Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/d152ea5b08e6bc24b463c9c7f191b1/aih-tih-sc-af602e-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/929a0e8bdcff859cd824c985e53d17/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/929a0e8bdcff859cd824c985e53d17/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/a5f40d0623243083283fb0aa20f1db/aih-tih-sc-af602e-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory