File Info
- Filename
- aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/28dd0e18edfed46f9e0befaf548240/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusions.csv
- Size
- 9.3 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-2905df-R1_A23WJ53LT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| TRAF5--GGA1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:211354467#chr22:37616922,reading-frame: out-of-frame,type: translocation,split_reads1: 170,split_reads2: 153,discordant_mates: 4,coverage1: 1952,coverage2: 2419,confidence: high | position: chr1:211354467:+#chr22:37616922:+,junction_reads: 333,spanning_reads: 4,ffmp: 1.1352 | |
| ZMIZ1--LINC00595 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr10:79216274#chr10:78479522,reading-frame: out-of-frame,type: duplication,split_reads1: 114,split_reads2: 47,discordant_mates: 7,coverage1: 8426,coverage2: 72,confidence: high | position: chr10:79216274:+#chr10:78524411:+,junction_reads: 133,spanning_reads: 4,ffmp: 0.4597 | |
| ZMIZ1--AC012560.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr10:79216274#chr10:78479522,reading-frame: out-of-frame,type: duplication,split_reads1: 114,split_reads2: 46,discordant_mates: 5,coverage1: 8426,coverage2: 72,confidence: high | position: chr10:79216274:+#chr10:78525330:+,junction_reads: 47,spanning_reads: 2,ffmp: 0.1601 | |
| TLK2P1--AC110079.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:34039043#chr4:118595912,reading-frame: .,type: translocation,split_reads1: 29,split_reads2: 1,discordant_mates: 0,coverage1: 407,coverage2: 362,confidence: high | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 44,spanning_reads: 0,ffmp: 0.1316 | |
| HSCB--ZNRF3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr22:28746008#chr22:28987076,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 33,split_reads2: 9,discordant_mates: 1,coverage1: 515,coverage2: 143,confidence: high | position: chr22:28746008:+#chr22:28987076:+,junction_reads: 43,spanning_reads: 1,ffmp: 0.1482 | |
| NAV3--AC079362.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr12:77941133#chr12:78449201,reading-frame: out-of-frame,type: inversion,split_reads1: 40,split_reads2: 2,discordant_mates: 8,coverage1: 1352,coverage2: 17,confidence: high | position: chr12:77941133:+#chr12:78449201:-,junction_reads: 43,spanning_reads: 8,ffmp: 0.1626 | |
| TSPAN14--PLCE1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr10:80468687#chr10:94132174,reading-frame: .,type: deletion,split_reads1: 2,split_reads2: 32,discordant_mates: 0,coverage1: 1101,coverage2: 385,confidence: high | position: chr10:80454371:+#chr10:94132174:+,junction_reads: 37,spanning_reads: 0,ffmp: 0.1246 | |
| PRR14L--RBBP5 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr22:31684882#chr1:205105168,reading-frame: .,type: translocation,split_reads1: 9,split_reads2: 26,discordant_mates: 3,coverage1: 22,coverage2: 1253,confidence: high | position: chr22:31684882:-#chr1:205105168:-,junction_reads: 37,spanning_reads: 3,ffmp: 0.1341 | |
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 35,spanning_reads: 1,ffmp: 0.0334 | ||
| GTPBP1--FAM230B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:38729662:+#chr22:21178431:+,junction_reads: 23,spanning_reads: 0,ffmp: 0.0775 | ||
| AC239859.5--AC013734.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:143419625:-#chrY:26453985:+,junction_reads: 20,spanning_reads: 0,ffmp: 0.013 | ||
| NOX4--AP003400.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:89440688:-#chr11:89589698:-,junction_reads: 16,spanning_reads: 7,ffmp: 0.0661 | ||
| COL25A1--ETNPPL | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr4:109300583#chr4:108759908,reading-frame: in-frame,type: deletion,split_reads1: 5,split_reads2: 3,discordant_mates: 0,coverage1: 110,coverage2: 35,confidence: high | position: chr4:109300583:-#chr4:108759908:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0269 | |
| SLC24A5--SLC12A1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:48122036#chr15:48285106,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 185,split_reads2: 239,discordant_mates: 5,coverage1: 7927,coverage2: 1343,confidence: high | ||
| NIPBL--NIPBL | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:37038738#chr5:37014683,reading-frame: in-frame,type: duplication/non-canonical_splicing,split_reads1: 83,split_reads2: 78,discordant_mates: 1,coverage1: 1921,coverage2: 1864,confidence: high | ||
| TXNRD2--AC021355.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:19895407#chr8:21487752,reading-frame: out-of-frame,type: translocation,split_reads1: 125,split_reads2: 25,discordant_mates: 1,coverage1: 1084,coverage2: 37,confidence: high | ||
| TXNRD2--GFRA2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:19895407#chr8:21487752,reading-frame: out-of-frame,type: translocation,split_reads1: 125,split_reads2: 25,discordant_mates: 1,coverage1: 1084,coverage2: 37,confidence: high | ||
| FBXO7--RNU7-167P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:32485209#chr22:35255545,reading-frame: out-of-frame,type: deletion,split_reads1: 79,split_reads2: 14,discordant_mates: 2,coverage1: 1937,coverage2: 40,confidence: high | ||
| FBXO7--HMGXB4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:32485209#chr22:35255545,reading-frame: out-of-frame,type: deletion,split_reads1: 79,split_reads2: 14,discordant_mates: 2,coverage1: 1937,coverage2: 40,confidence: high | ||
| ENG--AL353780.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:127854289#chr9:75656750,reading-frame: out-of-frame,type: inversion,split_reads1: 49,split_reads2: 30,discordant_mates: 0,coverage1: 1483,coverage2: 46,confidence: high | ||
| ENG--OTX2P1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:127854289#chr9:75656750,reading-frame: out-of-frame,type: inversion,split_reads1: 49,split_reads2: 30,discordant_mates: 0,coverage1: 1483,coverage2: 46,confidence: high | ||
| LYPLAL1--SBF1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:219215180#chr22:50464695,reading-frame: .,type: translocation,split_reads1: 24,split_reads2: 53,discordant_mates: 2,coverage1: 44,coverage2: 3876,confidence: high | ||
| AL360093.1--SBF1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:219215180#chr22:50464695,reading-frame: .,type: translocation,split_reads1: 24,split_reads2: 53,discordant_mates: 2,coverage1: 44,coverage2: 3876,confidence: high | ||
| CDKN2A--AC002378.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:21994139#chr22:30206985,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 63,split_reads2: 14,discordant_mates: 1,coverage1: 2813,coverage2: 21,confidence: high | ||
| PCDHA11--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 39,discordant_mates: 0,coverage1: 920,coverage2: 1050,confidence: high | ||
| PCDHA11--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 39,discordant_mates: 0,coverage1: 920,coverage2: 1050,confidence: high | ||
| PCDHA11--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 39,discordant_mates: 0,coverage1: 920,coverage2: 1050,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 32,split_reads2: 24,discordant_mates: 0,coverage1: 541,coverage2: 200,confidence: high | |
| GGA1--CRIP1P3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:37608903#chr1:202109041,reading-frame: out-of-frame,type: translocation,split_reads1: 16,split_reads2: 30,discordant_mates: 0,coverage1: 863,coverage2: 51,confidence: high | ||
| GGA1--GPR37L1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:37608903#chr1:202109041,reading-frame: out-of-frame,type: translocation,split_reads1: 16,split_reads2: 30,discordant_mates: 0,coverage1: 863,coverage2: 51,confidence: high | ||
| PCDHA4--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 9,split_reads2: 22,discordant_mates: 0,coverage1: 462,coverage2: 1050,confidence: high | ||
| PCDHA4--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 9,split_reads2: 22,discordant_mates: 0,coverage1: 462,coverage2: 1050,confidence: high | ||
| PCDHA4--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 9,split_reads2: 22,discordant_mates: 0,coverage1: 462,coverage2: 1050,confidence: high | ||
| KLRC4--KLRK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:10407636#chr12:10388875,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 10,split_reads2: 12,discordant_mates: 1,coverage1: 111,coverage2: 296,confidence: high | ||
| ASCC1--DMBT1L1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:72152869#chr10:122750549,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 10,split_reads2: 7,discordant_mates: 1,coverage1: 508,coverage2: 13,confidence: high | ||
| MTAP--CNTN2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:21890838#chr1:205057921,reading-frame: stop-codon,type: translocation,split_reads1: 3,split_reads2: 8,discordant_mates: 1,coverage1: 10,coverage2: 350,confidence: high | ||
| GGA1--Y_RNA | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:37608903#chr1:202087891,reading-frame: out-of-frame,type: translocation,split_reads1: 1,split_reads2: 9,discordant_mates: 0,coverage1: 863,coverage2: 75,confidence: high |
38 rows