File Info

Filename
aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/dcd802fd407b93f657d3f0a5737708/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:53:24
                             Started mapping on |	Jun 08 07:56:02
                                    Finished on |	Jun 08 08:42:03
       Mapping speed, Million of reads per hour |	383.90

                          Number of input reads |	294433401
                      Average input read length |	246
                                    UNIQUE READS:
                   Uniquely mapped reads number |	280012646
                        Uniquely mapped reads % |	95.10%
                          Average mapped length |	246.65
                       Number of splices: Total |	309601054
            Number of splices: Annotated (sjdb) |	306033663
                       Number of splices: GT/AG |	306771073
                       Number of splices: GC/AG |	2069929
                       Number of splices: AT/AC |	227882
               Number of splices: Non-canonical |	532170
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.04
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.62
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9640100
             % of reads mapped to multiple loci |	3.27%
        Number of reads mapped to too many loci |	277259
             % of reads mapped to too many loci |	0.09%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	479998
       % of reads unmapped: too many mismatches |	0.16%
            Number of reads unmapped: too short |	2011046
                 % of reads unmapped: too short |	0.68%
                Number of reads unmapped: other |	234518
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3223497
                            % of chimeric reads |	1.09%