Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/97e1d66388f10d173154562bb26d41/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/1e8db4c219955b9a127ebb12febaac/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/1e8db4c219955b9a127ebb12febaac/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/d17b23fac9fb9d04f3f7a34f4ede70/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory