Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/5c36837c638fc793025d7601003bd6/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/321d1db9df66a0d99fa3d187d7ee18/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/321d1db9df66a0d99fa3d187d7ee18/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-0992e4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-0992e4-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-0992e4-R1_A23WJ53LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:53:42.029 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:53:42 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-0992e4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-0992e4-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-0992e4-R1_A23WJ53LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:53:42 GMT 2026] Executing as ?@nf-fb321d1db9df66a0d99fa3d187d7ee18-ee687-42b7l on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:53:42 MarkDuplicates Start of doWork freeMemory: 105493544; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:53:42 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:53:42 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,046,219
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 6707 as yet unmatched pairs. 4578 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,315,541
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 4695 as yet unmatched pairs. 375 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:1,701,468
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 7158 as yet unmatched pairs. 577 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:3,628,480
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 8991 as yet unmatched pairs. 177 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:8,541,214
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 10903 as yet unmatched pairs. 278 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:11,150,158
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 12666 as yet unmatched pairs. 274 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:15,440,529
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 19318 as yet unmatched pairs. 5214 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:15,942,077
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 15975 as yet unmatched pairs. 158 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:17,228,932
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 21557 as yet unmatched pairs. 3944 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 3s. Last read position: chr1:19,342,782
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 21109 as yet unmatched pairs. 1698 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:21,823,301
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 23982 as yet unmatched pairs. 2811 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:21,852,984
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 23707 as yet unmatched pairs. 695 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:21,977,045
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 27769 as yet unmatched pairs. 2854 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:22,644,112
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 27412 as yet unmatched pairs. 791 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:25,563,072
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 28415 as yet unmatched pairs. 163 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:26,863,678
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 31795 as yet unmatched pairs. 1758 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:28,742,923
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 32214 as yet unmatched pairs. 366 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:31,671,648
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 35450 as yet unmatched pairs. 1856 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 3s. Last read position: chr1:32,770,109
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 36701 as yet unmatched pairs. 1269 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:35,851,017
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 37391 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:39,283,420
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 40516 as yet unmatched pairs. 1432 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:40,060,152
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 41932 as yet unmatched pairs. 1308 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 3s. Last read position: chr1:43,419,847
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 42590 as yet unmatched pairs. 183 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:44,806,270
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 45183 as yet unmatched pairs. 825 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:47,368,467
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 46812 as yet unmatched pairs. 671 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:54,854,216
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 47913 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:64,845,594
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 50332 as yet unmatched pairs. 669 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:85,580,959
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 53499 as yet unmatched pairs. 2303 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:94,220,324
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 52917 as yet unmatched pairs. 113 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:102,965,489
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 59004 as yet unmatched pairs. 4510 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:103,620,582
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 57982 as yet unmatched pairs. 2170 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:103,718,327
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 59712 as yet unmatched pairs. 3387 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:110,341,400
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 58727 as yet unmatched pairs. 767 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:114,402,841
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 60239 as yet unmatched pairs. 473 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:117,990,900
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 61524 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:119,969,511
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 65135 as yet unmatched pairs. 1944 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:145,936,907
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 64544 as yet unmatched pairs. 400 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:148,549,016
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 65659 as yet unmatched pairs. 698 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,074
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 65737 as yet unmatched pairs. 87 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:150,625,661
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 67831 as yet unmatched pairs. 508 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:151,760,094
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 69227 as yet unmatched pairs. 259 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr1:153,948,014
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 70533 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:154,597,161
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 73187 as yet unmatched pairs. 1189 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:155,189,653
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 74252 as yet unmatched pairs. 586 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:155,765,018
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 75332 as yet unmatched pairs. 399 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr1:156,134,519
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 89980 as yet unmatched pairs. 12847 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:156,137,207
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 90870 as yet unmatched pairs. 11912 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:156,734,039
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 81157 as yet unmatched pairs. 281 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:160,415,893
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 82596 as yet unmatched pairs. 108 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr1:162,503,810
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 84713 as yet unmatched pairs. 528 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:170,046,733
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 86000 as yet unmatched pairs. 266 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:179,126,450
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 87856 as yet unmatched pairs. 561 records in RAM.
INFO 2026-06-08 08:55:45 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr1:183,136,546
INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 89682 as yet unmatched pairs. 675 records in RAM.
INFO 2026-06-08 08:55:47 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:186,145,463
INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 90783 as yet unmatched pairs. 88 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:198,752,746
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 92153 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:202,750,671
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 93894 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr1:204,986,038
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 95430 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr1:207,023,116
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 98069 as yet unmatched pairs. 1068 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr1:209,627,388
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 102090 as yet unmatched pairs. 3330 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr1:219,973,213
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 100653 as yet unmatched pairs. 152 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr1:225,423,960
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 102194 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr1:228,279,210
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 103979 as yet unmatched pairs. 218 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr1:235,138,161
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 105923 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr1:244,864,065
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 108748 as yet unmatched pairs. 1427 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 3s. Last read position: chr2:8,776,826
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 109420 as yet unmatched pairs. 108176 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr2:20,202,242
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 111132 as yet unmatched pairs. 109876 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:24,842,264
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 112579 as yet unmatched pairs. 111320 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:27,343,310
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 114662 as yet unmatched pairs. 113392 records in RAM.
INFO 2026-06-08 08:56:20 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 3s. Last read position: chr2:30,158,766
INFO 2026-06-08 08:56:20 MarkDuplicates Tracking 116400 as yet unmatched pairs. 115116 records in RAM.
INFO 2026-06-08 08:56:23 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 183958 as yet unmatched pairs. 112246 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,359
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 820224 as yet unmatched pairs. 83097 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 872397 as yet unmatched pairs. 80830 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:37,344,779
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 926525 as yet unmatched pairs. 77523 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:43,586,417
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 925652 as yet unmatched pairs. 76617 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:53,937,503
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 923292 as yet unmatched pairs. 74233 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:55,388,864
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 922059 as yet unmatched pairs. 72986 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:65,344,830
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 920233 as yet unmatched pairs. 71126 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:70,674,700
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 918547 as yet unmatched pairs. 69421 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:74,430,634
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 917311 as yet unmatched pairs. 68170 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:79,157,637
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 918161 as yet unmatched pairs. 69012 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:86,986,794
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 913635 as yet unmatched pairs. 64474 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:96,551,252
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 912691 as yet unmatched pairs. 63510 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:101,295,071
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 911170 as yet unmatched pairs. 61979 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:108,753,048
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 909951 as yet unmatched pairs. 60750 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:109,836,565
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 908942 as yet unmatched pairs. 59730 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:112,389,785
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 907755 as yet unmatched pairs. 58529 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:113,934,327
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 907409 as yet unmatched pairs. 58174 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:130,836,934
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 905068 as yet unmatched pairs. 55796 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:152,676,423
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 903768 as yet unmatched pairs. 54474 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:162,215,922
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 902452 as yet unmatched pairs. 53122 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:174,753,639
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 900649 as yet unmatched pairs. 51285 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:182,952,844
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 899682 as yet unmatched pairs. 50298 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:188,992,192
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 904017 as yet unmatched pairs. 54609 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:188,999,548
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 902712 as yet unmatched pairs. 53287 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:189,009,029
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 896111 as yet unmatched pairs. 46664 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:189,075,422
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 893136 as yet unmatched pairs. 43668 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr2:197,402,114
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 890812 as yet unmatched pairs. 41326 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:203,180,495
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 888820 as yet unmatched pairs. 39304 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,473
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 912940 as yet unmatched pairs. 63412 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,505
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 913764 as yet unmatched pairs. 64233 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr2:215,371,933
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 916899 as yet unmatched pairs. 67354 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,243
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 916653 as yet unmatched pairs. 67093 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,360
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 906203 as yet unmatched pairs. 56640 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:215,378,180
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 908494 as yet unmatched pairs. 58916 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr2:215,382,212
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 912126 as yet unmatched pairs. 62536 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,689
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 897992 as yet unmatched pairs. 48398 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr2:215,392,981
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 893077 as yet unmatched pairs. 43466 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,835
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 887365 as yet unmatched pairs. 37740 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,360
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 896115 as yet unmatched pairs. 46481 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,314
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 905703 as yet unmatched pairs. 56064 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,410,091
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 889918 as yet unmatched pairs. 40271 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,423,360
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 879719 as yet unmatched pairs. 30067 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,181
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 888725 as yet unmatched pairs. 39059 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,348
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 890865 as yet unmatched pairs. 41186 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr2:216,148,187
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 865312 as yet unmatched pairs. 15624 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr2:218,245,472
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 864448 as yet unmatched pairs. 14737 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr2:219,386,304
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 861716 as yet unmatched pairs. 11976 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr2:226,797,682
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 860069 as yet unmatched pairs. 10310 records in RAM.
INFO 2026-06-08 08:57:57 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr2:231,712,939
INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 857703 as yet unmatched pairs. 7932 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr2:237,344,462
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 859300 as yet unmatched pairs. 9479 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr2:237,371,951
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 860681 as yet unmatched pairs. 10844 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr2:237,859,704
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 853430 as yet unmatched pairs. 3578 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 3s. Last read position: chr2:241,248,093
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 851746 as yet unmatched pairs. 1829 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr3:8,548,925
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 849558 as yet unmatched pairs. 42808 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr3:12,936,333
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 847704 as yet unmatched pairs. 40936 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:25,778,605
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 845871 as yet unmatched pairs. 39081 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:39,106,977
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 844042 as yet unmatched pairs. 37219 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr3:44,929,328
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 842705 as yet unmatched pairs. 35834 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:47,701,332
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 840572 as yet unmatched pairs. 33693 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:48,581,911
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 840989 as yet unmatched pairs. 34105 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr3:49,122,817
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 837451 as yet unmatched pairs. 30555 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr3:50,058,535
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 835017 as yet unmatched pairs. 28107 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr3:52,478,556
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 834759 as yet unmatched pairs. 27816 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr3:58,081,694
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 832149 as yet unmatched pairs. 25180 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:69,181,636
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 830061 as yet unmatched pairs. 23072 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr3:99,849,092
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 829263 as yet unmatched pairs. 22263 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:111,932,369
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 827291 as yet unmatched pairs. 20274 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr3:121,690,974
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 825964 as yet unmatched pairs. 18939 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr3:124,848,457
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 824935 as yet unmatched pairs. 17905 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr3:128,650,680
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 822041 as yet unmatched pairs. 14995 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr3:133,574,207
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 820601 as yet unmatched pairs. 13542 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr3:143,012,222
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 819018 as yet unmatched pairs. 11933 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr3:149,369,859
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 821420 as yet unmatched pairs. 14321 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr3:156,678,297
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 816359 as yet unmatched pairs. 9243 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr3:172,228,689
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 814449 as yet unmatched pairs. 7299 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr3:184,188,179
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 813096 as yet unmatched pairs. 5911 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr3:186,787,247
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 812232 as yet unmatched pairs. 5037 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 3s. Last read position: chr3:195,306,541
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 810081 as yet unmatched pairs. 2868 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr3:195,781,641
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 812230 as yet unmatched pairs. 5009 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr3:196,807,905
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 808091 as yet unmatched pairs. 865 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr4:1,171,004
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 807524 as yet unmatched pairs. 27580 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr4:2,694,909
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 804425 as yet unmatched pairs. 24447 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr4:6,696,891
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 802837 as yet unmatched pairs. 22841 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr4:10,116,113
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 801016 as yet unmatched pairs. 20988 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr4:30,721,646
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 799519 as yet unmatched pairs. 19482 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr4:48,382,639
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 797469 as yet unmatched pairs. 17407 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr4:56,977,243
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 795855 as yet unmatched pairs. 15775 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr4:71,453,528
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 794269 as yet unmatched pairs. 14171 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr4:76,749,073
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 792892 as yet unmatched pairs. 12785 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr4:85,853,764
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 790870 as yet unmatched pairs. 10734 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr4:99,085,119
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 789377 as yet unmatched pairs. 9216 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr4:116,319,960
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 787797 as yet unmatched pairs. 7610 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr4:128,999,708
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 786449 as yet unmatched pairs. 6245 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr4:151,014,543
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 785535 as yet unmatched pairs. 5298 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr4:159,322,341
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 783459 as yet unmatched pairs. 3205 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr4:184,629,209
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 781757 as yet unmatched pairs. 1480 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr5:447,663
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 780367 as yet unmatched pairs. 43798 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:14,286,989
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 781725 as yet unmatched pairs. 45139 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:14,488,191
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 778394 as yet unmatched pairs. 41806 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr5:34,914,828
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 775291 as yet unmatched pairs. 38672 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:50,403,205
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 773974 as yet unmatched pairs. 37338 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:65,452,134
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 772217 as yet unmatched pairs. 35558 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:72,199,101
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 771066 as yet unmatched pairs. 34390 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:79,988,496
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 769655 as yet unmatched pairs. 32959 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr5:83,540,005
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 768992 as yet unmatched pairs. 32284 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:96,729,619
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 767896 as yet unmatched pairs. 31170 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:113,579,627
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 765322 as yet unmatched pairs. 28581 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr5:132,272,037
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 764415 as yet unmatched pairs. 27648 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr5:135,571,130
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 763208 as yet unmatched pairs. 26420 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr5:138,810,108
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 761591 as yet unmatched pairs. 24793 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr5:140,807,453
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 758840 as yet unmatched pairs. 22025 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr5:141,375,214
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 757371 as yet unmatched pairs. 20552 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr5:141,869,161
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 756304 as yet unmatched pairs. 19469 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr5:149,620,388
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 754361 as yet unmatched pairs. 17504 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr5:150,130,543
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 757924 as yet unmatched pairs. 21062 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,578
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 778544 as yet unmatched pairs. 41674 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,166
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 762329 as yet unmatched pairs. 25447 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr5:151,467,099
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 747520 as yet unmatched pairs. 10636 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 2s. Last read position: chr5:157,564,387
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 745984 as yet unmatched pairs. 9069 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,880
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 745153 as yet unmatched pairs. 8219 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr5:177,093,723
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 742735 as yet unmatched pairs. 5786 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr5:178,211,808
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 741111 as yet unmatched pairs. 4144 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr5:179,821,104
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 745938 as yet unmatched pairs. 8963 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr5:180,792,557
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 738829 as yet unmatched pairs. 1832 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr6:4,935,633
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 735992 as yet unmatched pairs. 46186 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr6:8,062,582
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 734076 as yet unmatched pairs. 44265 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:24,697,882
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 732697 as yet unmatched pairs. 42857 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:29,630,472
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 731408 as yet unmatched pairs. 41552 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:30,602,101
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 730826 as yet unmatched pairs. 40959 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:31,170,407
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 728447 as yet unmatched pairs. 38564 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:31,633,422
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 727009 as yet unmatched pairs. 37109 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:31,827,990
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 726245 as yet unmatched pairs. 36338 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:32,026,309
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 724902 as yet unmatched pairs. 34988 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr6:32,829,495
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 721972 as yet unmatched pairs. 32049 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 3s. Last read position: chr6:33,305,231
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 723142 as yet unmatched pairs. 33203 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:33,695,750
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 718659 as yet unmatched pairs. 28701 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:36,499,886
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 716578 as yet unmatched pairs. 26611 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr6:42,142,300
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 715217 as yet unmatched pairs. 25231 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:43,533,933
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 712796 as yet unmatched pairs. 22793 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr6:47,286,130
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 712141 as yet unmatched pairs. 22126 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr6:56,616,351
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 709845 as yet unmatched pairs. 19794 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr6:75,130,928
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 708807 as yet unmatched pairs. 18748 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr6:83,169,732
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 706509 as yet unmatched pairs. 16449 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr6:107,633,703
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 704763 as yet unmatched pairs. 14691 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr6:116,121,734
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 704766 as yet unmatched pairs. 14680 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr6:130,441,485
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 701738 as yet unmatched pairs. 11626 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr6:138,404,510
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 700570 as yet unmatched pairs. 10436 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr6:150,831,794
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 698436 as yet unmatched pairs. 8283 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr6:157,181,088
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 697032 as yet unmatched pairs. 6870 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr6:158,784,672
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 700289 as yet unmatched pairs. 10105 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr6:160,096,569
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 694117 as yet unmatched pairs. 3928 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr6:169,231,975
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 693102 as yet unmatched pairs. 2892 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 2s. Last read position: chr7:512,440
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 690922 as yet unmatched pairs. 54321 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:2,605,875
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 688144 as yet unmatched pairs. 51531 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,677
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 693212 as yet unmatched pairs. 56582 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,645
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 691459 as yet unmatched pairs. 54823 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr7:6,509,176
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 682824 as yet unmatched pairs. 46176 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 2s. Last read position: chr7:22,511,851
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 681378 as yet unmatched pairs. 44720 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr7:32,580,762
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 680024 as yet unmatched pairs. 43359 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr7:43,876,530
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 678314 as yet unmatched pairs. 41616 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr7:44,112,719
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 679643 as yet unmatched pairs. 42934 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr7:45,917,416
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 679224 as yet unmatched pairs. 42506 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr7:55,202,537
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 674994 as yet unmatched pairs. 38258 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr7:73,112,165
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 671636 as yet unmatched pairs. 34850 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr7:74,252,474
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 670105 as yet unmatched pairs. 33316 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr7:75,980,338
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 669472 as yet unmatched pairs. 32672 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr7:77,696,480
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 667377 as yet unmatched pairs. 30572 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 2s. Last read position: chr7:92,388,005
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 665949 as yet unmatched pairs. 29139 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr7:94,408,337
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 681142 as yet unmatched pairs. 44320 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr7:94,417,748
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 667539 as yet unmatched pairs. 30682 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr7:94,427,258
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 667933 as yet unmatched pairs. 31042 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr7:99,385,706
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 661244 as yet unmatched pairs. 24340 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr7:100,577,394
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 657821 as yet unmatched pairs. 20903 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr7:101,130,491
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 658165 as yet unmatched pairs. 21241 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr7:103,086,655
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 654762 as yet unmatched pairs. 17835 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 66s. Last read position: chr7:108,564,957
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 653162 as yet unmatched pairs. 16217 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr7:117,642,573
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 651881 as yet unmatched pairs. 14917 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr7:128,533,659
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 650244 as yet unmatched pairs. 13271 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr7:130,382,137
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 660133 as yet unmatched pairs. 23149 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr7:134,950,408
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 649211 as yet unmatched pairs. 12198 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr7:140,129,499
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 645915 as yet unmatched pairs. 8888 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr7:142,751,879
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 667815 as yet unmatched pairs. 30783 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr7:142,773,447
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 653782 as yet unmatched pairs. 16736 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr7:144,318,340
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 641381 as yet unmatched pairs. 4330 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr7:151,064,648
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 640402 as yet unmatched pairs. 3340 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr7:156,836,823
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 637759 as yet unmatched pairs. 666 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr8:11,847,056
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 638103 as yet unmatched pairs. 30480 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr8:22,197,309
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 635082 as yet unmatched pairs. 27446 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr8:23,682,682
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 632719 as yet unmatched pairs. 25064 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr8:33,549,431
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 631064 as yet unmatched pairs. 23391 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr8:38,424,529
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 630781 as yet unmatched pairs. 23094 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr8:42,187,547
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 629473 as yet unmatched pairs. 21777 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr8:60,830,420
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 625946 as yet unmatched pairs. 18238 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 2s. Last read position: chr8:73,292,292
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 625112 as yet unmatched pairs. 17392 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:99,398,308
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 622858 as yet unmatched pairs. 15114 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 2s. Last read position: chr8:109,642,871
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 621286 as yet unmatched pairs. 13534 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr8:130,058,054
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 619968 as yet unmatched pairs. 12205 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 2s. Last read position: chr8:143,574,822
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 619221 as yet unmatched pairs. 11440 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,788
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 617022 as yet unmatched pairs. 9234 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr8:143,918,603
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 619545 as yet unmatched pairs. 11755 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,547
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 614018 as yet unmatched pairs. 6216 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr8:143,934,870
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 614786 as yet unmatched pairs. 6968 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr8:144,515,750
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 608250 as yet unmatched pairs. 428 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr9:14,307,226
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 607758 as yet unmatched pairs. 39608 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr9:34,256,562
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 605115 as yet unmatched pairs. 36956 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr9:35,722,170
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 604647 as yet unmatched pairs. 36471 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr9:71,709,369
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 602300 as yet unmatched pairs. 34080 records in RAM.
INFO 2026-06-08 09:03:56 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr9:85,677,507
INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 600333 as yet unmatched pairs. 32084 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr9:93,335,511
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 598709 as yet unmatched pairs. 30439 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr9:98,997,005
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 597618 as yet unmatched pairs. 29327 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr9:105,522,226
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 595226 as yet unmatched pairs. 26924 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr9:113,169,240
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 593854 as yet unmatched pairs. 25538 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr9:115,086,320
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 592757 as yet unmatched pairs. 24435 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr9:122,854,218
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 590455 as yet unmatched pairs. 22111 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr9:127,507,372
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 589337 as yet unmatched pairs. 20957 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr9:128,257,996
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 587144 as yet unmatched pairs. 18750 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr9:128,908,755
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 585755 as yet unmatched pairs. 17337 records in RAM.
INFO 2026-06-08 09:04:12 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr9:130,878,553
INFO 2026-06-08 09:04:12 MarkDuplicates Tracking 585318 as yet unmatched pairs. 16874 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr9:132,400,143
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 581645 as yet unmatched pairs. 13186 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr9:133,071,121
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 585503 as yet unmatched pairs. 17043 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr9:133,255,533
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 579498 as yet unmatched pairs. 11034 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr9:134,750,819
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 587426 as yet unmatched pairs. 18947 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr9:134,812,644
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 579455 as yet unmatched pairs. 10969 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr9:136,430,277
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 573333 as yet unmatched pairs. 4842 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr9:136,979,079
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 572301 as yet unmatched pairs. 3798 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 3s. Last read position: chr9:137,498,141
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 569162 as yet unmatched pairs. 651 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 3s. Last read position: chr10:5,889,083
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 567351 as yet unmatched pairs. 24990 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr10:17,237,248
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 566823 as yet unmatched pairs. 24442 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr10:29,551,215
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 564623 as yet unmatched pairs. 22231 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr10:33,180,114
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 563494 as yet unmatched pairs. 21084 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr10:46,549,842
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 561441 as yet unmatched pairs. 19019 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr10:62,092,217
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 560136 as yet unmatched pairs. 17698 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr10:71,834,389
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 560440 as yet unmatched pairs. 17990 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr10:73,998,357
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 557623 as yet unmatched pairs. 15166 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr10:86,364,053
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 555183 as yet unmatched pairs. 12712 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr10:93,359,839
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 553642 as yet unmatched pairs. 11156 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 2s. Last read position: chr10:98,429,596
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 552591 as yet unmatched pairs. 10091 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr10:102,481,863
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 550751 as yet unmatched pairs. 8225 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr10:110,894,114
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 548679 as yet unmatched pairs. 6140 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr10:116,559,218
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 556414 as yet unmatched pairs. 13874 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr10:120,354,955
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 545261 as yet unmatched pairs. 2712 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr10:128,060,997
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 543975 as yet unmatched pairs. 1412 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 2s. Last read position: chr11:319,839
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 548030 as yet unmatched pairs. 62728 records in RAM.
INFO 2026-06-08 09:05:04 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr11:821,707
INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 539925 as yet unmatched pairs. 54607 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr11:1,017,248
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 543667 as yet unmatched pairs. 58348 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:1,031,854
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 538012 as yet unmatched pairs. 52673 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:1,189,972
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 539334 as yet unmatched pairs. 53985 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:1,241,810
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 534929 as yet unmatched pairs. 49571 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,193
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 535785 as yet unmatched pairs. 50423 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,040
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 533420 as yet unmatched pairs. 48058 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,213
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 533423 as yet unmatched pairs. 48061 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,457
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 531530 as yet unmatched pairs. 46168 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 2s. Last read position: chr11:1,761,321
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 535931 as yet unmatched pairs. 50549 records in RAM.
INFO 2026-06-08 09:05:22 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 2s. Last read position: chr11:6,218,095
INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 527437 as yet unmatched pairs. 42035 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:9,573,971
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 525652 as yet unmatched pairs. 40233 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:14,260,662
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 524743 as yet unmatched pairs. 39322 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr11:33,339,367
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 522968 as yet unmatched pairs. 37533 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 2s. Last read position: chr11:45,847,581
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 521268 as yet unmatched pairs. 35825 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr11:47,618,779
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 518998 as yet unmatched pairs. 33551 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:57,808,244
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 517826 as yet unmatched pairs. 32370 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr11:61,865,635
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 515627 as yet unmatched pairs. 30163 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:62,526,784
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 515772 as yet unmatched pairs. 30307 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:62,628,894
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 513171 as yet unmatched pairs. 27698 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:64,267,440
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 510944 as yet unmatched pairs. 25463 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:65,188,597
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 509201 as yet unmatched pairs. 23713 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 2s. Last read position: chr11:65,636,841
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 507275 as yet unmatched pairs. 21755 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr11:66,268,645
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 505178 as yet unmatched pairs. 19643 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:67,365,617
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 503719 as yet unmatched pairs. 18176 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr11:69,081,444
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 501396 as yet unmatched pairs. 15846 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:72,014,365
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 500116 as yet unmatched pairs. 14560 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:75,165,848
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 497858 as yet unmatched pairs. 12295 records in RAM.
INFO 2026-06-08 09:05:55 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr11:83,210,342
INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 495847 as yet unmatched pairs. 10279 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 2s. Last read position: chr11:100,941,784
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 494228 as yet unmatched pairs. 8651 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr11:108,335,837
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 492694 as yet unmatched pairs. 7117 records in RAM.
INFO 2026-06-08 09:06:00 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr11:118,103,140
INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 491355 as yet unmatched pairs. 5767 records in RAM.
INFO 2026-06-08 09:06:02 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr11:119,018,930
INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 489686 as yet unmatched pairs. 4095 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr11:123,061,215
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 488335 as yet unmatched pairs. 2726 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr11:130,914,595
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 486509 as yet unmatched pairs. 887 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:4,654,140
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 484751 as yet unmatched pairs. 41298 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:6,587,388
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 482720 as yet unmatched pairs. 39263 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr12:6,978,342
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 481243 as yet unmatched pairs. 37784 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:8,933,016
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 479417 as yet unmatched pairs. 35947 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:12,717,967
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 478182 as yet unmatched pairs. 34705 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:21,501,864
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 476719 as yet unmatched pairs. 33233 records in RAM.
INFO 2026-06-08 09:06:18 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:32,878,407
INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 475059 as yet unmatched pairs. 31572 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:48,922,009
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 473169 as yet unmatched pairs. 29671 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:49,622,194
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 471662 as yet unmatched pairs. 28161 records in RAM.
INFO 2026-06-08 09:06:22 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,614
INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 478326 as yet unmatched pairs. 34812 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:52,901,868
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 469003 as yet unmatched pairs. 25485 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:53,723,731
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 467389 as yet unmatched pairs. 23869 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:56,101,759
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 465295 as yet unmatched pairs. 21770 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr12:56,712,841
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 464296 as yet unmatched pairs. 20761 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr12:57,156,909
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 463751 as yet unmatched pairs. 20214 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:57,206,629
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 460783 as yet unmatched pairs. 17245 records in RAM.
INFO 2026-06-08 09:06:35 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:62,532,539
INFO 2026-06-08 09:06:35 MarkDuplicates Tracking 458790 as yet unmatched pairs. 15252 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,665
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 458355 as yet unmatched pairs. 14793 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr12:91,157,115
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 458179 as yet unmatched pairs. 14615 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr12:103,930,469
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 455228 as yet unmatched pairs. 11654 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr12:109,469,559
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 452892 as yet unmatched pairs. 9306 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr12:112,944,506
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 451319 as yet unmatched pairs. 7726 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr12:120,219,392
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 450088 as yet unmatched pairs. 6468 records in RAM.
INFO 2026-06-08 09:06:48 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:122,856,057
INFO 2026-06-08 09:06:48 MarkDuplicates Tracking 447634 as yet unmatched pairs. 4002 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr12:124,495,154
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 446013 as yet unmatched pairs. 2368 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:132,816,795
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 444717 as yet unmatched pairs. 1048 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr13:26,219,537
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 442458 as yet unmatched pairs. 11421 records in RAM.
INFO 2026-06-08 09:06:55 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 2s. Last read position: chr13:39,600,834
INFO 2026-06-08 09:06:55 MarkDuplicates Tracking 441230 as yet unmatched pairs. 10192 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr13:49,012,234
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 439683 as yet unmatched pairs. 8626 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr13:94,306,028
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 437899 as yet unmatched pairs. 6828 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr13:110,152,333
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 437293 as yet unmatched pairs. 6209 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr13:110,308,091
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 437647 as yet unmatched pairs. 6551 records in RAM.
INFO 2026-06-08 09:07:04 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr13:110,893,188
INFO 2026-06-08 09:07:04 MarkDuplicates Tracking 432752 as yet unmatched pairs. 1650 records in RAM.
INFO 2026-06-08 09:07:06 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr14:20,801,574
INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 432150 as yet unmatched pairs. 35268 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 2s. Last read position: chr14:22,843,819
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 431217 as yet unmatched pairs. 34326 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 2s. Last read position: chr14:23,955,118
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 427346 as yet unmatched pairs. 30451 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:24,437,207
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 425788 as yet unmatched pairs. 28893 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr14:38,255,727
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 424054 as yet unmatched pairs. 27149 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr14:52,019,092
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 422937 as yet unmatched pairs. 25932 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr14:60,114,573
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 421185 as yet unmatched pairs. 24171 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 2s. Last read position: chr14:64,727,576
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 420144 as yet unmatched pairs. 23122 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr14:68,921,036
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 420989 as yet unmatched pairs. 23961 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr14:73,658,940
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 416220 as yet unmatched pairs. 19178 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr14:74,798,531
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 414574 as yet unmatched pairs. 17528 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr14:80,202,705
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 412965 as yet unmatched pairs. 15914 records in RAM.
INFO 2026-06-08 09:07:30 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr14:94,061,031
INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 411468 as yet unmatched pairs. 14413 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr14:99,516,249
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 409816 as yet unmatched pairs. 12740 records in RAM.
INFO 2026-06-08 09:07:33 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr14:102,086,036
INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 409469 as yet unmatched pairs. 12386 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr14:104,701,423
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 408130 as yet unmatched pairs. 11028 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr14:104,938,039
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 405373 as yet unmatched pairs. 8268 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr14:104,945,594
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 406875 as yet unmatched pairs. 9769 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr14:104,950,741
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 405458 as yet unmatched pairs. 8347 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr14:105,479,467
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 399855 as yet unmatched pairs. 2736 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,184
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 399242 as yet unmatched pairs. 2122 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr15:28,248,584
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 396416 as yet unmatched pairs. 31673 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr15:32,731,773
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 399324 as yet unmatched pairs. 34578 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr15:34,857,074
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 393647 as yet unmatched pairs. 28890 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr15:39,593,051
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 397297 as yet unmatched pairs. 32533 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr15:41,287,594
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 390146 as yet unmatched pairs. 25372 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr15:43,413,221
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 389092 as yet unmatched pairs. 24307 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr15:44,584,485
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 387295 as yet unmatched pairs. 22502 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr15:48,537,737
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 386498 as yet unmatched pairs. 21694 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr15:57,063,791
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 385850 as yet unmatched pairs. 21038 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr15:60,364,518
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 385843 as yet unmatched pairs. 21029 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr15:64,156,775
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 382570 as yet unmatched pairs. 17754 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr15:68,328,204
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 379737 as yet unmatched pairs. 14913 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr15:72,261,676
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 377701 as yet unmatched pairs. 12870 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr15:74,033,206
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 380806 as yet unmatched pairs. 15968 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr15:74,842,374
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 373794 as yet unmatched pairs. 8943 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr15:77,181,687
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 371933 as yet unmatched pairs. 7071 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr15:83,010,253
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 370261 as yet unmatched pairs. 5396 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr15:88,899,367
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 370334 as yet unmatched pairs. 5464 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 2s. Last read position: chr15:90,483,542
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 367827 as yet unmatched pairs. 2952 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr15:100,892,967
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 365600 as yet unmatched pairs. 720 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr16:580,180
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 363717 as yet unmatched pairs. 50976 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:1,494,339
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 361820 as yet unmatched pairs. 49068 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:2,091,869
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 359869 as yet unmatched pairs. 47109 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,291
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 358648 as yet unmatched pairs. 45881 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:3,021,567
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 359155 as yet unmatched pairs. 46388 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr16:4,382,363
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 355049 as yet unmatched pairs. 42273 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr16:10,907,519
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 352444 as yet unmatched pairs. 39665 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:14,919,389
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 351245 as yet unmatched pairs. 38453 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:16,044,661
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 349779 as yet unmatched pairs. 36986 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:16,393,625
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 349573 as yet unmatched pairs. 36777 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:18,515,910
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 348282 as yet unmatched pairs. 35485 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:20,322,965
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 352678 as yet unmatched pairs. 39877 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,397
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 346963 as yet unmatched pairs. 34154 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 2s. Last read position: chr16:22,532,251
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 345155 as yet unmatched pairs. 32346 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:27,363,727
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 344560 as yet unmatched pairs. 31751 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:28,845,359
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 342781 as yet unmatched pairs. 29972 records in RAM.
INFO 2026-06-08 09:08:48 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr16:29,548,734
INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 342011 as yet unmatched pairs. 29202 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:30,069,847
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 343334 as yet unmatched pairs. 30521 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr16:30,555,200
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 338862 as yet unmatched pairs. 26049 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:31,131,995
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 337519 as yet unmatched pairs. 24696 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:47,162,612
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 335394 as yet unmatched pairs. 22569 records in RAM.
INFO 2026-06-08 09:08:56 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr16:55,485,303
INFO 2026-06-08 09:08:56 MarkDuplicates Tracking 335178 as yet unmatched pairs. 22340 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:57,475,553
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 331911 as yet unmatched pairs. 19073 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr16:66,623,443
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 330048 as yet unmatched pairs. 17203 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:67,880,145
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 328230 as yet unmatched pairs. 15372 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:69,691,887
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 326433 as yet unmatched pairs. 13567 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:71,920,801
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 325250 as yet unmatched pairs. 12374 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:75,205,382
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 338450 as yet unmatched pairs. 25566 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr16:75,223,038
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 323516 as yet unmatched pairs. 10631 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr16:75,660,251
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 320203 as yet unmatched pairs. 7310 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr16:85,666,104
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 318506 as yet unmatched pairs. 5606 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr16:88,630,408
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 316836 as yet unmatched pairs. 3932 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:89,291,024
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 315284 as yet unmatched pairs. 2371 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 2s. Last read position: chr17:791,816
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 312865 as yet unmatched pairs. 142825 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:1,775,075
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 311792 as yet unmatched pairs. 141745 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:4,715,331
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 309263 as yet unmatched pairs. 139211 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr17:7,223,849
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 308059 as yet unmatched pairs. 137997 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr17:7,577,573
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 306700 as yet unmatched pairs. 136635 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr17:8,267,167
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 304138 as yet unmatched pairs. 134069 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,140
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 304331 as yet unmatched pairs. 134259 records in RAM.
INFO 2026-06-08 09:09:29 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:17,796,448
INFO 2026-06-08 09:09:29 MarkDuplicates Tracking 301153 as yet unmatched pairs. 131081 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr17:19,379,018
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 298996 as yet unmatched pairs. 128920 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 2s. Last read position: chr17:28,623,922
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 297859 as yet unmatched pairs. 127775 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr17:29,793,894
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 295809 as yet unmatched pairs. 125719 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr17:35,259,589
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 295099 as yet unmatched pairs. 125004 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr17:37,225,042
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 292719 as yet unmatched pairs. 122620 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 2s. Last read position: chr17:38,771,170
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 291531 as yet unmatched pairs. 121426 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 2s. Last read position: chr17:39,716,531
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 296550 as yet unmatched pairs. 126444 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr17:40,355,265
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 289028 as yet unmatched pairs. 118920 records in RAM.
INFO 2026-06-08 09:09:46 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr17:41,527,873
INFO 2026-06-08 09:09:46 MarkDuplicates Tracking 293356 as yet unmatched pairs. 123243 records in RAM.
INFO 2026-06-08 09:09:48 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr17:41,624,228
INFO 2026-06-08 09:09:48 MarkDuplicates Tracking 293193 as yet unmatched pairs. 123079 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr17:42,192,280
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 282494 as yet unmatched pairs. 112380 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 1s. Last read position: chr17:43,018,692
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 281552 as yet unmatched pairs. 111438 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 2s. Last read position: chr17:44,352,018
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 279899 as yet unmatched pairs. 109783 records in RAM.
INFO 2026-06-08 09:09:55 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr17:46,513,511
INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 276876 as yet unmatched pairs. 106760 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 1s. Last read position: chr17:48,852,956
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 275500 as yet unmatched pairs. 105381 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,434
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 278122 as yet unmatched pairs. 108000 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,949
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 303711 as yet unmatched pairs. 133589 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,757
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 296436 as yet unmatched pairs. 126312 records in RAM.
INFO 2026-06-08 09:10:04 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,033
INFO 2026-06-08 09:10:04 MarkDuplicates Tracking 394130 as yet unmatched pairs. 224004 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,488
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 432027 as yet unmatched pairs. 261901 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,930
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 408809 as yet unmatched pairs. 238682 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,096
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 485663 as yet unmatched pairs. 315535 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,561
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 400056 as yet unmatched pairs. 229928 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,765
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 392839 as yet unmatched pairs. 222711 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,941
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 398873 as yet unmatched pairs. 228743 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,230
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 362076 as yet unmatched pairs. 191940 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,435
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 389507 as yet unmatched pairs. 219362 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,522
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 443217 as yet unmatched pairs. 273063 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,864
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 438552 as yet unmatched pairs. 268397 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,040
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 448820 as yet unmatched pairs. 278664 records in RAM.
INFO 2026-06-08 09:12:37 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 133s. Last read position: chr17:50,190,333
INFO 2026-06-08 09:12:37 MarkDuplicates Tracking 488731 as yet unmatched pairs. 318575 records in RAM.
INFO 2026-06-08 09:12:39 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,823
INFO 2026-06-08 09:12:39 MarkDuplicates Tracking 302122 as yet unmatched pairs. 131963 records in RAM.
INFO 2026-06-08 09:12:41 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,382
INFO 2026-06-08 09:12:41 MarkDuplicates Tracking 398675 as yet unmatched pairs. 228509 records in RAM.
INFO 2026-06-08 09:12:43 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,800
INFO 2026-06-08 09:12:43 MarkDuplicates Tracking 378307 as yet unmatched pairs. 208133 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr17:50,191,873
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 443502 as yet unmatched pairs. 273322 records in RAM.
INFO 2026-06-08 09:12:47 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,513
INFO 2026-06-08 09:12:47 MarkDuplicates Tracking 401335 as yet unmatched pairs. 231155 records in RAM.
INFO 2026-06-08 09:12:49 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,679
INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 455830 as yet unmatched pairs. 285648 records in RAM.
INFO 2026-06-08 09:12:51 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,000
INFO 2026-06-08 09:12:51 MarkDuplicates Tracking 411311 as yet unmatched pairs. 241129 records in RAM.
INFO 2026-06-08 09:12:53 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,961
INFO 2026-06-08 09:12:53 MarkDuplicates Tracking 423055 as yet unmatched pairs. 252873 records in RAM.
INFO 2026-06-08 09:12:55 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,025
INFO 2026-06-08 09:12:55 MarkDuplicates Tracking 462610 as yet unmatched pairs. 292417 records in RAM.
INFO 2026-06-08 09:12:57 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,348
INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 418184 as yet unmatched pairs. 247991 records in RAM.
INFO 2026-06-08 09:12:58 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,422
INFO 2026-06-08 09:12:58 MarkDuplicates Tracking 403136 as yet unmatched pairs. 232941 records in RAM.
INFO 2026-06-08 09:13:00 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,726
INFO 2026-06-08 09:13:00 MarkDuplicates Tracking 366973 as yet unmatched pairs. 196778 records in RAM.
INFO 2026-06-08 09:13:02 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,816
INFO 2026-06-08 09:13:02 MarkDuplicates Tracking 396472 as yet unmatched pairs. 226267 records in RAM.
INFO 2026-06-08 09:13:04 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,264
INFO 2026-06-08 09:13:04 MarkDuplicates Tracking 416530 as yet unmatched pairs. 246321 records in RAM.
INFO 2026-06-08 09:13:06 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,469
INFO 2026-06-08 09:13:06 MarkDuplicates Tracking 365271 as yet unmatched pairs. 195061 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,614
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 446358 as yet unmatched pairs. 276147 records in RAM.
INFO 2026-06-08 09:13:09 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,967
INFO 2026-06-08 09:13:09 MarkDuplicates Tracking 386698 as yet unmatched pairs. 216486 records in RAM.
INFO 2026-06-08 09:13:11 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,185
INFO 2026-06-08 09:13:11 MarkDuplicates Tracking 405852 as yet unmatched pairs. 235639 records in RAM.
INFO 2026-06-08 09:13:13 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,494
INFO 2026-06-08 09:13:13 MarkDuplicates Tracking 355804 as yet unmatched pairs. 185591 records in RAM.
INFO 2026-06-08 09:13:15 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,648
INFO 2026-06-08 09:13:15 MarkDuplicates Tracking 419241 as yet unmatched pairs. 249028 records in RAM.
INFO 2026-06-08 09:13:17 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,187
INFO 2026-06-08 09:13:17 MarkDuplicates Tracking 425381 as yet unmatched pairs. 255166 records in RAM.
INFO 2026-06-08 09:13:19 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,750
INFO 2026-06-08 09:13:19 MarkDuplicates Tracking 379497 as yet unmatched pairs. 209280 records in RAM.
INFO 2026-06-08 09:13:21 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,178
INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 306909 as yet unmatched pairs. 136691 records in RAM.
INFO 2026-06-08 09:13:23 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,226
INFO 2026-06-08 09:13:23 MarkDuplicates Tracking 312405 as yet unmatched pairs. 142182 records in RAM.
INFO 2026-06-08 09:13:26 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 3s. Last read position: chr17:50,199,310
INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 284552 as yet unmatched pairs. 114328 records in RAM.
INFO 2026-06-08 09:13:28 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,790
INFO 2026-06-08 09:13:28 MarkDuplicates Tracking 242268 as yet unmatched pairs. 72037 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,397,230
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 198779 as yet unmatched pairs. 28548 records in RAM.
INFO 2026-06-08 09:13:31 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr17:58,006,432
INFO 2026-06-08 09:13:31 MarkDuplicates Tracking 196265 as yet unmatched pairs. 26034 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 2s. Last read position: chr17:59,682,639
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 197440 as yet unmatched pairs. 27209 records in RAM.
INFO 2026-06-08 09:13:35 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr17:62,681,099
INFO 2026-06-08 09:13:35 MarkDuplicates Tracking 194166 as yet unmatched pairs. 23933 records in RAM.
INFO 2026-06-08 09:13:36 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr17:64,547,721
INFO 2026-06-08 09:13:36 MarkDuplicates Tracking 191213 as yet unmatched pairs. 20980 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr17:68,528,871
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 191647 as yet unmatched pairs. 21407 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr17:75,241,609
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 187838 as yet unmatched pairs. 17586 records in RAM.
INFO 2026-06-08 09:13:41 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr17:75,732,215
INFO 2026-06-08 09:13:41 MarkDuplicates Tracking 188616 as yet unmatched pairs. 18364 records in RAM.
INFO 2026-06-08 09:13:43 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr17:75,874,472
INFO 2026-06-08 09:13:43 MarkDuplicates Tracking 184449 as yet unmatched pairs. 14195 records in RAM.
INFO 2026-06-08 09:13:45 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr17:76,688,156
INFO 2026-06-08 09:13:45 MarkDuplicates Tracking 182293 as yet unmatched pairs. 12037 records in RAM.
INFO 2026-06-08 09:13:47 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr17:78,680,322
INFO 2026-06-08 09:13:47 MarkDuplicates Tracking 180348 as yet unmatched pairs. 10085 records in RAM.
INFO 2026-06-08 09:13:49 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr17:80,138,272
INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 178461 as yet unmatched pairs. 8183 records in RAM.
INFO 2026-06-08 09:13:51 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr17:80,964,233
INFO 2026-06-08 09:13:51 MarkDuplicates Tracking 176350 as yet unmatched pairs. 6072 records in RAM.
INFO 2026-06-08 09:13:53 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr17:81,693,552
INFO 2026-06-08 09:13:53 MarkDuplicates Tracking 175023 as yet unmatched pairs. 4737 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr17:82,056,860
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 172901 as yet unmatched pairs. 2608 records in RAM.
INFO 2026-06-08 09:13:56 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr17:83,085,016
INFO 2026-06-08 09:13:56 MarkDuplicates Tracking 171440 as yet unmatched pairs. 1144 records in RAM.
INFO 2026-06-08 09:13:58 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr18:9,517,086
INFO 2026-06-08 09:13:58 MarkDuplicates Tracking 168982 as yet unmatched pairs. 7464 records in RAM.
INFO 2026-06-08 09:14:00 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr18:21,741,640
INFO 2026-06-08 09:14:00 MarkDuplicates Tracking 167388 as yet unmatched pairs. 5866 records in RAM.
INFO 2026-06-08 09:14:02 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr18:31,546,544
INFO 2026-06-08 09:14:02 MarkDuplicates Tracking 166330 as yet unmatched pairs. 4807 records in RAM.
INFO 2026-06-08 09:14:03 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr18:54,274,077
INFO 2026-06-08 09:14:03 MarkDuplicates Tracking 163930 as yet unmatched pairs. 2403 records in RAM.
INFO 2026-06-08 09:14:04 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr18:75,287,080
INFO 2026-06-08 09:14:04 MarkDuplicates Tracking 162374 as yet unmatched pairs. 843 records in RAM.
INFO 2026-06-08 09:14:07 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 2s. Last read position: chr19:876,996
INFO 2026-06-08 09:14:07 MarkDuplicates Tracking 160502 as yet unmatched pairs. 68997 records in RAM.
INFO 2026-06-08 09:14:09 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:1,254,978
INFO 2026-06-08 09:14:09 MarkDuplicates Tracking 159858 as yet unmatched pairs. 68353 records in RAM.
INFO 2026-06-08 09:14:11 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:2,127,199
INFO 2026-06-08 09:14:11 MarkDuplicates Tracking 156448 as yet unmatched pairs. 64943 records in RAM.
INFO 2026-06-08 09:14:13 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr19:3,746,773
INFO 2026-06-08 09:14:13 MarkDuplicates Tracking 154004 as yet unmatched pairs. 62492 records in RAM.
INFO 2026-06-08 09:14:15 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 2s. Last read position: chr19:5,590,204
INFO 2026-06-08 09:14:15 MarkDuplicates Tracking 152334 as yet unmatched pairs. 60817 records in RAM.
INFO 2026-06-08 09:14:18 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 2s. Last read position: chr19:6,714,028
INFO 2026-06-08 09:14:18 MarkDuplicates Tracking 151381 as yet unmatched pairs. 59864 records in RAM.
INFO 2026-06-08 09:14:20 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 2s. Last read position: chr19:8,466,363
INFO 2026-06-08 09:14:20 MarkDuplicates Tracking 148896 as yet unmatched pairs. 57378 records in RAM.
INFO 2026-06-08 09:14:22 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr19:8,964,830
INFO 2026-06-08 09:14:22 MarkDuplicates Tracking 147292 as yet unmatched pairs. 55769 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr19:10,467,574
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 145145 as yet unmatched pairs. 53618 records in RAM.
INFO 2026-06-08 09:14:26 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr19:11,242,058
INFO 2026-06-08 09:14:26 MarkDuplicates Tracking 143277 as yet unmatched pairs. 51750 records in RAM.
INFO 2026-06-08 09:14:27 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr19:12,796,891
INFO 2026-06-08 09:14:27 MarkDuplicates Tracking 141429 as yet unmatched pairs. 49902 records in RAM.
INFO 2026-06-08 09:14:29 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr19:14,151,468
INFO 2026-06-08 09:14:29 MarkDuplicates Tracking 139492 as yet unmatched pairs. 47965 records in RAM.
INFO 2026-06-08 09:14:31 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr19:15,187,137
INFO 2026-06-08 09:14:31 MarkDuplicates Tracking 138790 as yet unmatched pairs. 47262 records in RAM.
INFO 2026-06-08 09:14:33 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr19:16,089,078
INFO 2026-06-08 09:14:33 MarkDuplicates Tracking 139506 as yet unmatched pairs. 47976 records in RAM.
INFO 2026-06-08 09:14:34 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr19:17,404,158
INFO 2026-06-08 09:14:34 MarkDuplicates Tracking 133882 as yet unmatched pairs. 42351 records in RAM.
INFO 2026-06-08 09:14:36 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr19:18,574,882
INFO 2026-06-08 09:14:36 MarkDuplicates Tracking 132219 as yet unmatched pairs. 40683 records in RAM.
INFO 2026-06-08 09:14:38 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr19:19,668,883
INFO 2026-06-08 09:14:38 MarkDuplicates Tracking 129472 as yet unmatched pairs. 37936 records in RAM.
INFO 2026-06-08 09:14:39 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr19:35,122,785
INFO 2026-06-08 09:14:39 MarkDuplicates Tracking 129519 as yet unmatched pairs. 37977 records in RAM.
INFO 2026-06-08 09:14:41 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr19:36,114,339
INFO 2026-06-08 09:14:41 MarkDuplicates Tracking 125762 as yet unmatched pairs. 34220 records in RAM.
INFO 2026-06-08 09:14:43 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr19:38,704,937
INFO 2026-06-08 09:14:43 MarkDuplicates Tracking 125584 as yet unmatched pairs. 34041 records in RAM.
INFO 2026-06-08 09:14:45 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 2s. Last read position: chr19:39,406,890
INFO 2026-06-08 09:14:45 MarkDuplicates Tracking 130588 as yet unmatched pairs. 39045 records in RAM.
INFO 2026-06-08 09:14:47 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 2s. Last read position: chr19:39,893,387
INFO 2026-06-08 09:14:47 MarkDuplicates Tracking 121108 as yet unmatched pairs. 29565 records in RAM.
INFO 2026-06-08 09:14:49 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr19:40,667,501
INFO 2026-06-08 09:14:49 MarkDuplicates Tracking 118863 as yet unmatched pairs. 27314 records in RAM.
INFO 2026-06-08 09:14:51 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr19:41,892,079
INFO 2026-06-08 09:14:51 MarkDuplicates Tracking 117497 as yet unmatched pairs. 25948 records in RAM.
INFO 2026-06-08 09:14:53 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr19:42,291,212
INFO 2026-06-08 09:14:53 MarkDuplicates Tracking 116373 as yet unmatched pairs. 24823 records in RAM.
INFO 2026-06-08 09:14:54 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr19:44,176,098
INFO 2026-06-08 09:14:54 MarkDuplicates Tracking 112911 as yet unmatched pairs. 21358 records in RAM.
INFO 2026-06-08 09:14:56 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr19:45,408,437
INFO 2026-06-08 09:14:56 MarkDuplicates Tracking 110925 as yet unmatched pairs. 19372 records in RAM.
INFO 2026-06-08 09:14:58 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr19:45,961,119
INFO 2026-06-08 09:14:58 MarkDuplicates Tracking 108643 as yet unmatched pairs. 17090 records in RAM.
INFO 2026-06-08 09:14:59 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr19:47,750,975
INFO 2026-06-08 09:14:59 MarkDuplicates Tracking 107051 as yet unmatched pairs. 15498 records in RAM.
INFO 2026-06-08 09:15:01 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chr19:48,969,273
INFO 2026-06-08 09:15:01 MarkDuplicates Tracking 105039 as yet unmatched pairs. 13481 records in RAM.
INFO 2026-06-08 09:15:03 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr19:49,614,972
INFO 2026-06-08 09:15:03 MarkDuplicates Tracking 102972 as yet unmatched pairs. 11413 records in RAM.
INFO 2026-06-08 09:15:04 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr19:50,247,100
INFO 2026-06-08 09:15:04 MarkDuplicates Tracking 102216 as yet unmatched pairs. 10653 records in RAM.
INFO 2026-06-08 09:15:08 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 3s. Last read position: chr19:52,190,120
INFO 2026-06-08 09:15:08 MarkDuplicates Tracking 100695 as yet unmatched pairs. 9131 records in RAM.
INFO 2026-06-08 09:15:10 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr19:54,207,467
INFO 2026-06-08 09:15:10 MarkDuplicates Tracking 98270 as yet unmatched pairs. 6706 records in RAM.
INFO 2026-06-08 09:15:11 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chr19:55,346,564
INFO 2026-06-08 09:15:11 MarkDuplicates Tracking 95691 as yet unmatched pairs. 4126 records in RAM.
INFO 2026-06-08 09:15:13 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr19:57,291,833
INFO 2026-06-08 09:15:13 MarkDuplicates Tracking 93833 as yet unmatched pairs. 2266 records in RAM.
INFO 2026-06-08 09:15:15 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr20:297,808
INFO 2026-06-08 09:15:15 MarkDuplicates Tracking 91602 as yet unmatched pairs. 24944 records in RAM.
INFO 2026-06-08 09:15:17 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr20:3,866,146
INFO 2026-06-08 09:15:17 MarkDuplicates Tracking 89811 as yet unmatched pairs. 23153 records in RAM.
INFO 2026-06-08 09:15:18 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr20:17,660,125
INFO 2026-06-08 09:15:18 MarkDuplicates Tracking 89742 as yet unmatched pairs. 23084 records in RAM.
INFO 2026-06-08 09:15:21 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 2s. Last read position: chr20:31,538,193
INFO 2026-06-08 09:15:21 MarkDuplicates Tracking 87116 as yet unmatched pairs. 20458 records in RAM.
INFO 2026-06-08 09:15:22 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr20:34,851,283
INFO 2026-06-08 09:15:22 MarkDuplicates Tracking 84593 as yet unmatched pairs. 17928 records in RAM.
INFO 2026-06-08 09:15:24 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr20:36,606,025
INFO 2026-06-08 09:15:24 MarkDuplicates Tracking 83273 as yet unmatched pairs. 16607 records in RAM.
INFO 2026-06-08 09:15:26 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr20:38,155,991
INFO 2026-06-08 09:15:26 MarkDuplicates Tracking 86292 as yet unmatched pairs. 19625 records in RAM.
INFO 2026-06-08 09:15:27 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chr20:45,316,585
INFO 2026-06-08 09:15:27 MarkDuplicates Tracking 79737 as yet unmatched pairs. 13067 records in RAM.
INFO 2026-06-08 09:15:29 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr20:45,945,713
INFO 2026-06-08 09:15:29 MarkDuplicates Tracking 77938 as yet unmatched pairs. 11264 records in RAM.
INFO 2026-06-08 09:15:31 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chr20:49,864,783
INFO 2026-06-08 09:15:31 MarkDuplicates Tracking 76363 as yet unmatched pairs. 9685 records in RAM.
INFO 2026-06-08 09:15:33 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 2s. Last read position: chr20:57,407,634
INFO 2026-06-08 09:15:33 MarkDuplicates Tracking 74589 as yet unmatched pairs. 7911 records in RAM.
INFO 2026-06-08 09:15:35 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chr20:62,306,656
INFO 2026-06-08 09:15:35 MarkDuplicates Tracking 73386 as yet unmatched pairs. 6706 records in RAM.
INFO 2026-06-08 09:15:36 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chr20:62,830,541
INFO 2026-06-08 09:15:36 MarkDuplicates Tracking 70381 as yet unmatched pairs. 3699 records in RAM.
INFO 2026-06-08 09:15:38 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: chr20:63,696,850
INFO 2026-06-08 09:15:38 MarkDuplicates Tracking 70663 as yet unmatched pairs. 3981 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chr21:6,119,130
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 66533 as yet unmatched pairs. 14990 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chr21:8,415,557
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 65560 as yet unmatched pairs. 14011 records in RAM.
INFO 2026-06-08 09:15:42 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chr21:26,844,307
INFO 2026-06-08 09:15:42 MarkDuplicates Tracking 64350 as yet unmatched pairs. 12796 records in RAM.
INFO 2026-06-08 09:15:43 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chr21:33,559,762
INFO 2026-06-08 09:15:43 MarkDuplicates Tracking 63004 as yet unmatched pairs. 11447 records in RAM.
INFO 2026-06-08 09:15:45 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 1s. Last read position: chr21:38,819,506
INFO 2026-06-08 09:15:45 MarkDuplicates Tracking 63509 as yet unmatched pairs. 11946 records in RAM.
INFO 2026-06-08 09:15:47 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 2s. Last read position: chr21:43,419,945
INFO 2026-06-08 09:15:47 MarkDuplicates Tracking 59759 as yet unmatched pairs. 8196 records in RAM.
INFO 2026-06-08 09:15:49 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chr21:45,405,162
INFO 2026-06-08 09:15:49 MarkDuplicates Tracking 57274 as yet unmatched pairs. 5711 records in RAM.
INFO 2026-06-08 09:15:51 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chr21:45,990,825
INFO 2026-06-08 09:15:51 MarkDuplicates Tracking 57508 as yet unmatched pairs. 5944 records in RAM.
INFO 2026-06-08 09:15:52 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 1s. Last read position: chr21:46,121,580
INFO 2026-06-08 09:15:52 MarkDuplicates Tracking 59228 as yet unmatched pairs. 7664 records in RAM.
INFO 2026-06-08 09:15:54 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: chr22:18,906,356
INFO 2026-06-08 09:15:54 MarkDuplicates Tracking 51226 as yet unmatched pairs. 23730 records in RAM.
INFO 2026-06-08 09:15:56 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 1s. Last read position: chr22:21,933,454
INFO 2026-06-08 09:15:56 MarkDuplicates Tracking 49650 as yet unmatched pairs. 22154 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 2s. Last read position: chr22:23,781,047
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 52303 as yet unmatched pairs. 24807 records in RAM.
INFO 2026-06-08 09:16:00 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 1s. Last read position: chr22:25,711,083
INFO 2026-06-08 09:16:00 MarkDuplicates Tracking 44696 as yet unmatched pairs. 17200 records in RAM.
INFO 2026-06-08 09:16:02 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: chr22:29,808,113
INFO 2026-06-08 09:16:02 MarkDuplicates Tracking 43069 as yet unmatched pairs. 15573 records in RAM.
INFO 2026-06-08 09:16:04 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 1s. Last read position: chr22:32,859,185
INFO 2026-06-08 09:16:04 MarkDuplicates Tracking 44299 as yet unmatched pairs. 16803 records in RAM.
INFO 2026-06-08 09:16:06 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 1s. Last read position: chr22:36,301,536
INFO 2026-06-08 09:16:06 MarkDuplicates Tracking 40426 as yet unmatched pairs. 12930 records in RAM.
INFO 2026-06-08 09:16:07 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 1s. Last read position: chr22:37,805,598
INFO 2026-06-08 09:16:07 MarkDuplicates Tracking 38052 as yet unmatched pairs. 10556 records in RAM.
INFO 2026-06-08 09:16:09 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 1s. Last read position: chr22:39,417,710
INFO 2026-06-08 09:16:09 MarkDuplicates Tracking 35853 as yet unmatched pairs. 8356 records in RAM.
INFO 2026-06-08 09:16:10 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 1s. Last read position: chr22:42,067,116
INFO 2026-06-08 09:16:10 MarkDuplicates Tracking 34352 as yet unmatched pairs. 6855 records in RAM.
INFO 2026-06-08 09:16:12 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chr22:46,381,941
INFO 2026-06-08 09:16:12 MarkDuplicates Tracking 32483 as yet unmatched pairs. 4986 records in RAM.
INFO 2026-06-08 09:16:14 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 1s. Last read position: chr22:50,284,133
INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 31792 as yet unmatched pairs. 4294 records in RAM.
INFO 2026-06-08 09:16:15 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: chr22:50,604,369
INFO 2026-06-08 09:16:15 MarkDuplicates Tracking 27871 as yet unmatched pairs. 373 records in RAM.
INFO 2026-06-08 09:16:17 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 2s. Last read position: chrX:3,317,599
INFO 2026-06-08 09:16:17 MarkDuplicates Tracking 27380 as yet unmatched pairs. 23528 records in RAM.
INFO 2026-06-08 09:16:19 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 1s. Last read position: chrX:17,731,957
INFO 2026-06-08 09:16:19 MarkDuplicates Tracking 24491 as yet unmatched pairs. 20639 records in RAM.
INFO 2026-06-08 09:16:20 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 1s. Last read position: chrX:40,581,031
INFO 2026-06-08 09:16:20 MarkDuplicates Tracking 23949 as yet unmatched pairs. 20094 records in RAM.
INFO 2026-06-08 09:16:22 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 1s. Last read position: chrX:47,565,076
INFO 2026-06-08 09:16:22 MarkDuplicates Tracking 21961 as yet unmatched pairs. 18105 records in RAM.
INFO 2026-06-08 09:16:24 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:40s. Time for last 1,000,000: 2s. Last read position: chrX:49,039,105
INFO 2026-06-08 09:16:24 MarkDuplicates Tracking 21451 as yet unmatched pairs. 17595 records in RAM.
INFO 2026-06-08 09:16:26 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 1s. Last read position: chrX:53,549,031
INFO 2026-06-08 09:16:26 MarkDuplicates Tracking 18979 as yet unmatched pairs. 15123 records in RAM.
INFO 2026-06-08 09:16:27 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 1s. Last read position: chrX:66,200,625
INFO 2026-06-08 09:16:27 MarkDuplicates Tracking 16483 as yet unmatched pairs. 12627 records in RAM.
INFO 2026-06-08 09:16:28 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 1s. Last read position: chrX:75,274,225
INFO 2026-06-08 09:16:28 MarkDuplicates Tracking 14937 as yet unmatched pairs. 11081 records in RAM.
INFO 2026-06-08 09:16:30 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:46s. Time for last 1,000,000: 1s. Last read position: chrX:103,216,259
INFO 2026-06-08 09:16:30 MarkDuplicates Tracking 13405 as yet unmatched pairs. 9549 records in RAM.
INFO 2026-06-08 09:16:32 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:48s. Time for last 1,000,000: 1s. Last read position: chrX:119,871,853
INFO 2026-06-08 09:16:32 MarkDuplicates Tracking 11904 as yet unmatched pairs. 8048 records in RAM.
INFO 2026-06-08 09:16:33 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 1s. Last read position: chrX:147,948,686
INFO 2026-06-08 09:16:33 MarkDuplicates Tracking 10895 as yet unmatched pairs. 7039 records in RAM.
INFO 2026-06-08 09:16:35 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 1s. Last read position: chrX:153,951,601
INFO 2026-06-08 09:16:35 MarkDuplicates Tracking 9192 as yet unmatched pairs. 5336 records in RAM.
INFO 2026-06-08 09:16:36 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 1s. Last read position: chrX:154,360,064
INFO 2026-06-08 09:16:36 MarkDuplicates Tracking 7961 as yet unmatched pairs. 4105 records in RAM.
INFO 2026-06-08 09:16:38 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 1s. Last read position: chrX:154,435,385
INFO 2026-06-08 09:16:38 MarkDuplicates Tracking 5441 as yet unmatched pairs. 1585 records in RAM.
INFO 2026-06-08 09:16:39 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:55s. Time for last 1,000,000: 1s. Last read position: chrY:19,741,422
INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 3915 as yet unmatched pairs. 632 records in RAM.
INFO 2026-06-08 09:16:40 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 1s. Last read position: KI270733.1:130,973
INFO 2026-06-08 09:16:40 MarkDuplicates Tracking 1766 as yet unmatched pairs. 1759 records in RAM.
INFO 2026-06-08 09:16:41 MarkDuplicates Read 629712955 records. 0 pairs never matched.
INFO 2026-06-08 09:17:37 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142880; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:17:37 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:17:41 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:17:41 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:17:53 OpticalDuplicateFinder Large duplicate set. size = 1699
INFO 2026-06-08 09:17:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,734
INFO 2026-06-08 09:17:53 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:17:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,825
INFO 2026-06-08 09:17:53 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 09:17:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,778
INFO 2026-06-08 09:17:53 OpticalDuplicateFinder Large duplicate set. size = 1276
INFO 2026-06-08 09:17:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,711
INFO 2026-06-08 09:17:53 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 09:17:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,735
INFO 2026-06-08 09:17:53 OpticalDuplicateFinder Large duplicate set. size = 1100
INFO 2026-06-08 09:17:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,095
INFO 2026-06-08 09:17:54 OpticalDuplicateFinder Large duplicate set. size = 1213
INFO 2026-06-08 09:17:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,919
INFO 2026-06-08 09:17:55 OpticalDuplicateFinder Large duplicate set. size = 1364
INFO 2026-06-08 09:17:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,222
INFO 2026-06-08 09:17:55 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:17:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,423
INFO 2026-06-08 09:17:55 OpticalDuplicateFinder Large duplicate set. size = 1299
INFO 2026-06-08 09:17:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,484
INFO 2026-06-08 09:17:56 OpticalDuplicateFinder Large duplicate set. size = 1654
INFO 2026-06-08 09:17:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,086
INFO 2026-06-08 09:17:56 OpticalDuplicateFinder Large duplicate set. size = 1273
INFO 2026-06-08 09:17:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,153
INFO 2026-06-08 09:17:56 OpticalDuplicateFinder Large duplicate set. size = 1136
INFO 2026-06-08 09:17:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,351
INFO 2026-06-08 09:18:35 OpticalDuplicateFinder Large duplicate set. size = 1950
INFO 2026-06-08 09:18:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,103
INFO 2026-06-08 09:18:35 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 09:18:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,117
INFO 2026-06-08 09:18:35 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 09:18:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,812
INFO 2026-06-08 09:18:35 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:18:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,345
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1448
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,303
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1879
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,608
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1767
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,017
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,901
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,365
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1452
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,820
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 2222
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,631
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,819
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,232
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1257
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,211
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,681
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,446
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,327
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1446
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,719
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1200
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,889
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,377
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,709
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,548
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,498
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,120
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,354
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1263
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,629
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1466
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,594
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1788
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,774
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,634
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 2774
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,287
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,127
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,301
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 2048
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,358
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,168
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1498
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,554
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 3183
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,970
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,455
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,604
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,732
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,365
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1591
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,411
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,977
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1472
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,499
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1339
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,757
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1129
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,086
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,650
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 2029
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,382
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,915
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1290
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,469
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,211
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1377
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,305
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,699
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder Large duplicate set. size = 1119
INFO 2026-06-08 09:18:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,466
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1146
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,860
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1429
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,115
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1388
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,776
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1435
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,979
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1171
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,462
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,343
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1312
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,123
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1679
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,642
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,118
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1140
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,284
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1221
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,106
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1567
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,386
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1179
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,841
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,505
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1079
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,794
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1497
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,860
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,593
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 2049
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,821
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,757
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 2732
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,500
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,206
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 2104
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,002
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,209
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,520
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,793
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,056
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1994
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,328
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,104
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 09:18:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,907
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,621
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,614
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,432
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1367
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,558
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,901
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1713
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,348
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,624
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1906
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,524
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,098
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1216
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,478
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1630
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,205
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,750
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1436
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,661
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1211
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,845
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,859
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 2242
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,399
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,382
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1616
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,628
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1781
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,448
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1283
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,680
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,552
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1315
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,359
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1616
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,882
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1277
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,922
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 2884
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,236
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,954
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,202
INFO 2026-06-08 09:18:41 OpticalDuplicateFinder Large duplicate set. size = 1326
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,632
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1647
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,177
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1708
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,060
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1684
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,785
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 2074
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,184
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,370
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1074
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,316
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,936
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1322
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,642
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,791
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1593
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,440
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,726
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1299
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,031
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1371
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,277
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,618
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1316
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,291
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,729
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1205
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,901
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,296
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,335
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 09:18:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,366
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,527
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,213
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1450
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,720
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1865
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,720
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1120
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,549
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 2175
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,487
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,314
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 2642
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,590
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,742
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,809
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1649
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,248
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1905
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,937
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1318
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,960
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 2744
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,708
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,207
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,262
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,289
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 3672
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,066
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,807
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,967
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1297
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,604
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1169
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,479
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1504
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,499
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1861
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,427
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,557
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 2093
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,149
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,734
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1422
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,556
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,224
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1587
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,804
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,378
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,176
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1342
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,327
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1824
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,149
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1434
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,519
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1286
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,788
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 09:18:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,694
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,021
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1165
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,847
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1573
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,654
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1743
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,157
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1453
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,777
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 2842
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,125
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,273
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 2109
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,613
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,434
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1489
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,193
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 2017
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,983
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,214
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1833
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,987
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,075
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1867
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,840
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1291
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,736
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1355
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,812
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1269
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,101
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1137
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,587
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,684
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 2039
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,082
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,506
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1187
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,469
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,099
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1527
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,555
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1368
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,373
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1297
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,595
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,249
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1214
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,955
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 2482
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,074
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,607
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1520
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,387
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1244
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,424
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1657
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,859
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1518
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,060
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,133
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1399
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,313
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,464
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1290
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,908
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,768
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,393
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,214
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1254
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,350
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,636
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1295
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,604
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1409
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,954
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1093
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,499
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1216
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,975
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,394
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1297
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,130
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,683
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,020
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,660
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1391
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,768
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1433
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,346
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 2097
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,428
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,251
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,057
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1225
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,220
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1210
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,941
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1405
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,119
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder Large duplicate set. size = 1132
INFO 2026-06-08 09:18:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,973
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 2124
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,287
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,965
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,629
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,640
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1244
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,614
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1457
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,576
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1361
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,733
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1600
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,658
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1286
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,096
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1497
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,555
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1058
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,945
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1976
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,620
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 2197
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,136
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,723
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,160
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 2125
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,664
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,635
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 2400
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,126
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,032
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,965
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1250
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,104
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,294
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,775
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,429
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,721
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1153
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,057
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 2069
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,038
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,145
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1299
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,797
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1507
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,950
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1279
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,242
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1835
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,353
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 2072
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,048
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,036
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 2626
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,502
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,890
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1718
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,087
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1550
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,367
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 3215
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,708
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,615
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,689
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1292
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,384
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,606
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,667
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1175
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,343
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1542
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,203
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1797
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,454
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 3953
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,159
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,146
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,562
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1183
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,896
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1762
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,264
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1349
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,019
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1304
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,355
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder Large duplicate set. size = 1220
INFO 2026-06-08 09:18:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,714
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,339
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1404
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,532
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,655
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,055
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1125
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,046
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1136
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,169
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1153
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,076
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,618
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1253
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,322
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1444
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,851
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1424
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,353
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1451
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,019
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1173
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,524
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1245
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,882
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,696
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,252
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,976
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,068
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 09:18:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,817
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,228
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1498
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,739
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1491
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,840
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,208
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1193
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,810
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,906
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1432
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,167
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1220
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,065
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,015
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1299
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,714
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1187
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,603
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,053
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,512
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1277
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,029
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1137
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,314
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1515
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,526
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 2285
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,170
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,797
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,969
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,168
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 2341
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,658
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,449
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,549
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1449
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,686
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 3182
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,608
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,351
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,899
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder Large duplicate set. size = 1498
INFO 2026-06-08 09:18:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,796
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,546
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1493
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,216
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,119
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,188
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1183
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,534
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,354
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1353
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,519
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,411
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,060
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,575
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1365
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,479
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,841
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 2022
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,378
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,184
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1236
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,033
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1252
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,805
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1192
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,163
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 2369
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,522
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,523
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1406
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,725
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1419
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,493
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,962
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1725
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,590
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 2286
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,992
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,923
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 2549
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,808
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,124
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1195
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,229
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 2789
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,648
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,625
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 4283
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,253
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,332
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,576
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,290
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,592
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 2531
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,845
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,164
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,345
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 2635
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,012
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,501
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,461
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,911
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,805
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1772
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,667
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,046
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,662
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,346
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,432
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1174
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,331
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1754
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,989
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,059
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1240
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,525
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1850
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,839
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1110
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,483
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,334
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1384
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,671
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,950
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,605
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 1149
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,697
INFO 2026-06-08 09:18:48 OpticalDuplicateFinder Large duplicate set. size = 2501
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,389
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,640
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 4286
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,767
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,180
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,234
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,021
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1331
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,314
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1737
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,842
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,697
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 2051
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,633
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,830
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 2719
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,485
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,145
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,752
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1412
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,998
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 2681
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,834
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,275
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,383
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1373
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,856
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,507
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1215
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,655
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,255
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1787
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,372
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,657
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,300
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1586
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,593
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 2019
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,301
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,599
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1194
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,131
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1430
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,689
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1268
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,952
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1613
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,391
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,631
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1298
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,629
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 2671
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,824
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,946
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1263
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,621
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1489
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,433
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1414
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,304
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1176
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,179
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,277
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1310
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,425
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder Large duplicate set. size = 1208
INFO 2026-06-08 09:18:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,014
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1815
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,180
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,137
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1130
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,601
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1309
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,823
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1732
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,710
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1521
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,811
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,804
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 2213
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,820
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,041
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1776
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,927
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,114
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1119
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,998
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,557
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1356
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,185
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1261
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,552
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 2487
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,379
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,548
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,078
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder Large duplicate set. size = 1272
INFO 2026-06-08 09:18:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,692
INFO 2026-06-08 09:18:51 OpticalDuplicateFinder Large duplicate set. size = 1192
INFO 2026-06-08 09:18:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,778
INFO 2026-06-08 09:19:19 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:19:19 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:20:24 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:20:27 MarkDuplicates After generateDuplicateIndexes freeMemory: 203819936; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:20:27 MarkDuplicates Marking 315532180 records as duplicates.
INFO 2026-06-08 09:20:27 MarkDuplicates Found 21697855 optical duplicate clusters.
INFO 2026-06-08 09:20:27 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:20:45 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:19,342,782
INFO 2026-06-08 09:21:02 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:35s. Time for last 10,000,000: 17s. Last read position: chr1:35,851,017
INFO 2026-06-08 09:21:20 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:52s. Time for last 10,000,000: 17s. Last read position: chr1:102,965,489
INFO 2026-06-08 09:21:36 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:09s. Time for last 10,000,000: 16s. Last read position: chr1:150,625,661
INFO 2026-06-08 09:21:53 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:26s. Time for last 10,000,000: 16s. Last read position: chr1:162,503,810
INFO 2026-06-08 09:22:11 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:43s. Time for last 10,000,000: 17s. Last read position: chr1:219,973,213
INFO 2026-06-08 09:22:28 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:01s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:22:45 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:18s. Time for last 10,000,000: 17s. Last read position: chr2:79,157,637
INFO 2026-06-08 09:23:02 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:35s. Time for last 10,000,000: 17s. Last read position: chr2:162,215,922
INFO 2026-06-08 09:23:20 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:52s. Time for last 10,000,000: 17s. Last read position: chr2:215,365,505
INFO 2026-06-08 09:23:36 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:09s. Time for last 10,000,000: 16s. Last read position: chr2:215,408,314
INFO 2026-06-08 09:23:53 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:26s. Time for last 10,000,000: 17s. Last read position: chr2:237,344,462
INFO 2026-06-08 09:24:11 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:44s. Time for last 10,000,000: 17s. Last read position: chr3:48,581,911
INFO 2026-06-08 09:24:28 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:01s. Time for last 10,000,000: 17s. Last read position: chr3:128,650,680
INFO 2026-06-08 09:24:47 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:19s. Time for last 10,000,000: 18s. Last read position: chr3:196,807,905
INFO 2026-06-08 09:25:04 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 17s. Last read position: chr4:85,853,764
INFO 2026-06-08 09:25:21 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 17s. Last read position: chr5:34,914,828
INFO 2026-06-08 09:25:39 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:11s. Time for last 10,000,000: 17s. Last read position: chr5:138,810,108
INFO 2026-06-08 09:25:56 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:29s. Time for last 10,000,000: 17s. Last read position: chr5:171,400,880
INFO 2026-06-08 09:26:13 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:46s. Time for last 10,000,000: 17s. Last read position: chr6:31,170,407
INFO 2026-06-08 09:26:30 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:03s. Time for last 10,000,000: 17s. Last read position: chr6:47,286,130
INFO 2026-06-08 09:26:47 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:20s. Time for last 10,000,000: 17s. Last read position: chr6:158,784,672
INFO 2026-06-08 09:27:04 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:37s. Time for last 10,000,000: 17s. Last read position: chr7:43,876,530
INFO 2026-06-08 09:27:22 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:55s. Time for last 10,000,000: 17s. Last read position: chr7:94,417,748
INFO 2026-06-08 09:27:39 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:12s. Time for last 10,000,000: 17s. Last read position: chr7:134,950,408
INFO 2026-06-08 09:27:57 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:29s. Time for last 10,000,000: 17s. Last read position: chr8:33,549,431
INFO 2026-06-08 09:28:14 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:47s. Time for last 10,000,000: 17s. Last read position: chr8:143,918,603
INFO 2026-06-08 09:28:31 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:04s. Time for last 10,000,000: 17s. Last read position: chr9:98,997,005
INFO 2026-06-08 09:28:49 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:22s. Time for last 10,000,000: 17s. Last read position: chr9:133,071,121
INFO 2026-06-08 09:29:06 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:39s. Time for last 10,000,000: 17s. Last read position: chr10:33,180,114
INFO 2026-06-08 09:29:23 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:56s. Time for last 10,000,000: 17s. Last read position: chr10:116,559,218
INFO 2026-06-08 09:29:40 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:13s. Time for last 10,000,000: 17s. Last read position: chr11:1,246,040
INFO 2026-06-08 09:29:57 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:30s. Time for last 10,000,000: 17s. Last read position: chr11:57,808,244
INFO 2026-06-08 09:30:15 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:48s. Time for last 10,000,000: 17s. Last read position: chr11:72,014,365
INFO 2026-06-08 09:30:32 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:05s. Time for last 10,000,000: 17s. Last read position: chr12:6,587,388
INFO 2026-06-08 09:30:49 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:22s. Time for last 10,000,000: 17s. Last read position: chr12:53,723,731
INFO 2026-06-08 09:31:07 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:40s. Time for last 10,000,000: 17s. Last read position: chr12:112,944,506
INFO 2026-06-08 09:31:24 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:57s. Time for last 10,000,000: 17s. Last read position: chr13:110,308,091
INFO 2026-06-08 09:31:42 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:14s. Time for last 10,000,000: 17s. Last read position: chr14:68,921,036
INFO 2026-06-08 09:31:59 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:32s. Time for last 10,000,000: 17s. Last read position: chr14:104,950,741
INFO 2026-06-08 09:32:16 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:49s. Time for last 10,000,000: 17s. Last read position: chr15:48,537,737
INFO 2026-06-08 09:32:34 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:06s. Time for last 10,000,000: 17s. Last read position: chr15:88,899,367
INFO 2026-06-08 09:32:51 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:24s. Time for last 10,000,000: 17s. Last read position: chr16:14,919,389
INFO 2026-06-08 09:33:08 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 17s. Last read position: chr16:30,069,847
INFO 2026-06-08 09:33:26 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:58s. Time for last 10,000,000: 17s. Last read position: chr16:75,205,382
INFO 2026-06-08 09:33:43 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:16s. Time for last 10,000,000: 17s. Last read position: chr17:7,577,573
INFO 2026-06-08 09:34:00 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:33s. Time for last 10,000,000: 17s. Last read position: chr17:39,716,531
INFO 2026-06-08 09:34:17 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:50s. Time for last 10,000,000: 17s. Last read position: chr17:50,185,949
INFO 2026-06-08 09:34:34 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:07s. Time for last 10,000,000: 16s. Last read position: chr17:50,189,435
INFO 2026-06-08 09:34:51 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:24s. Time for last 10,000,000: 17s. Last read position: chr17:50,192,679
INFO 2026-06-08 09:35:08 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:41s. Time for last 10,000,000: 16s. Last read position: chr17:50,195,614
INFO 2026-06-08 09:35:25 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:58s. Time for last 10,000,000: 17s. Last read position: chr17:50,199,790
INFO 2026-06-08 09:35:43 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:16s. Time for last 10,000,000: 17s. Last read position: chr17:76,688,156
INFO 2026-06-08 09:36:00 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:33s. Time for last 10,000,000: 17s. Last read position: chr18:54,274,077
INFO 2026-06-08 09:36:17 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:50s. Time for last 10,000,000: 17s. Last read position: chr19:10,467,574
INFO 2026-06-08 09:36:35 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:08s. Time for last 10,000,000: 17s. Last read position: chr19:36,114,339
INFO 2026-06-08 09:36:52 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:25s. Time for last 10,000,000: 17s. Last read position: chr19:47,750,975
INFO 2026-06-08 09:37:09 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:42s. Time for last 10,000,000: 17s. Last read position: chr20:17,660,125
INFO 2026-06-08 09:37:26 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:59s. Time for last 10,000,000: 17s. Last read position: chr20:62,830,541
INFO 2026-06-08 09:37:43 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:16s. Time for last 10,000,000: 16s. Last read position: chr21:46,121,580
INFO 2026-06-08 09:38:00 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:33s. Time for last 10,000,000: 16s. Last read position: chr22:42,067,116
INFO 2026-06-08 09:38:17 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:50s. Time for last 10,000,000: 17s. Last read position: chrX:66,200,625
INFO 2026-06-08 09:38:34 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:07s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-08 09:38:41 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:38:41 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:38:41 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:38:41 MarkDuplicates Before output close freeMemory: 203774384; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:38:41 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:38:41 MarkDuplicates After output close freeMemory: 104020264; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:38:41 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 45.00 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory