File Info

Filename
aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/b3d766e63b1a5876b82ede13076f3d/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:42:21
                             Started mapping on |	Jun 08 08:44:06
                                    Finished on |	Jun 08 09:39:31
       Mapping speed, Million of reads per hour |	283.92

                          Number of input reads |	262233667
                      Average input read length |	254
                                    UNIQUE READS:
                   Uniquely mapped reads number |	251937230
                        Uniquely mapped reads % |	96.07%
                          Average mapped length |	253.69
                       Number of splices: Total |	286468448
            Number of splices: Annotated (sjdb) |	283283780
                       Number of splices: GT/AG |	283640508
                       Number of splices: GC/AG |	2044053
                       Number of splices: AT/AC |	228551
               Number of splices: Non-canonical |	555336
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.07
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.51
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6324626
             % of reads mapped to multiple loci |	2.41%
        Number of reads mapped to too many loci |	198939
             % of reads mapped to too many loci |	0.08%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	361493
       % of reads unmapped: too many mismatches |	0.14%
            Number of reads unmapped: too short |	1768171
                 % of reads unmapped: too short |	0.67%
                Number of reads unmapped: other |	143528
                     % of reads unmapped: other |	0.05%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2819449
                            % of chimeric reads |	1.08%