File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/28dd0e18edfed46f9e0befaf548240/.command.log
Size
8.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-2905df-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/28dd0e18edfed46f9e0befaf548240/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/65bd62021dae18982f9ff2db502c86/aih-tih-sc-2905df-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/823ddd61916e4ae76c4c85669e723c/aih-tih-sc-2905df-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/28dd0e18edfed46f9e0befaf548240/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TRAF5--GGA1
starfusion
arriba
ZMIZ1--LINC00595
starfusion
arriba
ZMIZ1--AC012560.1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
arriba
HSCB--ZNRF3
starfusion
arriba
NAV3--AC079362.1
starfusion
arriba
TSPAN14--PLCE1
starfusion
arriba
PRR14L--RBBP5
starfusion
arriba
TLK2--AC240565.1
starfusion
GTPBP1--FAM230B
starfusion
AC239859.5--AC013734.1
starfusion
NOX4--AP003400.1
starfusion
COL25A1--ETNPPL
starfusion
arriba
SLC24A5--SLC12A1
arriba
NIPBL--NIPBL
arriba
TXNRD2--AC021355.1
arriba
TXNRD2--GFRA2
arriba
FBXO7--RNU7-167P
arriba
FBXO7--HMGXB4
arriba
ENG--AL353780.1
arriba
ENG--OTX2P1
arriba
LYPLAL1--SBF1
arriba
AL360093.1--SBF1
arriba
CDKN2A--AC002378.1
arriba
PCDHA11--PCDHA13
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
TVP23C--CDRT4
arriba
GGA1--CRIP1P3
arriba
GGA1--GPR37L1
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
KLRC4--KLRK1
arriba
ASCC1--DMBT1L1
arriba
MTAP--CNTN2
arriba
GGA1--Y_RNA
arriba

  0%|          | 0/37 [00:00<?, ?it/s]
Processing TRAF5--GGA1:   0%|          | 0/37 [00:00<?, ?it/s]
Processing TRAF5--GGA1:   3%|▎         | 1/37 [00:00<00:03,  9.25it/s]
Processing ZMIZ1--LINC00595:   3%|▎         | 1/37 [00:00<00:03,  9.25it/s]
Processing ZMIZ1--LINC00595:   5%|▌         | 2/37 [00:00<00:03,  9.48it/s]
Processing ZMIZ1--AC012560.1:   5%|▌         | 2/37 [00:00<00:03,  9.48it/s]
Processing ZMIZ1--AC012560.1:   8%|▊         | 3/37 [00:00<00:03,  9.56it/s]
Processing TLK2P1--AC110079.1:   8%|▊         | 3/37 [00:00<00:03,  9.56it/s]
Processing TLK2P1--AC110079.1:  11%|█         | 4/37 [00:00<00:03,  9.59it/s]
Processing HSCB--ZNRF3:  11%|█         | 4/37 [00:00<00:03,  9.59it/s]       
Processing HSCB--ZNRF3:  14%|█▎        | 5/37 [00:00<00:03,  9.61it/s]
Processing NAV3--AC079362.1:  14%|█▎        | 5/37 [00:00<00:03,  9.61it/s]
Processing NAV3--AC079362.1:  16%|█▌        | 6/37 [00:00<00:03,  9.63it/s]
Processing TSPAN14--PLCE1:  16%|█▌        | 6/37 [00:00<00:03,  9.63it/s]  
Processing TSPAN14--PLCE1:  19%|█▉        | 7/37 [00:00<00:03,  9.63it/s]
Processing PRR14L--RBBP5:  19%|█▉        | 7/37 [00:00<00:03,  9.63it/s] 
Processing PRR14L--RBBP5:  22%|██▏       | 8/37 [00:00<00:03,  9.64it/s]
Processing TLK2--AC240565.1:  22%|██▏       | 8/37 [00:00<00:03,  9.64it/s]
Processing TLK2--AC240565.1:  24%|██▍       | 9/37 [00:00<00:02,  9.64it/s]
Processing GTPBP1--FAM230B:  24%|██▍       | 9/37 [00:00<00:02,  9.64it/s] 
Processing GTPBP1--FAM230B:  27%|██▋       | 10/37 [00:01<00:02,  9.64it/s]
Processing AC239859.5--AC013734.1:  27%|██▋       | 10/37 [00:01<00:02,  9.64it/s]
Processing AC239859.5--AC013734.1:  30%|██▉       | 11/37 [00:01<00:02,  9.65it/s]
Processing NOX4--AP003400.1:  30%|██▉       | 11/37 [00:01<00:02,  9.65it/s]      
Processing NOX4--AP003400.1:  32%|███▏      | 12/37 [00:01<00:02,  9.65it/s]
Processing COL25A1--ETNPPL:  32%|███▏      | 12/37 [00:01<00:02,  9.65it/s] 
Processing COL25A1--ETNPPL:  35%|███▌      | 13/37 [00:01<00:02,  9.65it/s]
Processing SLC24A5--SLC12A1:  35%|███▌      | 13/37 [00:01<00:02,  9.65it/s]
Processing SLC24A5--SLC12A1:  38%|███▊      | 14/37 [00:01<00:02,  9.65it/s]
Processing NIPBL--NIPBL:  38%|███▊      | 14/37 [00:01<00:02,  9.65it/s]    
Processing NIPBL--NIPBL:  41%|████      | 15/37 [00:01<00:02,  9.65it/s]
Processing TXNRD2--AC021355.1:  41%|████      | 15/37 [00:01<00:02,  9.65it/s]
Processing TXNRD2--AC021355.1:  43%|████▎     | 16/37 [00:01<00:02,  9.65it/s]
Processing TXNRD2--GFRA2:  43%|████▎     | 16/37 [00:01<00:02,  9.65it/s]     
Processing TXNRD2--GFRA2:  46%|████▌     | 17/37 [00:01<00:02,  9.65it/s]
Processing FBXO7--RNU7-167P:  46%|████▌     | 17/37 [00:01<00:02,  9.65it/s]
Processing FBXO7--RNU7-167P:  49%|████▊     | 18/37 [00:01<00:01,  9.65it/s]
Processing FBXO7--HMGXB4:  49%|████▊     | 18/37 [00:01<00:01,  9.65it/s]   
Processing FBXO7--HMGXB4:  51%|█████▏    | 19/37 [00:01<00:01,  9.65it/s]
Processing ENG--AL353780.1:  51%|█████▏    | 19/37 [00:01<00:01,  9.65it/s]
Processing ENG--AL353780.1:  54%|█████▍    | 20/37 [00:02<00:01,  9.65it/s]
Processing ENG--OTX2P1:  54%|█████▍    | 20/37 [00:02<00:01,  9.65it/s]    
Processing ENG--OTX2P1:  57%|█████▋    | 21/37 [00:02<00:01,  9.65it/s]
Processing LYPLAL1--SBF1:  57%|█████▋    | 21/37 [00:02<00:01,  9.65it/s]
Processing LYPLAL1--SBF1:  59%|█████▉    | 22/37 [00:02<00:01,  9.65it/s]
Processing AL360093.1--SBF1:  59%|█████▉    | 22/37 [00:02<00:01,  9.65it/s]
Processing AL360093.1--SBF1:  62%|██████▏   | 23/37 [00:02<00:01,  9.65it/s]
Processing CDKN2A--AC002378.1:  62%|██████▏   | 23/37 [00:02<00:01,  9.65it/s]
Processing CDKN2A--AC002378.1:  65%|██████▍   | 24/37 [00:02<00:01,  9.65it/s]
Processing PCDHA11--PCDHA13:  65%|██████▍   | 24/37 [00:02<00:01,  9.65it/s]  
Processing PCDHA11--PCDHA13:  68%|██████▊   | 25/37 [00:02<00:01,  9.65it/s]
Processing PCDHA11--PCDHAC1:  68%|██████▊   | 25/37 [00:02<00:01,  9.65it/s]
Processing PCDHA11--PCDHAC1:  70%|███████   | 26/37 [00:02<00:01,  9.65it/s]
Processing PCDHA11--PCDHAC2:  70%|███████   | 26/37 [00:02<00:01,  9.65it/s]
Processing PCDHA11--PCDHAC2:  73%|███████▎  | 27/37 [00:02<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  73%|███████▎  | 27/37 [00:02<00:01,  9.65it/s]   
Processing TVP23C--CDRT4:  76%|███████▌  | 28/37 [00:02<00:00,  9.65it/s]
Processing GGA1--CRIP1P3:  76%|███████▌  | 28/37 [00:02<00:00,  9.65it/s]
Processing GGA1--CRIP1P3:  78%|███████▊  | 29/37 [00:03<00:00,  9.65it/s]
Processing GGA1--GPR37L1:  78%|███████▊  | 29/37 [00:03<00:00,  9.65it/s]
Processing GGA1--GPR37L1:  81%|████████  | 30/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC1:  81%|████████  | 30/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC1:  84%|████████▍ | 31/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  84%|████████▍ | 31/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  86%|████████▋ | 32/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  86%|████████▋ | 32/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  89%|████████▉ | 33/37 [00:03<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  89%|████████▉ | 33/37 [00:03<00:00,  9.65it/s]   
Processing KLRC4--KLRK1:  92%|█████████▏| 34/37 [00:03<00:00,  9.65it/s]
Processing ASCC1--DMBT1L1:  92%|█████████▏| 34/37 [00:03<00:00,  9.65it/s]
Processing ASCC1--DMBT1L1:  95%|█████████▍| 35/37 [00:03<00:00,  9.64it/s]
Processing MTAP--CNTN2:  95%|█████████▍| 35/37 [00:03<00:00,  9.64it/s]   
Processing MTAP--CNTN2:  97%|█████████▋| 36/37 [00:03<00:00,  9.64it/s]
Processing GGA1--Y_RNA:  97%|█████████▋| 36/37 [00:03<00:00,  9.64it/s]
Processing GGA1--Y_RNA: 100%|██████████| 37/37 [00:03<00:00,  9.64it/s]
Processing GGA1--Y_RNA: 100%|██████████| 37/37 [00:03<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory