File Info

Filename
aih-tih-sc-9f6030-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/ce67f3e179c3f0de64656c52c0ce83/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:52:25
                             Started mapping on |	Jun 08 07:55:06
                                    Finished on |	Jun 08 08:36:27
       Mapping speed, Million of reads per hour |	381.18

                          Number of input reads |	262696538
                      Average input read length |	242
                                    UNIQUE READS:
                   Uniquely mapped reads number |	250960998
                        Uniquely mapped reads % |	95.53%
                          Average mapped length |	241.79
                       Number of splices: Total |	243342335
            Number of splices: Annotated (sjdb) |	240566963
                       Number of splices: GT/AG |	241276273
                       Number of splices: GC/AG |	1476632
                       Number of splices: AT/AC |	141413
               Number of splices: Non-canonical |	448017
                      Mismatch rate per base, % |	0.37%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.66
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7066556
             % of reads mapped to multiple loci |	2.69%
        Number of reads mapped to too many loci |	336341
             % of reads mapped to too many loci |	0.13%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	589202
       % of reads unmapped: too many mismatches |	0.22%
            Number of reads unmapped: too short |	1862499
                 % of reads unmapped: too short |	0.71%
                Number of reads unmapped: other |	216904
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2911198
                            % of chimeric reads |	1.11%