Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/1b7b95e236f6c6901018dddb78955c/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/db16dd744ca7c1a87fbfdadc11c964/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/db16dd744ca7c1a87fbfdadc11c964/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/18f6ba4edcdc30a4d4b79ec1baa49d/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 351591823
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	351591823
Known Splicing Events:	348772705
Partial Novel Splicing Events:	1455278
Novel Splicing Events:	1261476
Filtered Splicing Events:	102364

Total splicing  Junctions:	569127
Known Splicing Junctions:	274595
Partial Novel Splicing Junctions:	155516
Novel Splicing Junctions:	139016

===================================================================
Create BED file ...
Create Interact file ...