21:01 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:15s. Time for last 10,000,000: 17s. Last read position: chr3:13,342,043 INFO 2026-06-08 09:21:20 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:34s. Time for last 10,000,000: 19s. Last read position: chr3:53,497,128 INFO 2026-06-08 09:21:39 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:52s. Time for last 10,000,000: 18s. Last read position: chr3:160,531,494 INFO 2026-06-08 09:21:56 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:10s. Time for last 10,000,000: 17s. Last read position: chr4:40,798,813 INFO 2026-06-08 09:22:14 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:27s. Time for last 10,000,000: 17s. Last read position: chr4:165,079,627 INFO 2026-06-08 09:22:31 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:45s. Time for last 10,000,000: 17s. Last read position: chr5:81,513,628 INFO 2026-06-08 09:22:48 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:01s. Time for last 10,000,000: 16s. Last read position: chr5:150,402,595 INFO 2026-06-08 09:23:04 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:18s. Time for last 10,000,000: 16s. Last read position: chr6:26,123,542 INFO 2026-06-08 09:23:23 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:36s. Time for last 10,000,000: 18s. Last read position: chr6:33,304,278 INFO 2026-06-08 09:23:41 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:54s. Time for last 10,000,000: 17s. Last read position: chr6:125,922,819 INFO 2026-06-08 09:23:58 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:11s. Time for last 10,000,000: 17s. Last read position: chr7:5,729,480 INFO 2026-06-08 09:24:18 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 20s. Last read position: chr7:92,093,188 INFO 2026-06-08 09:24:39 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:53s. Time for last 10,000,000: 21s. Last read position: chr7:104,168,492 INFO 2026-06-08 09:24:57 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:11s. Time for last 10,000,000: 18s. Last read position: chr8:27,605,002 INFO 2026-06-08 09:25:15 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:29s. Time for last 10,000,000: 17s. Last read position: chr8:115,604,746 INFO 2026-06-08 09:25:32 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:45s. Time for last 10,000,000: 16s. Last read position: chr8:143,865,836 INFO 2026-06-08 09:25:53 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:06s. Time for last 10,000,000: 20s. Last read position: chr9:41,128,156 INFO 2026-06-08 09:26:13 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:27s. Time for last 10,000,000: 20s. Last read position: chr9:129,111,489 INFO 2026-06-08 09:26:31 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:44s. Time for last 10,000,000: 17s. Last read position: chr10:27,504,421 INFO 2026-06-08 09:26:49 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:09:02s. Time for last 10,000,000: 17s. Last read position: chr10:92,573,895 INFO 2026-06-08 09:27:08 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:21s. Time for last 10,000,000: 18s. Last read position: chr11:837,967 INFO 2026-06-08 09:27:26 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:40s. Time for last 10,000,000: 18s. Last read position: chr11:62,517,466 INFO 2026-06-08 09:27:50 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:10:03s. Time for last 10,000,000: 23s. Last read position: chr11:68,892,355 INFO 2026-06-08 09:28:08 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:21s. Time for last 10,000,000: 17s. Last read position: chr11:77,928,504 INFO 2026-06-08 09:28:26 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:39s. Time for last 10,000,000: 17s. Last read position: chr12:31,087,941 INFO 2026-06-08 09:28:44 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:57s. Time for last 10,000,000: 18s. Last read position: chr12:57,254,922 INFO 2026-06-08 09:29:02 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:15s. Time for last 10,000,000: 18s. Last read position: chr12:122,978,464 INFO 2026-06-08 09:29:20 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:34s. Time for last 10,000,000: 18s. Last read position: chr14:21,017,567 INFO 2026-06-08 09:29:38 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:52s. Time for last 10,000,000: 18s. Last read position: chr14:73,492,088 INFO 2026-06-08 09:29:57 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:12:10s. Time for last 10,000,000: 18s. Last read position: chr15:40,844,620 INFO 2026-06-08 09:30:14 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:28s. Time for last 10,000,000: 17s. Last read position: chr15:79,311,310 INFO 2026-06-08 09:30:36 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:50s. Time for last 10,000,000: 22s. Last read position: chr16:2,762,659 INFO 2026-06-08 09:30:54 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:13:08s. Time for last 10,000,000: 17s. Last read position: chr16:18,339,478 INFO 2026-06-08 09:31:12 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:25s. Time for last 10,000,000: 17s. Last read position: chr16:29,435,920 INFO 2026-06-08 09:31:30 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:43s. Time for last 10,000,000: 17s. Last read position: chr16:68,231,194 INFO 2026-06-08 09:31:48 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:14:02s. Time for last 10,000,000: 18s. Last read position: chr17:18,663,010 INFO 2026-06-08 09:32:07 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:20s. Time for last 10,000,000: 18s. Last read position: chr17:38,561,684 INFO 2026-06-08 09:32:28 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:42s. Time for last 10,000,000: 21s. Last read position: chr17:39,709,409 INFO 2026-06-08 09:32:52 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:15:05s. Time for last 10,000,000: 23s. Last read position: chr17:39,717,328 INFO 2026-06-08 09:33:10 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:15:23s. Time for last 10,000,000: 17s. Last read position: chr17:39,727,455 INFO 2026-06-08 09:33:26 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:40s. Time for last 10,000,000: 16s. Last read position: chr17:42,698,953 INFO 2026-06-08 09:33:44 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:57s. Time for last 10,000,000: 17s. Last read position: chr17:64,148,939 INFO 2026-06-08 09:34:01 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:16:14s. Time for last 10,000,000: 17s. Last read position: chr17:82,571,838 INFO 2026-06-08 09:34:19 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:16:32s. Time for last 10,000,000: 17s. Last read position: chr19:1,254,992 INFO 2026-06-08 09:34:36 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:49s. Time for last 10,000,000: 17s. Last read position: chr19:12,731,378 INFO 2026-06-08 09:34:54 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:17:07s. Time for last 10,000,000: 17s. Last read position: chr19:38,343,867 INFO 2026-06-08 09:35:11 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:17:24s. Time for last 10,000,000: 17s. Last read position: chr19:49,499,530 INFO 2026-06-08 09:35:29 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:42s. Time for last 10,000,000: 18s. Last read position: chr20:5,111,545 INFO 2026-06-08 09:35:46 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:18:00s. Time for last 10,000,000: 17s. Last read position: chr20:43,702,640 INFO 2026-06-08 09:36:03 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:18:16s. Time for last 10,000,000: 16s. Last read position: chr20:63,961,262 INFO 2026-06-08 09:36:19 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:18:33s. Time for last 10,000,000: 16s. Last read position: chr22:23,310,333 INFO 2026-06-08 09:36:36 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:49s. Time for last 10,000,000: 16s. Last read position: chr22:43,176,354 INFO 2026-06-08 09:36:52 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:19:05s. Time for last 10,000,000: 16s. Last read position: chrX:53,422,517 INFO 2026-06-08 09:37:08 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:19:22s. Time for last 10,000,000: 16s. Last read position: KI270742.1:109,532 INFO 2026-06-08 09:37:16 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 09:37:16 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 09:37:16 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 09:37:16 MarkDuplicates Before output close freeMemory: 203869576; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:37:16 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 09:37:16 MarkDuplicates After output close freeMemory: 104104296; totalMemory: 134217728; maxMemory: 63585648640 [Mon Jun 08 09:37:16 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 45.81 minutes. Runtime.totalMemory()=134217728 ls: *cram: No such file or directory ls: *.crai: No such file or directory