Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/36741a3703fde51d1ce5e455b18e9c/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/f99b3cd17fb296563fd6f317be582b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/f99b3cd17fb296563fd6f317be582b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/9446de7408b0a778467528f34be9ec/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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