Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/84d35f556dcf19224b0f90e4a68ce9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/84d35f556dcf19224b0f90e4a68ce9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/9c1ce8dc6732557c25893383f532dc/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/a41b18661240e2ea43f77b9dfc7746/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory