Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/178411a9122b7ead03dfc265ee9ba9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/178411a9122b7ead03dfc265ee9ba9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/a0dd166dc22baa7aebfe2baeec7e84/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/4667bbc94c0e0c7ae9bb64638010cc/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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