Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/f50e2bd4fe13b63cbe7cdd7be243ab/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/f50e2bd4fe13b63cbe7cdd7be243ab/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/dc3aec2566cd6ee505f0009abe4574/aih-tih-sc-06a169-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-06a169-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-06a169-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-06a169-R1_A23WJ53LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:39:37.305 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:39:37 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-06a169-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-06a169-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-06a169-R1_A23WJ53LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:39:37 GMT 2026] Executing as ?@nf-bdf50e2bd4fe13b63cbe7cdd7be243ab-63853-9rnxb on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:39:37 MarkDuplicates Start of doWork freeMemory: 105828584; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:39:37 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:39:37 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,296,611
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 2493 as yet unmatched pairs. 199 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,675,497
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 5333 as yet unmatched pairs. 544 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:3,860,447
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 7128 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,355,030
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 9986 as yet unmatched pairs. 776 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:10,137,084
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 11303 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:12,029,105
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 13259 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:15,935,247
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 15520 as yet unmatched pairs. 567 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:17,607,948
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 17847 as yet unmatched pairs. 972 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:21,279,207
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 19013 as yet unmatched pairs. 378 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:22,804,589
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 21547 as yet unmatched pairs. 786 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:25,829,704
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 22872 as yet unmatched pairs. 441 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:28,535,346
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 24480 as yet unmatched pairs. 296 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:32,376,626
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 26604 as yet unmatched pairs. 288 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:35,478,979
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 28391 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:39,357,430
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 30465 as yet unmatched pairs. 253 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:42,414,844
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 32124 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:43,597,750
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 34846 as yet unmatched pairs. 868 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:45,020,642
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 35906 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:46,718,028
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 38528 as yet unmatched pairs. 779 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:53,930,106
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 39674 as yet unmatched pairs. 135 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:61,763,124
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 41880 as yet unmatched pairs. 425 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:71,078,498
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 44678 as yet unmatched pairs. 1599 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:93,448,178
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 44964 as yet unmatched pairs. 135 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:109,281,142
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 46363 as yet unmatched pairs. 67 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:111,500,311
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 48275 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:114,421,446
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 50726 as yet unmatched pairs. 773 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:117,878,037
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 51724 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:120,814,865
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 53696 as yet unmatched pairs. 439 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:146,298,572
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 54097 as yet unmatched pairs. 19 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:149,098,478
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 55100 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:149,923,991
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 56545 as yet unmatched pairs. 419 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:150,964,353
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 58361 as yet unmatched pairs. 308 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:151,683,404
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 60184 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,606
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 71474 as yet unmatched pairs. 9607 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:154,601,259
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 64073 as yet unmatched pairs. 728 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:155,190,038
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 65528 as yet unmatched pairs. 258 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:155,747,498
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 66956 as yet unmatched pairs. 135 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:156,137,209
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 71203 as yet unmatched pairs. 2260 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:156,958,820
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 71247 as yet unmatched pairs. 339 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:161,161,962
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 72905 as yet unmatched pairs. 158 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:167,128,086
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 74747 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:171,532,861
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 76712 as yet unmatched pairs. 214 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:178,443,005
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 78372 as yet unmatched pairs. 238 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:184,795,419
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 79781 as yet unmatched pairs. 37 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:197,101,874
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 81454 as yet unmatched pairs. 191 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:202,012,728
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 84436 as yet unmatched pairs. 1244 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:204,125,913
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 85257 as yet unmatched pairs. 309 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:206,930,304
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 88450 as yet unmatched pairs. 1624 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:209,629,768
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 89342 as yet unmatched pairs. 503 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:220,212,887
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 90781 as yet unmatched pairs. 123 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:226,071,590
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 92507 as yet unmatched pairs. 182 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:230,425,892
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 94414 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:235,693,424
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 96720 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:246,724,503
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 98874 as yet unmatched pairs. 424 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr2:9,630,298
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 100702 as yet unmatched pairs. 100295 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:20,202,126
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 102720 as yet unmatched pairs. 102312 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:25,810,441
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 104065 as yet unmatched pairs. 103654 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr2:27,603,247
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 105760 as yet unmatched pairs. 105337 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:32,545,670
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 107910 as yet unmatched pairs. 107476 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 422348 as yet unmatched pairs. 89926 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 920590 as yet unmatched pairs. 63324 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,407
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 925918 as yet unmatched pairs. 63043 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:38,997,020
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 980354 as yet unmatched pairs. 59151 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:43,586,445
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 978986 as yet unmatched pairs. 57734 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:47,690,750
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 976370 as yet unmatched pairs. 55104 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:54,974,680
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 975337 as yet unmatched pairs. 54063 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:62,147,171
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 972685 as yet unmatched pairs. 51403 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:69,804,561
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 971899 as yet unmatched pairs. 50607 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:74,047,750
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 969700 as yet unmatched pairs. 48401 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:84,870,533
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 968283 as yet unmatched pairs. 46980 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:86,604,730
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 965805 as yet unmatched pairs. 44498 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:96,283,206
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 964665 as yet unmatched pairs. 43342 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:99,382,818
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 962957 as yet unmatched pairs. 41628 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:108,470,337
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 961280 as yet unmatched pairs. 39947 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:109,804,090
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 959708 as yet unmatched pairs. 38369 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:113,198,760
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 959022 as yet unmatched pairs. 37680 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:127,502,849
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 957002 as yet unmatched pairs. 35655 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:131,492,005
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 955331 as yet unmatched pairs. 33973 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:156,568,836
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 953598 as yet unmatched pairs. 32224 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:169,811,242
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 952184 as yet unmatched pairs. 30799 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:175,181,361
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 950386 as yet unmatched pairs. 28994 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:186,625,495
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 948990 as yet unmatched pairs. 27593 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:191,073,142
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 946909 as yet unmatched pairs. 25505 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:200,931,369
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 945491 as yet unmatched pairs. 24087 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:206,159,968
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 945674 as yet unmatched pairs. 24254 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:215,364,901
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 950637 as yet unmatched pairs. 29214 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,328
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 946392 as yet unmatched pairs. 24969 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:215,384,957
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 944734 as yet unmatched pairs. 23309 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,187
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 946025 as yet unmatched pairs. 24600 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:215,424,297
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 941647 as yet unmatched pairs. 20222 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:216,499,360
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 945472 as yet unmatched pairs. 24046 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:218,440,729
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 933500 as yet unmatched pairs. 12070 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:219,541,839
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 931230 as yet unmatched pairs. 9798 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:230,759,598
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 928972 as yet unmatched pairs. 7525 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:232,811,246
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 927379 as yet unmatched pairs. 5926 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:237,762,963
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 925687 as yet unmatched pairs. 4228 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:241,229,858
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 923888 as yet unmatched pairs. 2429 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr3:8,767,291
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 921000 as yet unmatched pairs. 53667 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr3:10,270,966
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 919147 as yet unmatched pairs. 51813 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:13,343,251
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 917331 as yet unmatched pairs. 49992 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr3:25,618,688
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 915554 as yet unmatched pairs. 48212 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr3:37,054,434
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 913723 as yet unmatched pairs. 46376 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:39,412,030
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 914254 as yet unmatched pairs. 46883 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:42,632,658
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 910226 as yet unmatched pairs. 42846 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:46,923,271
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 908301 as yet unmatched pairs. 40919 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:47,706,511
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 906297 as yet unmatched pairs. 38900 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:48,574,532
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 904267 as yet unmatched pairs. 36861 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:49,027,036
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 902334 as yet unmatched pairs. 34923 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:49,532,682
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 900442 as yet unmatched pairs. 33022 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:50,273,987
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 898827 as yet unmatched pairs. 31396 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:52,198,237
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 896428 as yet unmatched pairs. 28997 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:52,694,037
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 894696 as yet unmatched pairs. 27263 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:58,138,417
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 893722 as yet unmatched pairs. 26282 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:74,614,436
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 890818 as yet unmatched pairs. 23363 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:101,853,291
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 889457 as yet unmatched pairs. 21999 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:120,409,544
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 887968 as yet unmatched pairs. 20496 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:124,637,199
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 886318 as yet unmatched pairs. 18838 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:128,153,518
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 884283 as yet unmatched pairs. 16794 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:132,447,336
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 882270 as yet unmatched pairs. 14773 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:141,876,806
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 880673 as yet unmatched pairs. 13176 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr3:155,168,573
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 878804 as yet unmatched pairs. 11299 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:170,360,962
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 878019 as yet unmatched pairs. 10500 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:183,672,379
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 875852 as yet unmatched pairs. 8322 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:184,573,139
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 875645 as yet unmatched pairs. 8101 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,799
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 873661 as yet unmatched pairs. 6108 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,215
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 872383 as yet unmatched pairs. 4822 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,751
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 872174 as yet unmatched pairs. 4609 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:196,058,221
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 869524 as yet unmatched pairs. 1957 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr4:867,394
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 867593 as yet unmatched pairs. 24518 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr4:1,731,235
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 865480 as yet unmatched pairs. 22403 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr4:2,928,443
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 862977 as yet unmatched pairs. 19896 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr4:8,088,181
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 861176 as yet unmatched pairs. 18094 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr4:24,556,321
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 859837 as yet unmatched pairs. 16751 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr4:41,013,960
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 857355 as yet unmatched pairs. 14262 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr4:56,910,629
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 855830 as yet unmatched pairs. 12731 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr4:73,147,357
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 854062 as yet unmatched pairs. 10939 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr4:76,897,706
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 852023 as yet unmatched pairs. 8900 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr4:87,981,479
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 851905 as yet unmatched pairs. 8777 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:113,288,424
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 848746 as yet unmatched pairs. 5601 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr4:145,137,554
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 847151 as yet unmatched pairs. 3994 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr4:168,683,035
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 845601 as yet unmatched pairs. 2438 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr4:186,621,633
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 844073 as yet unmatched pairs. 904 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr5:1,466,879
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 842076 as yet unmatched pairs. 40820 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr5:14,304,480
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 841315 as yet unmatched pairs. 40049 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr5:14,787,342
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 838134 as yet unmatched pairs. 36868 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr5:37,337,884
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 836293 as yet unmatched pairs. 35010 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr5:56,913,030
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 834568 as yet unmatched pairs. 33279 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr5:71,109,537
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 833392 as yet unmatched pairs. 32102 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr5:81,513,628
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 831733 as yet unmatched pairs. 30420 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr5:96,754,059
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 830523 as yet unmatched pairs. 29200 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr5:119,224,733
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 828621 as yet unmatched pairs. 27275 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr5:128,182,929
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 829037 as yet unmatched pairs. 27685 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr5:134,143,609
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 824993 as yet unmatched pairs. 23621 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr5:138,431,504
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 823268 as yet unmatched pairs. 21886 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr5:140,528,003
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 821643 as yet unmatched pairs. 20225 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr5:141,863,768
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 820569 as yet unmatched pairs. 19151 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:149,505,488
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 819432 as yet unmatched pairs. 17984 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,239
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 829268 as yet unmatched pairs. 27815 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:150,649,203
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 815671 as yet unmatched pairs. 14217 records in RAM.
INFO 2026-06-08 08:44:10 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:154,902,655
INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 812499 as yet unmatched pairs. 11038 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:168,568,740
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 810875 as yet unmatched pairs. 9399 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:171,407,702
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 815811 as yet unmatched pairs. 14335 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:177,301,731
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 807556 as yet unmatched pairs. 6070 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:179,615,584
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 806125 as yet unmatched pairs. 4622 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:179,823,877
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 807965 as yet unmatched pairs. 6453 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:181,237,660
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 804143 as yet unmatched pairs. 2630 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr6:7,211,582
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 800654 as yet unmatched pairs. 48305 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr6:7,580,823
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 798936 as yet unmatched pairs. 46587 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr6:17,688,522
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 796531 as yet unmatched pairs. 44175 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr6:26,158,405
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 795745 as yet unmatched pairs. 43381 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr6:27,893,445
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 792692 as yet unmatched pairs. 40304 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr6:30,552,581
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 790910 as yet unmatched pairs. 38517 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr6:31,182,019
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 788940 as yet unmatched pairs. 36532 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr6:31,637,302
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 787439 as yet unmatched pairs. 35030 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr6:31,827,956
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 786385 as yet unmatched pairs. 33972 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr6:32,115,732
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 785083 as yet unmatched pairs. 32670 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr6:33,201,268
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 782612 as yet unmatched pairs. 30198 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr6:33,667,149
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 780498 as yet unmatched pairs. 28083 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr6:35,478,606
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 778155 as yet unmatched pairs. 25739 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr6:41,590,108
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 776647 as yet unmatched pairs. 24225 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr6:43,187,807
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 774422 as yet unmatched pairs. 21995 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr6:44,249,738
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 773021 as yet unmatched pairs. 20592 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:54,941,747
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 770402 as yet unmatched pairs. 17972 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:75,879,902
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 768841 as yet unmatched pairs. 16408 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr6:89,084,072
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 768049 as yet unmatched pairs. 15602 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:108,663,675
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 765807 as yet unmatched pairs. 13349 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:125,045,266
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 763312 as yet unmatched pairs. 10852 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:136,276,472
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 761870 as yet unmatched pairs. 9410 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr6:143,942,015
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 759917 as yet unmatched pairs. 7443 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:154,808,751
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 758042 as yet unmatched pairs. 5567 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,831
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 756304 as yet unmatched pairs. 3828 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:163,535,040
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 754208 as yet unmatched pairs. 1731 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr7:838,894
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 753029 as yet unmatched pairs. 52120 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr7:2,539,176
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 749764 as yet unmatched pairs. 48848 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr7:5,371,037
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 747817 as yet unmatched pairs. 46901 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,384
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 750556 as yet unmatched pairs. 49635 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 2s. Last read position: chr7:6,593,760
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 743316 as yet unmatched pairs. 42373 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr7:26,192,495
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 742171 as yet unmatched pairs. 41221 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr7:35,879,869
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 739773 as yet unmatched pairs. 38814 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr7:44,113,667
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 738162 as yet unmatched pairs. 37199 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr7:50,446,224
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 736039 as yet unmatched pairs. 35058 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr7:66,823,998
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 734205 as yet unmatched pairs. 33197 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,421
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 733310 as yet unmatched pairs. 32301 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr7:74,590,941
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 731233 as yet unmatched pairs. 30185 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr7:75,985,651
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 730488 as yet unmatched pairs. 29415 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr7:81,717,245
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 728389 as yet unmatched pairs. 27316 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr7:94,404,564
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 728751 as yet unmatched pairs. 27674 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr7:98,993,565
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 725383 as yet unmatched pairs. 24300 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,166,608
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 723374 as yet unmatched pairs. 22282 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,885,021
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 721345 as yet unmatched pairs. 20241 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr7:101,036,883
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 720668 as yet unmatched pairs. 19547 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr7:102,278,047
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 718174 as yet unmatched pairs. 17037 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:102,652,384
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 718701 as yet unmatched pairs. 17564 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr7:107,975,858
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 716098 as yet unmatched pairs. 14943 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 2s. Last read position: chr7:126,446,090
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 714700 as yet unmatched pairs. 13530 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:128,084,723
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 715098 as yet unmatched pairs. 13926 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:134,928,785
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 711264 as yet unmatched pairs. 10079 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr7:140,091,849
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 709661 as yet unmatched pairs. 8476 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:144,187,031
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 707673 as yet unmatched pairs. 6488 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:150,371,852
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 706148 as yet unmatched pairs. 4962 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:152,117,248
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 703328 as yet unmatched pairs. 2136 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:158,759,558
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 701697 as yet unmatched pairs. 505 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr8:18,057,408
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 699559 as yet unmatched pairs. 54135 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr8:25,382,706
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 697768 as yet unmatched pairs. 52328 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr8:37,698,214
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 699589 as yet unmatched pairs. 54149 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr8:41,934,292
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 693887 as yet unmatched pairs. 48447 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr8:51,820,603
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 692146 as yet unmatched pairs. 46706 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr8:60,854,372
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 691020 as yet unmatched pairs. 45572 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr8:70,113,546
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 689630 as yet unmatched pairs. 44180 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr8:80,038,108
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 688020 as yet unmatched pairs. 42570 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr8:94,165,876
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 686198 as yet unmatched pairs. 40746 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr8:98,195,978
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 684313 as yet unmatched pairs. 38861 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr8:100,712,696
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 685441 as yet unmatched pairs. 39986 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr8:102,298,409
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 680960 as yet unmatched pairs. 35487 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr8:116,857,388
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 680165 as yet unmatched pairs. 34690 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr8:125,043,825
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 677316 as yet unmatched pairs. 31838 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr8:132,836,702
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 675560 as yet unmatched pairs. 30076 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr8:140,890,700
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 674017 as yet unmatched pairs. 28511 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,586,738
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 672524 as yet unmatched pairs. 27010 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,816,570
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 669202 as yet unmatched pairs. 23675 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,511
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 668362 as yet unmatched pairs. 22835 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,435
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 670456 as yet unmatched pairs. 24929 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 0s. Last read position: chr8:143,860,285
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 668290 as yet unmatched pairs. 22763 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,884
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 667508 as yet unmatched pairs. 21980 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,563
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 665708 as yet unmatched pairs. 20180 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,219
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 668317 as yet unmatched pairs. 22789 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,980
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 669209 as yet unmatched pairs. 23681 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,566
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 667159 as yet unmatched pairs. 21631 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,198
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 665155 as yet unmatched pairs. 19627 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,824
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 662961 as yet unmatched pairs. 17419 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,541
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 659216 as yet unmatched pairs. 13674 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,306
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 659344 as yet unmatched pairs. 13802 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,870,234
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 659752 as yet unmatched pairs. 14210 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,679
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 656709 as yet unmatched pairs. 11167 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr8:143,930,163
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 655001 as yet unmatched pairs. 9456 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr8:144,137,892
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 649863 as yet unmatched pairs. 4316 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 60s. Last read position: chr8:144,360,590
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 649136 as yet unmatched pairs. 3571 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 2s. Last read position: chr9:710,935
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 645809 as yet unmatched pairs. 43408 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr9:8,341,108
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 644191 as yet unmatched pairs. 41766 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr9:19,346,553
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 642834 as yet unmatched pairs. 40383 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr9:33,354,866
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 640627 as yet unmatched pairs. 38172 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr9:35,548,063
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 638571 as yet unmatched pairs. 36111 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr9:37,422,740
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 637001 as yet unmatched pairs. 34515 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr9:70,413,032
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 635025 as yet unmatched pairs. 32525 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr9:86,027,847
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 633698 as yet unmatched pairs. 31196 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr9:93,256,349
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 632061 as yet unmatched pairs. 29526 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr9:97,645,212
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 629993 as yet unmatched pairs. 27453 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr9:105,381,268
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 628178 as yet unmatched pairs. 25633 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr9:112,143,563
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 626037 as yet unmatched pairs. 23488 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 2s. Last read position: chr9:115,059,730
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 624188 as yet unmatched pairs. 21635 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr9:124,857,953
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 622685 as yet unmatched pairs. 20129 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr9:128,260,717
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 620234 as yet unmatched pairs. 17667 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr9:129,822,677
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 618168 as yet unmatched pairs. 15600 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr9:131,446,535
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 616709 as yet unmatched pairs. 14134 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr9:133,255,931
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 614857 as yet unmatched pairs. 12277 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr9:134,796,847
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 613039 as yet unmatched pairs. 10458 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr9:136,496,446
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 610807 as yet unmatched pairs. 8224 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr9:136,840,801
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 610659 as yet unmatched pairs. 8074 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr9:137,078,124
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 605831 as yet unmatched pairs. 3239 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr9:137,605,809
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 603403 as yet unmatched pairs. 807 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr10:5,768,263
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 602037 as yet unmatched pairs. 36061 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr10:17,229,612
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 600864 as yet unmatched pairs. 34875 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr10:28,535,661
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 598545 as yet unmatched pairs. 32551 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr10:32,055,969
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 596996 as yet unmatched pairs. 31001 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr10:45,700,060
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 594723 as yet unmatched pairs. 28725 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr10:48,010,192
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 593602 as yet unmatched pairs. 27603 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr10:62,091,502
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 592214 as yet unmatched pairs. 26190 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr10:70,404,372
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 590771 as yet unmatched pairs. 24732 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr10:73,794,281
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 588360 as yet unmatched pairs. 22313 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr10:79,513,048
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 586207 as yet unmatched pairs. 20158 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr10:87,360,840
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 584788 as yet unmatched pairs. 18734 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr10:94,234,130
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 583547 as yet unmatched pairs. 17488 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr10:97,385,238
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 581552 as yet unmatched pairs. 15491 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr10:100,924,436
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 579920 as yet unmatched pairs. 13850 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 2s. Last read position: chr10:102,400,701
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 577793 as yet unmatched pairs. 11723 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr10:110,126,440
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 576750 as yet unmatched pairs. 10668 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 2s. Last read position: chr10:114,277,909
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 574547 as yet unmatched pairs. 8464 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr10:119,577,719
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 572435 as yet unmatched pairs. 6352 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr10:122,576,484
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 573671 as yet unmatched pairs. 7588 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr10:122,611,228
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 570173 as yet unmatched pairs. 4081 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr10:125,841,261
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 568523 as yet unmatched pairs. 2426 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr10:133,352,103
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 568024 as yet unmatched pairs. 1921 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr11:320,602
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 568425 as yet unmatched pairs. 67664 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr11:610,665
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 562419 as yet unmatched pairs. 61657 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr11:850,367
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 559884 as yet unmatched pairs. 59122 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr11:2,403,101
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 558063 as yet unmatched pairs. 57286 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr11:6,479,243
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 556412 as yet unmatched pairs. 55601 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr11:10,519,033
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 553982 as yet unmatched pairs. 53158 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr11:17,074,442
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 554789 as yet unmatched pairs. 53960 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr11:32,934,573
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 550748 as yet unmatched pairs. 49919 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr11:45,254,327
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 548753 as yet unmatched pairs. 47921 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr11:46,879,191
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 547477 as yet unmatched pairs. 46645 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 2s. Last read position: chr11:57,328,305
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 544947 as yet unmatched pairs. 44111 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr11:59,806,322
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 543321 as yet unmatched pairs. 42477 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr11:61,967,326
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 542526 as yet unmatched pairs. 41647 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr11:62,531,911
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 540543 as yet unmatched pairs. 39664 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr11:62,724,298
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 538196 as yet unmatched pairs. 37317 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr11:64,244,708
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 537773 as yet unmatched pairs. 36893 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr11:64,766,975
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 533988 as yet unmatched pairs. 33095 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr11:65,208,054
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 532271 as yet unmatched pairs. 31378 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,865
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 531224 as yet unmatched pairs. 30312 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr11:66,337,834
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 527301 as yet unmatched pairs. 26381 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr11:67,352,002
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 525973 as yet unmatched pairs. 25053 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr11:68,347,942
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 523588 as yet unmatched pairs. 22668 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr11:69,648,039
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 524386 as yet unmatched pairs. 23466 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:72,016,241
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 519398 as yet unmatched pairs. 18464 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr11:74,976,895
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 517164 as yet unmatched pairs. 16225 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:77,691,159
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 515469 as yet unmatched pairs. 14523 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:93,809,821
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 513650 as yet unmatched pairs. 12695 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr11:102,865,811
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 511724 as yet unmatched pairs. 10767 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:117,218,434
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 510240 as yet unmatched pairs. 9283 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:118,896,667
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 508450 as yet unmatched pairs. 7488 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 2s. Last read position: chr11:120,420,802
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 506732 as yet unmatched pairs. 5752 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:124,748,465
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 504821 as yet unmatched pairs. 3839 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:130,129,116
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 503138 as yet unmatched pairs. 2146 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr12:753,926
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 501715 as yet unmatched pairs. 53840 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr12:6,235,528
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 500278 as yet unmatched pairs. 52396 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr12:6,678,300
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 497166 as yet unmatched pairs. 49284 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr12:8,082,290
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 494922 as yet unmatched pairs. 47040 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr12:12,908,314
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 494504 as yet unmatched pairs. 46620 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr12:22,062,293
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 491870 as yet unmatched pairs. 43981 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr12:42,313,944
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 490044 as yet unmatched pairs. 42154 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr12:48,830,481
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 488259 as yet unmatched pairs. 40368 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,657
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 486864 as yet unmatched pairs. 38973 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr12:50,732,489
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 484614 as yet unmatched pairs. 36719 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr12:52,949,434
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 484115 as yet unmatched pairs. 36218 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr12:53,455,967
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 482885 as yet unmatched pairs. 34988 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr12:54,408,211
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 479417 as yet unmatched pairs. 31520 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr12:56,159,600
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 478330 as yet unmatched pairs. 30433 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr12:56,639,108
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 477600 as yet unmatched pairs. 29703 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 2s. Last read position: chr12:57,098,548
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 476045 as yet unmatched pairs. 28148 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr12:57,185,605
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 473369 as yet unmatched pairs. 25472 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr12:57,719,032
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 470743 as yet unmatched pairs. 22843 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr12:68,553,417
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 469108 as yet unmatched pairs. 21199 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr12:79,689,736
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 467304 as yet unmatched pairs. 19394 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr12:98,600,033
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 466898 as yet unmatched pairs. 18988 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr12:106,314,377
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 464230 as yet unmatched pairs. 16320 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr12:111,362,729
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 463095 as yet unmatched pairs. 15175 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr12:112,907,071
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 461986 as yet unmatched pairs. 14066 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr12:118,150,948
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 458942 as yet unmatched pairs. 11018 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr12:120,534,648
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 457381 as yet unmatched pairs. 9453 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,686
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 457240 as yet unmatched pairs. 9308 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr12:124,012,105
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 453373 as yet unmatched pairs. 5438 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:130,873,084
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 452416 as yet unmatched pairs. 4481 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:132,714,991
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 449068 as yet unmatched pairs. 1124 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr13:20,051,582
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 448337 as yet unmatched pairs. 23690 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr13:24,469,023
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 445850 as yet unmatched pairs. 21203 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr13:27,968,657
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 446213 as yet unmatched pairs. 21566 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr13:37,033,454
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 441969 as yet unmatched pairs. 17322 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr13:42,970,655
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 440607 as yet unmatched pairs. 15952 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr13:46,158,844
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 438495 as yet unmatched pairs. 13840 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr13:52,461,446
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 437038 as yet unmatched pairs. 12381 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr13:75,849,280
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 435987 as yet unmatched pairs. 11320 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 2s. Last read position: chr13:98,368,182
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 433713 as yet unmatched pairs. 9037 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr13:102,863,003
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 431690 as yet unmatched pairs. 7003 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr13:110,195,098
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 430400 as yet unmatched pairs. 5712 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr13:110,910,640
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 428035 as yet unmatched pairs. 3337 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr13:114,304,810
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 425147 as yet unmatched pairs. 448 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr14:21,429,174
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 423037 as yet unmatched pairs. 29447 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr14:23,321,740
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 421809 as yet unmatched pairs. 28219 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 2s. Last read position: chr14:30,935,163
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 419077 as yet unmatched pairs. 25486 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr14:39,177,635
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 417779 as yet unmatched pairs. 24175 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr14:50,912,168
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 415980 as yet unmatched pairs. 22370 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr14:57,237,366
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 414398 as yet unmatched pairs. 20787 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr14:64,521,811
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 412677 as yet unmatched pairs. 19064 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr14:68,878,477
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 411674 as yet unmatched pairs. 18049 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr14:73,492,791
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 408990 as yet unmatched pairs. 15358 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr14:75,898,461
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 407196 as yet unmatched pairs. 13561 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr14:91,313,938
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 405338 as yet unmatched pairs. 11691 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr14:96,502,521
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 403688 as yet unmatched pairs. 10038 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr14:102,039,233
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 402058 as yet unmatched pairs. 8378 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr14:103,503,093
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 399708 as yet unmatched pairs. 6027 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr14:104,772,434
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 398216 as yet unmatched pairs. 4534 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr14:105,249,041
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 395406 as yet unmatched pairs. 1720 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr15:22,546,578
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 393558 as yet unmatched pairs. 30672 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr15:29,710,909
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 392101 as yet unmatched pairs. 29214 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr15:34,381,736
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 390909 as yet unmatched pairs. 28011 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr15:40,899,694
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 388725 as yet unmatched pairs. 25826 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr15:43,534,678
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 387011 as yet unmatched pairs. 24111 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr15:48,474,627
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 385387 as yet unmatched pairs. 22487 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr15:59,174,204
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 383875 as yet unmatched pairs. 20974 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr15:64,162,041
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 382694 as yet unmatched pairs. 19782 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr15:66,503,139
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 381619 as yet unmatched pairs. 18707 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr15:70,684,241
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 378167 as yet unmatched pairs. 15255 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr15:73,951,856
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 376081 as yet unmatched pairs. 13155 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr15:74,956,365
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 374754 as yet unmatched pairs. 11827 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr15:77,056,168
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 373008 as yet unmatched pairs. 10080 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr15:81,299,544
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 370112 as yet unmatched pairs. 7183 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr15:85,580,549
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 368881 as yet unmatched pairs. 5950 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr15:89,281,812
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 367816 as yet unmatched pairs. 4875 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr15:90,483,532
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 365960 as yet unmatched pairs. 3018 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr15:100,924,712
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 364058 as yet unmatched pairs. 1105 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr16:400,228
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 362327 as yet unmatched pairs. 61435 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr16:766,926
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 359774 as yet unmatched pairs. 58882 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr16:1,781,423
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 356985 as yet unmatched pairs. 56093 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr16:2,173,254
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 354510 as yet unmatched pairs. 53618 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr16:2,764,107
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 353101 as yet unmatched pairs. 52209 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr16:3,068,000
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 351127 as yet unmatched pairs. 50232 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr16:4,673,493
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 348459 as yet unmatched pairs. 47563 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr16:11,476,738
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 346215 as yet unmatched pairs. 45318 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr16:14,921,367
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 345100 as yet unmatched pairs. 44203 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr16:16,114,965
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 344331 as yet unmatched pairs. 43434 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr16:16,393,759
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 343650 as yet unmatched pairs. 42753 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr16:18,538,583
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 342449 as yet unmatched pairs. 41552 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr16:21,402,515
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 340623 as yet unmatched pairs. 39726 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,744
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 339955 as yet unmatched pairs. 39058 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr16:22,283,906
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 339296 as yet unmatched pairs. 38399 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,412
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 338845 as yet unmatched pairs. 37948 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr16:27,749,623
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 337380 as yet unmatched pairs. 36479 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr16:28,833,453
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 336397 as yet unmatched pairs. 35495 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr16:29,454,632
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 335664 as yet unmatched pairs. 34762 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr16:29,806,833
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 334704 as yet unmatched pairs. 33802 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr16:30,069,904
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 335416 as yet unmatched pairs. 34514 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr16:30,245,454
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 330300 as yet unmatched pairs. 29398 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr16:30,736,601
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 328573 as yet unmatched pairs. 27670 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr16:31,185,146
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 328430 as yet unmatched pairs. 27513 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr16:49,635,662
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 325038 as yet unmatched pairs. 24120 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr16:57,020,742
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 323255 as yet unmatched pairs. 22333 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr16:58,541,510
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 321316 as yet unmatched pairs. 20394 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr16:67,203,347
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 319340 as yet unmatched pairs. 18415 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr16:68,363,491
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 317055 as yet unmatched pairs. 16129 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr16:69,718,243
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 315699 as yet unmatched pairs. 14773 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr16:71,649,883
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 313287 as yet unmatched pairs. 12361 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:74,949,751
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 311694 as yet unmatched pairs. 10765 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr16:84,479,912
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 309464 as yet unmatched pairs. 8514 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:88,485,972
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 307395 as yet unmatched pairs. 6442 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr16:89,101,298
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 305277 as yet unmatched pairs. 4301 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr16:89,637,257
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 304867 as yet unmatched pairs. 3886 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr17:1,007,212
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 301266 as yet unmatched pairs. 93682 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr17:1,593,255
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 298610 as yet unmatched pairs. 91026 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr17:2,395,360
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 296569 as yet unmatched pairs. 88985 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr17:4,530,735
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 294617 as yet unmatched pairs. 87032 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr17:4,944,781
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 293032 as yet unmatched pairs. 85447 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr17:7,012,747
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 290903 as yet unmatched pairs. 83317 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr17:7,465,848
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 288494 as yet unmatched pairs. 80908 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr17:7,943,406
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 286554 as yet unmatched pairs. 78967 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr17:17,794,712
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 284840 as yet unmatched pairs. 77248 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr17:27,597,398
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 282761 as yet unmatched pairs. 75169 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr17:28,749,432
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 281426 as yet unmatched pairs. 73834 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr17:30,731,706
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 279208 as yet unmatched pairs. 71616 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr17:32,780,737
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 278811 as yet unmatched pairs. 71216 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr17:36,378,080
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 276420 as yet unmatched pairs. 68824 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr17:38,122,833
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 274821 as yet unmatched pairs. 67225 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,372
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 277957 as yet unmatched pairs. 70361 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr17:39,700,270
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 274794 as yet unmatched pairs. 67198 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,963
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 272237 as yet unmatched pairs. 64641 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr17:40,389,601
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 267811 as yet unmatched pairs. 60196 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr17:41,771,733
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 265984 as yet unmatched pairs. 58369 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr17:42,613,902
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 263519 as yet unmatched pairs. 55875 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr17:43,536,381
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 263528 as yet unmatched pairs. 55884 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr17:44,926,069
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 259715 as yet unmatched pairs. 52071 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr17:46,352,832
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 258079 as yet unmatched pairs. 50433 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr17:47,976,799
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 257528 as yet unmatched pairs. 49882 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr17:49,716,204
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 254446 as yet unmatched pairs. 46796 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,884
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 273192 as yet unmatched pairs. 65542 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,501
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 264228 as yet unmatched pairs. 56577 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr17:50,191,803
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 261242 as yet unmatched pairs. 53591 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,376
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 261127 as yet unmatched pairs. 53476 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,154
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 262457 as yet unmatched pairs. 54805 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,176
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 253199 as yet unmatched pairs. 45547 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,667,610
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 240550 as yet unmatched pairs. 32897 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr17:57,106,412
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 238142 as yet unmatched pairs. 30489 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr17:58,495,524
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 236069 as yet unmatched pairs. 28410 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr17:59,685,799
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 236948 as yet unmatched pairs. 29288 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr17:63,825,406
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 232647 as yet unmatched pairs. 24986 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr17:65,538,231
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 232313 as yet unmatched pairs. 24652 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:69,018,465
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 229076 as yet unmatched pairs. 21407 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:75,262,626
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 227216 as yet unmatched pairs. 19547 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:75,628,708
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 225006 as yet unmatched pairs. 17337 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:76,001,509
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 222695 as yet unmatched pairs. 15026 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:77,402,457
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 221295 as yet unmatched pairs. 13625 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr17:79,077,673
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 219000 as yet unmatched pairs. 11329 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr17:80,347,208
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 217228 as yet unmatched pairs. 9557 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,027
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 216191 as yet unmatched pairs. 8520 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:81,868,784
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 212781 as yet unmatched pairs. 5103 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:82,087,105
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 210533 as yet unmatched pairs. 2855 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr18:2,688,442
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 207619 as yet unmatched pairs. 6419 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr18:21,864,567
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 206060 as yet unmatched pairs. 4857 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr18:45,866,820
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 204550 as yet unmatched pairs. 3344 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr18:58,918,792
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 202941 as yet unmatched pairs. 1726 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 2s. Last read position: chr19:572,632
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 203681 as yet unmatched pairs. 93379 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr19:929,749
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 198614 as yet unmatched pairs. 88311 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr19:1,255,422
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 196936 as yet unmatched pairs. 86633 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr19:1,627,412
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 194102 as yet unmatched pairs. 83799 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 60s. Last read position: chr19:2,269,668
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 192258 as yet unmatched pairs. 81955 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 65s. Last read position: chr19:3,573,735
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 189199 as yet unmatched pairs. 78896 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr19:4,493,747
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 186831 as yet unmatched pairs. 76528 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 1s. Last read position: chr19:5,719,911
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 184522 as yet unmatched pairs. 74218 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 1s. Last read position: chr19:6,760,906
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 182814 as yet unmatched pairs. 72510 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr19:8,321,512
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 181055 as yet unmatched pairs. 70751 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr19:10,259,838
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 178153 as yet unmatched pairs. 67849 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr19:10,796,152
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 177011 as yet unmatched pairs. 66707 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr19:11,359,691
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 174012 as yet unmatched pairs. 63708 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr19:12,764,901
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 172166 as yet unmatched pairs. 61862 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 1s. Last read position: chr19:13,906,400
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 170820 as yet unmatched pairs. 60514 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr19:14,564,831
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 168047 as yet unmatched pairs. 57741 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr19:15,264,668
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 165879 as yet unmatched pairs. 55573 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr19:16,878,740
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 163401 as yet unmatched pairs. 53092 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 2s. Last read position: chr19:17,862,089
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 164625 as yet unmatched pairs. 54314 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr19:18,575,095
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 158879 as yet unmatched pairs. 48568 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr19:19,635,490
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 156813 as yet unmatched pairs. 46502 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr19:33,387,374
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 155087 as yet unmatched pairs. 44776 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr19:35,258,987
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 153823 as yet unmatched pairs. 43503 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr19:36,035,573
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 150352 as yet unmatched pairs. 40032 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr19:38,700,625
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 149115 as yet unmatched pairs. 38794 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr19:38,932,391
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 146993 as yet unmatched pairs. 36672 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr19:39,943,515
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 144886 as yet unmatched pairs. 34564 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr19:40,818,851
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 142565 as yet unmatched pairs. 32243 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr19:41,709,859
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 142925 as yet unmatched pairs. 32603 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr19:41,755,655
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 141181 as yet unmatched pairs. 30859 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr19:42,274,094
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 137906 as yet unmatched pairs. 27584 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr19:43,667,664
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 135461 as yet unmatched pairs. 25133 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 2s. Last read position: chr19:45,391,931
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 133245 as yet unmatched pairs. 22917 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 2s. Last read position: chr19:46,601,437
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 131461 as yet unmatched pairs. 21133 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr19:47,754,773
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 128669 as yet unmatched pairs. 18341 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr19:48,874,766
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 126320 as yet unmatched pairs. 15992 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr19:49,496,726
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 127952 as yet unmatched pairs. 17624 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr19:49,662,506
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 123428 as yet unmatched pairs. 13100 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 2s. Last read position: chr19:50,276,094
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 120562 as yet unmatched pairs. 10234 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr19:52,543,301
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 118301 as yet unmatched pairs. 7973 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr19:54,455,040
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 117556 as yet unmatched pairs. 7228 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 2s. Last read position: chr19:55,387,970
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 119240 as yet unmatched pairs. 8911 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr19:57,841,212
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 112238 as yet unmatched pairs. 1908 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr20:419,642
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 110329 as yet unmatched pairs. 34787 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr20:2,860,457
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 108266 as yet unmatched pairs. 32724 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr20:5,100,921
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 106294 as yet unmatched pairs. 30752 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr20:17,614,111
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 104780 as yet unmatched pairs. 29237 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 2s. Last read position: chr20:19,975,658
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 102303 as yet unmatched pairs. 26759 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 2s. Last read position: chr20:25,510,720
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 100419 as yet unmatched pairs. 24875 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr20:33,392,208
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 98751 as yet unmatched pairs. 23206 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr20:34,942,488
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 96835 as yet unmatched pairs. 21283 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr20:35,714,296
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 96525 as yet unmatched pairs. 20973 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr20:37,519,280
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 92844 as yet unmatched pairs. 17290 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr20:43,572,052
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 91670 as yet unmatched pairs. 16114 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr20:45,840,697
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 89344 as yet unmatched pairs. 13788 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr20:48,972,408
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 87328 as yet unmatched pairs. 11772 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr20:51,010,087
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 85510 as yet unmatched pairs. 9954 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr20:57,652,235
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 84531 as yet unmatched pairs. 8975 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr20:62,129,916
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 81607 as yet unmatched pairs. 6051 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 2s. Last read position: chr20:62,879,366
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 79722 as yet unmatched pairs. 4166 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr20:63,661,390
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 77333 as yet unmatched pairs. 1777 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr21:6,484,682
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 75242 as yet unmatched pairs. 16320 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,880
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 73688 as yet unmatched pairs. 14761 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 0s. Last read position: chr21:8,399,886
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 73345 as yet unmatched pairs. 14416 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,292
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 71952 as yet unmatched pairs. 13022 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr21:29,067,602
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 70661 as yet unmatched pairs. 11731 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr21:33,903,570
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 68687 as yet unmatched pairs. 9757 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr21:38,822,777
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 67813 as yet unmatched pairs. 8883 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr21:42,225,717
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 65447 as yet unmatched pairs. 6517 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr21:44,235,273
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 63308 as yet unmatched pairs. 4378 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,179
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 60843 as yet unmatched pairs. 1913 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr22:17,822,115
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 58615 as yet unmatched pairs. 20389 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr22:21,696,107
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 56673 as yet unmatched pairs. 18447 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr22:25,170,860
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 54404 as yet unmatched pairs. 16177 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,832
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 53014 as yet unmatched pairs. 14787 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 2s. Last read position: chr22:32,498,260
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 50404 as yet unmatched pairs. 12177 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr22:36,758,238
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 48042 as yet unmatched pairs. 9813 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr22:38,491,962
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 46367 as yet unmatched pairs. 8138 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr22:41,254,407
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 44015 as yet unmatched pairs. 5786 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr22:44,737,196
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 42247 as yet unmatched pairs. 4018 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr22:50,289,998
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 40923 as yet unmatched pairs. 2693 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chrX:2,490,210
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 37765 as yet unmatched pairs. 25106 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chrX:17,024,944
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 35881 as yet unmatched pairs. 23221 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chrX:37,570,800
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 34203 as yet unmatched pairs. 21529 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chrX:41,345,242
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 33284 as yet unmatched pairs. 20610 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chrX:47,228,567
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 31235 as yet unmatched pairs. 18561 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chrX:49,061,985
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 29102 as yet unmatched pairs. 16428 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chrX:53,415,008
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 27432 as yet unmatched pairs. 14758 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 2s. Last read position: chrX:66,032,468
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 25190 as yet unmatched pairs. 12516 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chrX:71,556,993
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 24773 as yet unmatched pairs. 12098 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chrX:78,125,254
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 22389 as yet unmatched pairs. 9714 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chrX:108,539,775
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 20196 as yet unmatched pairs. 7521 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 2s. Last read position: chrX:129,823,778
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 18838 as yet unmatched pairs. 6163 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chrX:153,506,040
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 17709 as yet unmatched pairs. 5013 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chrX:154,358,530
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 15709 as yet unmatched pairs. 3011 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chrX:155,071,484
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 12868 as yet unmatched pairs. 170 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,471
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 14697 as yet unmatched pairs. 6360 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,170
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 8571 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,014
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 4663 as yet unmatched pairs. 4653 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,087
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 64 as yet unmatched pairs. 54 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 600743099 records. 0 pairs never matched.
INFO 2026-06-08 08:59:37 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141352; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:59:37 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:59:41 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:59:41 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:00:55 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:00:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,447
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,621
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder Large duplicate set. size = 1237
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,370
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,246
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder Large duplicate set. size = 1161
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,752
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,900
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,318
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,148
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder Large duplicate set. size = 1517
INFO 2026-06-08 09:01:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,392
INFO 2026-06-08 09:01:21 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:01:21 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:02:22 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:02:29 MarkDuplicates After generateDuplicateIndexes freeMemory: 203999568; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:02:29 MarkDuplicates Marking 410445215 records as duplicates.
INFO 2026-06-08 09:02:29 MarkDuplicates Found 15554428 optical duplicate clusters.
INFO 2026-06-08 09:02:29 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:02:47 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:22,804,589
INFO 2026-06-08 09:03:04 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 17s. Last read position: chr1:53,930,106
INFO 2026-06-08 09:03:21 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:52s. Time for last 10,000,000: 17s. Last read position: chr1:149,098,478
INFO 2026-06-08 09:03:38 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:09s. Time for last 10,000,000: 16s. Last read position: chr1:161,161,962
INFO 2026-06-08 09:03:55 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:25s. Time for last 10,000,000: 16s. Last read position: chr1:220,212,887
INFO 2026-06-08 09:04:12 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:42s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:04:30 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:00s. Time for last 10,000,000: 17s. Last read position: chr2:84,870,533
INFO 2026-06-08 09:04:47 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:17s. Time for last 10,000,000: 17s. Last read position: chr2:169,811,242
INFO 2026-06-08 09:05:04 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:35s. Time for last 10,000,000: 17s. Last read position: chr2:215,424,297
INFO 2026-06-08 09:05:22 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:52s. Time for last 10,000,000: 17s. Last read position: chr3:13,343,251
INFO 2026-06-08 09:05:39 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:09s. Time for last 10,000,000: 17s. Last read position: chr3:50,273,987
INFO 2026-06-08 09:05:57 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:27s. Time for last 10,000,000: 17s. Last read position: chr3:141,876,806
INFO 2026-06-08 09:06:14 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:44s. Time for last 10,000,000: 17s. Last read position: chr4:1,731,235
INFO 2026-06-08 09:06:32 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:02s. Time for last 10,000,000: 17s. Last read position: chr4:145,137,554
INFO 2026-06-08 09:06:49 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:19s. Time for last 10,000,000: 17s. Last read position: chr5:96,754,059
INFO 2026-06-08 09:07:06 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 17s. Last read position: chr5:154,902,655
INFO 2026-06-08 09:07:24 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 17s. Last read position: chr6:26,158,405
INFO 2026-06-08 09:07:41 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:11s. Time for last 10,000,000: 17s. Last read position: chr6:41,590,108
INFO 2026-06-08 09:07:58 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:29s. Time for last 10,000,000: 17s. Last read position: chr6:154,808,751
INFO 2026-06-08 09:08:16 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:46s. Time for last 10,000,000: 17s. Last read position: chr7:44,113,667
INFO 2026-06-08 09:08:33 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:03s. Time for last 10,000,000: 17s. Last read position: chr7:100,885,021
INFO 2026-06-08 09:08:50 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:20s. Time for last 10,000,000: 17s. Last read position: chr7:150,371,852
INFO 2026-06-08 09:09:07 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:38s. Time for last 10,000,000: 17s. Last read position: chr8:80,038,108
INFO 2026-06-08 09:09:25 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:55s. Time for last 10,000,000: 17s. Last read position: chr8:143,816,570
INFO 2026-06-08 09:09:41 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:12s. Time for last 10,000,000: 16s. Last read position: chr8:143,864,824
INFO 2026-06-08 09:09:58 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:29s. Time for last 10,000,000: 16s. Last read position: chr9:19,346,553
INFO 2026-06-08 09:10:16 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:46s. Time for last 10,000,000: 17s. Last read position: chr9:115,059,730
INFO 2026-06-08 09:10:33 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:03s. Time for last 10,000,000: 17s. Last read position: chr9:137,605,809
INFO 2026-06-08 09:10:50 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:20s. Time for last 10,000,000: 17s. Last read position: chr10:79,513,048
INFO 2026-06-08 09:11:07 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:37s. Time for last 10,000,000: 17s. Last read position: chr10:122,611,228
INFO 2026-06-08 09:11:24 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:55s. Time for last 10,000,000: 17s. Last read position: chr11:32,934,573
INFO 2026-06-08 09:11:42 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:12s. Time for last 10,000,000: 17s. Last read position: chr11:65,208,054
INFO 2026-06-08 09:11:59 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:29s. Time for last 10,000,000: 17s. Last read position: chr11:102,865,811
INFO 2026-06-08 09:12:16 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:46s. Time for last 10,000,000: 17s. Last read position: chr12:12,908,314
INFO 2026-06-08 09:12:34 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:04s. Time for last 10,000,000: 17s. Last read position: chr12:56,639,108
INFO 2026-06-08 09:12:51 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:22s. Time for last 10,000,000: 17s. Last read position: chr12:118,150,948
INFO 2026-06-08 09:13:09 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:39s. Time for last 10,000,000: 17s. Last read position: chr13:42,970,655
INFO 2026-06-08 09:13:26 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:57s. Time for last 10,000,000: 17s. Last read position: chr14:23,321,740
INFO 2026-06-08 09:13:44 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:14s. Time for last 10,000,000: 17s. Last read position: chr14:96,502,521
INFO 2026-06-08 09:14:01 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:32s. Time for last 10,000,000: 17s. Last read position: chr15:48,474,627
INFO 2026-06-08 09:14:19 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:49s. Time for last 10,000,000: 17s. Last read position: chr15:89,281,812
INFO 2026-06-08 09:14:36 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:06s. Time for last 10,000,000: 17s. Last read position: chr16:11,476,738
INFO 2026-06-08 09:14:53 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:23s. Time for last 10,000,000: 17s. Last read position: chr16:28,833,453
INFO 2026-06-08 09:15:11 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 18s. Last read position: chr16:67,203,347
INFO 2026-06-08 09:15:28 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:58s. Time for last 10,000,000: 17s. Last read position: chr17:1,593,255
INFO 2026-06-08 09:15:45 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:15s. Time for last 10,000,000: 16s. Last read position: chr17:30,731,706
INFO 2026-06-08 09:16:02 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 17s. Last read position: chr17:43,536,381
INFO 2026-06-08 09:16:19 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:49s. Time for last 10,000,000: 16s. Last read position: chr17:50,198,176
INFO 2026-06-08 09:16:36 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:06s. Time for last 10,000,000: 16s. Last read position: chr17:76,001,509
INFO 2026-06-08 09:16:53 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:23s. Time for last 10,000,000: 16s. Last read position: chr18:58,918,792
INFO 2026-06-08 09:17:10 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:40s. Time for last 10,000,000: 16s. Last read position: chr19:8,321,512
INFO 2026-06-08 09:17:27 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:57s. Time for last 10,000,000: 17s. Last read position: chr19:18,575,095
INFO 2026-06-08 09:17:44 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:14s. Time for last 10,000,000: 17s. Last read position: chr19:41,755,655
INFO 2026-06-08 09:18:01 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:31s. Time for last 10,000,000: 16s. Last read position: chr19:52,543,301
INFO 2026-06-08 09:18:18 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:48s. Time for last 10,000,000: 17s. Last read position: chr20:33,392,208
INFO 2026-06-08 09:18:35 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:05s. Time for last 10,000,000: 17s. Last read position: chr20:62,879,366
INFO 2026-06-08 09:18:51 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:21s. Time for last 10,000,000: 16s. Last read position: chr21:44,235,273
INFO 2026-06-08 09:19:08 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:39s. Time for last 10,000,000: 17s. Last read position: chr22:44,737,196
INFO 2026-06-08 09:19:26 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:56s. Time for last 10,000,000: 17s. Last read position: chrX:71,556,993
INFO 2026-06-08 09:19:42 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:12s. Time for last 10,000,000: 16s. Last read position: KI270733.1:176,087
INFO 2026-06-08 09:19:50 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:19:50 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:19:50 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:19:50 MarkDuplicates Before output close freeMemory: 203968240; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:19:50 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:19:51 MarkDuplicates After output close freeMemory: 104206080; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:19:51 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 40.23 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory