File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/706a81b9621aa9cf6547828561f5f9/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (aih-tih-sc-00d05f-R1_A23WJ53LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/706a81b9621aa9cf6547828561f5f9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/706a81b9621aa9cf6547828561f5f9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/b7b7b739dbf5688f23db1e41df2aab/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/79bb784ea295dc6ecbbfdd3c13a3ad/aih-tih-sc-00d05f-R1_A23WJ53LT4_1
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: aih-tih-sc-00d05f-R1_A23WJ53LT4_1/abundance.h5
Successfully converted aih-tih-sc-00d05f-R1_A23WJ53LT4_1/abundance.h5 to aih-tih-sc-00d05f-R1_A23WJ53LT4_1_kallisto_mqc.tsv
  Sample: aih-tih-sc-00d05f-R1_A23WJ53LT4_1
  Mean Fragment Length: 143.3 bp
  Median Fragment Length: 132.0 bp
  pct_mito_est_counts: 0.007%
  pct_ribo_est_counts: 0.711%
  pct_hk_est_counts: 0.367%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.016%
  pct_ribo_tpm: 2.354%
  pct_hk_tpm: 0.618%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.004%