Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/e69a001a71ef042068a5abecc02260/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/fa26a0f7cf084461246a67bf4b77e3/fi_workdir/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/e69a001a71ef042068a5abecc02260/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 5296
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 5296
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:5296
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AGAP12P--FRMPD2 HAVANA gene 13554 48555 . + . FI_gene_label "FRMPD2^ENSG00000170324.21" ; ID "AGAP12P--FRMPD2^FRMPD2^ENSG00000170324.21" ; ccdsid "CCDS81460.1" ; exon_id "ENSE00001390154.1" ; exon_number 1 ; gene_id "AGAP12P--FRMPD2^FRMPD2^ENSG00000170324.21" ; gene_name FRMPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018171.7" ; havana_transcript "OTTHUMT00000277029.1" ; hgnc_id "HGNC:28572" ; level 2 ; orig_coord_info "chr10,48251566,48251710,-" ; protein_id "ENSP00000307079.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "AGAP12P--FRMPD2^ENST00000305531.3" ; transcript_name "FRMPD2-201" ; transcript_support_level 5 ; transcript_type protein_coding
AGAP12P--FRMPD2 HAVANA mRNA 13554 48555 . + . FI_gene_label "FRMPD2^ENSG00000170324.21" ; ID "AGAP12P--FRMPD2^ENST00000305531.3" ; Parent "AGAP12P--FRMPD2^FRMPD2^ENSG00000170324.21" ; ccdsid "CCDS81460.1" ; exon_id "ENSE00001390154.1" ; exon_number 1 ; gene_id "AGAP12P--FRMPD2^FRMPD2^ENSG00000170324.21" ; gene_name FRMPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018171.7" ; havana_transcript "OTTHUMT00000277029.1" ; hgnc_id "HGNC:28572" ; level 2 ; orig_coord_info "chr10,48251566,48251710,-" ; protein_id "ENSP00000307079.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "AGAP12P--FRMPD2^ENST00000305531.3" ; transcript_name "FRMPD2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AL512590.2--CCDC180 HAVANA gene 14599 56298 . + . FI_gene_label "CCDC180^ENSG00000197816.16" ; ID "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; exon_id "ENSE00003898006.1" ; exon_number 2 ; gene_id "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; gene_name CCDC180 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167001.3" ; havana_transcript "OTTHUMT00000383515.4" ; hgnc_id "HGNC:29303" ; level 2 ; orig_coord_info "chr9,97308064,97308132,+" ; protein_id "ENSP00000434727.2" ; tag basic MANE_Select appris_principal_1 ; transcript_id "AL512590.2--CCDC180^ENST00000529487.3" ; transcript_name "CCDC180-210" ; transcript_support_level 1 ; transcript_type protein_coding
AL512590.2--CCDC180 HAVANA mRNA 14599 56298 . + . FI_gene_label "CCDC180^ENSG00000197816.16" ; ID "AL512590.2--CCDC180^ENST00000529487.3" ; Parent "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; exon_id "ENSE00003898006.1" ; exon_number 2 ; gene_id "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; gene_name CCDC180 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167001.3" ; havana_transcript "OTTHUMT00000383515.4" ; hgnc_id "HGNC:29303" ; level 2 ; orig_coord_info "chr9,97308064,97308132,+" ; protein_id "ENSP00000434727.2" ; tag basic MANE_Select appris_principal_1 ; transcript_id "AL512590.2--CCDC180^ENST00000529487.3" ; transcript_name "CCDC180-210" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASTN2--AL138749.1 HAVANA gene 19238 33668 . + . FI_gene_label "ASTN2^ENSG00000148219.18" ; ID "ASTN2--AL138749.1^ASTN2^ENSG00000148219.18" ; ccdsid "CCDS48009.2" ; exon_id "ENSE00001518668.2" ; exon_number 1 ; gene_id "ASTN2--AL138749.1^ASTN2^ENSG00000148219.18" ; gene_name ASTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021013.2" ; havana_transcript "OTTHUMT00000055429.1" ; hgnc_id "HGNC:17021" ; level 2 ; orig_coord_info "chr9,116686697,116686805,-" ; protein_id "ENSP00000288520.5" ; tag basic CCDS ; transcript_id "ASTN2--AL138749.1^ENST00000288520.9" ; transcript_name "ASTN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASTN2--AL138749.1 HAVANA mRNA 19238 33668 . + . FI_gene_label "ASTN2^ENSG00000148219.18" ; ID "ASTN2--AL138749.1^ENST00000288520.9" ; Parent "ASTN2--AL138749.1^ASTN2^ENSG00000148219.18" ; ccdsid "CCDS48009.2" ; exon_id "ENSE00001518668.2" ; exon_number 1 ; gene_id "ASTN2--AL138749.1^ASTN2^ENSG00000148219.18" ; gene_name ASTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021013.2" ; havana_transcript "OTTHUMT00000055429.1" ; hgnc_id "HGNC:17021" ; level 2 ; orig_coord_info "chr9,116686697,116686805,-" ; protein_id "ENSP00000288520.5" ; tag basic CCDS ; transcript_id "ASTN2--AL138749.1^ENST00000288520.9" ; transcript_name "ASTN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASTN2--RPS20P25 HAVANA gene 19238 33668 . + . FI_gene_label "ASTN2^ENSG00000148219.18" ; ID "ASTN2--RPS20P25^ASTN2^ENSG00000148219.18" ; ccdsid "CCDS48009.2" ; exon_id "ENSE00001518668.2" ; exon_number 1 ; gene_id "ASTN2--RPS20P25^ASTN2^ENSG00000148219.18" ; gene_name ASTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021013.2" ; havana_transcript "OTTHUMT00000055429.1" ; hgnc_id "HGNC:17021" ; level 2 ; orig_coord_info "chr9,116686697,116686805,-" ; protein_id "ENSP00000288520.5" ; tag basic CCDS ; transcript_id "ASTN2--RPS20P25^ENST00000288520.9" ; transcript_name "ASTN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASTN2--RPS20P25 HAVANA mRNA 19238 33668 . + . FI_gene_label "ASTN2^ENSG00000148219.18" ; ID "ASTN2--RPS20P25^ENST00000288520.9" ; Parent "ASTN2--RPS20P25^ASTN2^ENSG00000148219.18" ; ccdsid "CCDS48009.2" ; exon_id "ENSE00001518668.2" ; exon_number 1 ; gene_id "ASTN2--RPS20P25^ASTN2^ENSG00000148219.18" ; gene_name ASTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021013.2" ; havana_transcript "OTTHUMT00000055429.1" ; hgnc_id "HGNC:17021" ; level 2 ; orig_coord_info "chr9,116686697,116686805,-" ; protein_id "ENSP00000288520.5" ; tag basic CCDS ; transcript_id "ASTN2--RPS20P25^ENST00000288520.9" ; transcript_name "ASTN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^ENST00000239859.8" ; Parent "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^ENST00000317764.6" ; Parent "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHRDL2--P4HA3-AS1 HAVANA gene 1252 14505 . + . FI_gene_label "CHRDL2^ENSG00000054938.16" ; ID "CHRDL2--P4HA3-AS1^CHRDL2^ENSG00000054938.16" ; ccdsid "CCDS8234.1" ; exon_id "ENSE00002182094.1" ; exon_number 1 ; gene_id "CHRDL2--P4HA3-AS1^CHRDL2^ENSG00000054938.16" ; gene_name CHRDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165623.1" ; havana_transcript "OTTHUMT00000385390.1" ; hgnc_id "HGNC:24168" ; level 2 ; orig_coord_info "chr11,74730807,74730888,-" ; protein_id "ENSP00000263671.5" ; tag basic CCDS ; transcript_id "CHRDL2--P4HA3-AS1^ENST00000263671.9" ; transcript_name "CHRDL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CHRDL2--P4HA3-AS1 HAVANA mRNA 1252 14505 . + . FI_gene_label "CHRDL2^ENSG00000054938.16" ; ID "CHRDL2--P4HA3-AS1^ENST00000263671.9" ; Parent "CHRDL2--P4HA3-AS1^CHRDL2^ENSG00000054938.16" ; ccdsid "CCDS8234.1" ; exon_id "ENSE00002182094.1" ; exon_number 1 ; gene_id "CHRDL2--P4HA3-AS1^CHRDL2^ENSG00000054938.16" ; gene_name CHRDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165623.1" ; havana_transcript "OTTHUMT00000385390.1" ; hgnc_id "HGNC:24168" ; level 2 ; orig_coord_info "chr11,74730807,74730888,-" ; protein_id "ENSP00000263671.5" ; tag basic CCDS ; transcript_id "CHRDL2--P4HA3-AS1^ENST00000263671.9" ; transcript_name "CHRDL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COL1A1--SLC45A4 HAVANA gene 25435 34927 . + . FI_gene_label "SLC45A4^ENSG00000022567.10" ; ID "COL1A1--SLC45A4^SLC45A4^ENSG00000022567.10" ; ccdsid "CCDS34948.1" ; exon_id "ENSE00001475008.1" ; exon_number 1 ; gene_id "COL1A1--SLC45A4^SLC45A4^ENSG00000022567.10" ; gene_name SLC45A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164393.4" ; havana_transcript "OTTHUMT00000378571.3" ; hgnc_id "HGNC:29196" ; level 2 ; orig_coord_info "chr8,141228179,141228266,-" ; protein_id "ENSP00000024061.3" ; tag basic appris_principal_1 CCDS ; transcript_id "COL1A1--SLC45A4^ENST00000024061.7" ; transcript_name "SLC45A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
COL1A1--SLC45A4 HAVANA mRNA 25435 34927 . + . FI_gene_label "SLC45A4^ENSG00000022567.10" ; ID "COL1A1--SLC45A4^ENST00000024061.7" ; Parent "COL1A1--SLC45A4^SLC45A4^ENSG00000022567.10" ; ccdsid "CCDS34948.1" ; exon_id "ENSE00001475008.1" ; exon_number 1 ; gene_id "COL1A1--SLC45A4^SLC45A4^ENSG00000022567.10" ; gene_name SLC45A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164393.4" ; havana_transcript "OTTHUMT00000378571.3" ; hgnc_id "HGNC:29196" ; level 2 ; orig_coord_info "chr8,141228179,141228266,-" ; protein_id "ENSP00000024061.3" ; tag basic appris_principal_1 CCDS ; transcript_id "COL1A1--SLC45A4^ENST00000024061.7" ; transcript_name "SLC45A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COL1A1--SLC45A4 HAVANA gene 1002 18313 . + . FI_gene_label "COL1A1^ENSG00000108821.14" ; ID "COL1A1--SLC45A4^COL1A1^ENSG00000108821.14" ; ccdsid "CCDS11561.1" ; exon_id "ENSE00003500023.2" ; exon_number 1 ; gene_id "COL1A1--SLC45A4^COL1A1^ENSG00000108821.14" ; gene_name COL1A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000148674.9" ; havana_transcript "OTTHUMT00000309036.3" ; hgnc_id "HGNC:2197" ; level 2 ; orig_coord_info "chr17,50201411,50201513,-" ; protein_id "ENSP00000225964.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COL1A1--SLC45A4^ENST00000225964.10" ; transcript_name "COL1A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
COL1A1--SLC45A4 HAVANA mRNA 1002 18313 . + . FI_gene_label "COL1A1^ENSG00000108821.14" ; ID "COL1A1--SLC45A4^ENST00000225964.10" ; Parent "COL1A1--SLC45A4^COL1A1^ENSG00000108821.14" ; ccdsid "CCDS11561.1" ; exon_id "ENSE00003500023.2" ; exon_number 1 ; gene_id "COL1A1--SLC45A4^COL1A1^ENSG00000108821.14" ; gene_name COL1A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000148674.9" ; havana_transcript "OTTHUMT00000309036.3" ; hgnc_id "HGNC:2197" ; level 2 ; orig_coord_info "chr17,50201411,50201513,-" ; protein_id "ENSP00000225964.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COL1A1--SLC45A4^ENST00000225964.10" ; transcript_name "COL1A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRYZL2P--SEC16B HAVANA mRNA 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^ENST00000308284.10" ; Parent "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FAM168A--ASIC2 HAVANA gene 1001 18260 . + . FI_gene_label "FAM168A^ENSG00000054965.11" ; ID "FAM168A--ASIC2^FAM168A^ENSG00000054965.11" ; ccdsid "CCDS73346.1" ; exon_id "ENSE00003483884.1" ; exon_number 2 ; gene_id "FAM168A--ASIC2^FAM168A^ENSG00000054965.11" ; gene_name FAM168A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167995.2" ; havana_transcript "OTTHUMT00000397424.1" ; hgnc_id "HGNC:28999" ; level 2 ; orig_coord_info "chr11,73468405,73468474,-" ; protein_id "ENSP00000064778.4" ; tag basic CCDS ; transcript_id "FAM168A--ASIC2^ENST00000064778.8" ; transcript_name "FAM168A-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM168A--ASIC2 HAVANA mRNA 1001 18260 . + . FI_gene_label "FAM168A^ENSG00000054965.11" ; ID "FAM168A--ASIC2^ENST00000064778.8" ; Parent "FAM168A--ASIC2^FAM168A^ENSG00000054965.11" ; ccdsid "CCDS73346.1" ; exon_id "ENSE00003483884.1" ; exon_number 2 ; gene_id "FAM168A--ASIC2^FAM168A^ENSG00000054965.11" ; gene_name FAM168A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167995.2" ; havana_transcript "OTTHUMT00000397424.1" ; hgnc_id "HGNC:28999" ; level 2 ; orig_coord_info "chr11,73468405,73468474,-" ; protein_id "ENSP00000064778.4" ; tag basic CCDS ; transcript_id "FAM168A--ASIC2^ENST00000064778.8" ; transcript_name "FAM168A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FAM168A--ASIC2 HAVANA gene 24983 38464 . + . FI_gene_label "ASIC2^ENSG00000108684.15" ; ID "FAM168A--ASIC2^ASIC2^ENSG00000108684.15" ; ccdsid "CCDS11276.1" ; exon_id "ENSE00001248823.4" ; exon_number 1 ; gene_id "FAM168A--ASIC2^ASIC2^ENSG00000108684.15" ; gene_name ASIC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132885.4" ; havana_transcript "OTTHUMT00000256378.1" ; hgnc_id "HGNC:99" ; level 2 ; orig_coord_info "chr17,33291408,33292115,-" ; protein_id "ENSP00000225823.2" ; tag basic MANE_Select CCDS ; transcript_id "FAM168A--ASIC2^ENST00000225823.7" ; transcript_name "ASIC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM168A--ASIC2 HAVANA mRNA 24983 38464 . + . FI_gene_label "ASIC2^ENSG00000108684.15" ; ID "FAM168A--ASIC2^ENST00000225823.7" ; Parent "FAM168A--ASIC2^ASIC2^ENSG00000108684.15" ; ccdsid "CCDS11276.1" ; exon_id "ENSE00001248823.4" ; exon_number 1 ; gene_id "FAM168A--ASIC2^ASIC2^ENSG00000108684.15" ; gene_name ASIC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132885.4" ; havana_transcript "OTTHUMT00000256378.1" ; hgnc_id "HGNC:99" ; level 2 ; orig_coord_info "chr17,33291408,33292115,-" ; protein_id "ENSP00000225823.2" ; tag basic MANE_Select CCDS ; transcript_id "FAM168A--ASIC2^ENST00000225823.7" ; transcript_name "ASIC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GUSB--NAIP ENSEMBL gene 16697 37876 . + . FI_gene_label "NAIP^ENSG00000249437.8" ; ID "GUSB--NAIP^NAIP^ENSG00000249437.8" ; ccdsid "CCDS4009.1" ; exon_id "ENSE00002284906.1" ; exon_number 2 ; gene_id "GUSB--NAIP^NAIP^ENSG00000249437.8" ; gene_name NAIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163318.7" ; hgnc_id "HGNC:7634" ; level 3 ; orig_coord_info "chr5,71012348,71012915,-" ; protein_id "ENSP00000443944.1" ; tag basic appris_principal_2 CCDS ; transcript_id "GUSB--NAIP^ENST00000194097.8" ; transcript_name "NAIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
GUSB--NAIP ENSEMBL mRNA 16697 37876 . + . FI_gene_label "NAIP^ENSG00000249437.8" ; ID "GUSB--NAIP^ENST00000194097.8" ; Parent "GUSB--NAIP^NAIP^ENSG00000249437.8" ; ccdsid "CCDS4009.1" ; exon_id "ENSE00002284906.1" ; exon_number 2 ; gene_id "GUSB--NAIP^NAIP^ENSG00000249437.8" ; gene_name NAIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163318.7" ; hgnc_id "HGNC:7634" ; level 3 ; orig_coord_info "chr5,71012348,71012915,-" ; protein_id "ENSP00000443944.1" ; tag basic appris_principal_2 CCDS ; transcript_id "GUSB--NAIP^ENST00000194097.8" ; transcript_name "NAIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GUSB--NAIP HAVANA gene 1003 11674 . + . FI_gene_label "GUSB^ENSG00000169919.17" ; ID "GUSB--NAIP^GUSB^ENSG00000169919.17" ; ccdsid "CCDS5530.1" ; exon_id "ENSE00001554367.1" ; exon_number 1 ; gene_id "GUSB--NAIP^GUSB^ENSG00000169919.17" ; gene_name GUSB ; gene_type protein_coding ; havana_gene "OTTHUMG00000023735.5" ; havana_transcript "OTTHUMT00000251637.4" ; hgnc_id "HGNC:4696" ; level 2 ; orig_coord_info "chr7,65981974,65982183,-" ; protein_id "ENSP00000302728.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GUSB--NAIP^ENST00000304895.9" ; transcript_name "GUSB-201" ; transcript_support_level 1 ; transcript_type protein_coding
GUSB--NAIP HAVANA mRNA 1003 11674 . + . FI_gene_label "GUSB^ENSG00000169919.17" ; ID "GUSB--NAIP^ENST00000304895.9" ; Parent "GUSB--NAIP^GUSB^ENSG00000169919.17" ; ccdsid "CCDS5530.1" ; exon_id "ENSE00001554367.1" ; exon_number 1 ; gene_id "GUSB--NAIP^GUSB^ENSG00000169919.17" ; gene_name GUSB ; gene_type protein_coding ; havana_gene "OTTHUMG00000023735.5" ; havana_transcript "OTTHUMT00000251637.4" ; hgnc_id "HGNC:4696" ; level 2 ; orig_coord_info "chr7,65981974,65982183,-" ; protein_id "ENSP00000302728.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GUSB--NAIP^ENST00000304895.9" ; transcript_name "GUSB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRRC55--MS4A4A HAVANA gene 14298 26867 . + . FI_gene_label "MS4A4A^ENSG00000110079.19" ; ID "LRRC55--MS4A4A^MS4A4A^ENSG00000110079.19" ; ccdsid "CCDS7982.1" ; exon_id "ENSE00003850038.1" ; exon_number 1 ; gene_id "LRRC55--MS4A4A^MS4A4A^ENSG00000110079.19" ; gene_name MS4A4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000154949.5" ; havana_transcript "OTTHUMT00000337774.3" ; hgnc_id "HGNC:13371" ; level 2 ; orig_coord_info "chr11,60280676,60280716,+" ; protein_id "ENSP00000338648.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "LRRC55--MS4A4A^ENST00000337908.5" ; transcript_name "MS4A4A-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRRC55--MS4A4A HAVANA mRNA 14298 26867 . + . FI_gene_label "MS4A4A^ENSG00000110079.19" ; ID "LRRC55--MS4A4A^ENST00000337908.5" ; Parent "LRRC55--MS4A4A^MS4A4A^ENSG00000110079.19" ; ccdsid "CCDS7982.1" ; exon_id "ENSE00003850038.1" ; exon_number 1 ; gene_id "LRRC55--MS4A4A^MS4A4A^ENSG00000110079.19" ; gene_name MS4A4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000154949.5" ; havana_transcript "OTTHUMT00000337774.3" ; hgnc_id "HGNC:13371" ; level 2 ; orig_coord_info "chr11,60280676,60280716,+" ; protein_id "ENSP00000338648.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "LRRC55--MS4A4A^ENST00000337908.5" ; transcript_name "MS4A4A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRRC55--MS4A4A HAVANA gene 1207 7410 . + . FI_gene_label "LRRC55^ENSG00000183908.7" ; ID "LRRC55--MS4A4A^LRRC55^ENSG00000183908.7" ; exon_id "ENSE00003894871.1" ; exon_number 1 ; gene_id "LRRC55--MS4A4A^LRRC55^ENSG00000183908.7" ; gene_name LRRC55 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159309.4" ; havana_transcript "OTTHUMT00000354503.4" ; hgnc_id "HGNC:32324" ; level 2 ; orig_coord_info "chr11,57182023,57182683,+" ; protein_id "ENSP00000419542.2" ; tag basic MANE_Select appris_alternative_2 ; transcript_id "LRRC55--MS4A4A^ENST00000497933.3" ; transcript_name "LRRC55-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRRC55--MS4A4A HAVANA mRNA 1207 7410 . + . FI_gene_label "LRRC55^ENSG00000183908.7" ; ID "LRRC55--MS4A4A^ENST00000497933.3" ; Parent "LRRC55--MS4A4A^LRRC55^ENSG00000183908.7" ; exon_id "ENSE00003894871.1" ; exon_number 1 ; gene_id "LRRC55--MS4A4A^LRRC55^ENSG00000183908.7" ; gene_name LRRC55 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159309.4" ; havana_transcript "OTTHUMT00000354503.4" ; hgnc_id "HGNC:32324" ; level 2 ; orig_coord_info "chr11,57182023,57182683,+" ; protein_id "ENSP00000419542.2" ; tag basic MANE_Select appris_alternative_2 ; transcript_id "LRRC55--MS4A4A^ENST00000497933.3" ; transcript_name "LRRC55-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRRC55--MS4A4E ENSEMBL gene 11607 16214 . + . FI_gene_label "MS4A4E^ENSG00000214787.10" ; ID "LRRC55--MS4A4E^MS4A4E^ENSG00000214787.10" ; exon_id "ENSE00001709274.1" ; exon_number 1 ; gene_id "LRRC55--MS4A4E^MS4A4E^ENSG00000214787.10" ; gene_name MS4A4E ; gene_type protein_coding ; havana_gene "OTTHUMG00000167354.4" ; hgnc_id "HGNC:14284" ; level 3 ; orig_coord_info "chr11,60229912,60230055,-" ; protein_id "ENSP00000381954.2" ; tag basic ; transcript_id "LRRC55--MS4A4E^ENST00000398984.6" ; transcript_name "MS4A4E-201" ; transcript_support_level 5 ; transcript_type protein_coding
LRRC55--MS4A4E ENSEMBL mRNA 11607 16214 . + . FI_gene_label "MS4A4E^ENSG00000214787.10" ; ID "LRRC55--MS4A4E^ENST00000398984.6" ; Parent "LRRC55--MS4A4E^MS4A4E^ENSG00000214787.10" ; exon_id "ENSE00001709274.1" ; exon_number 1 ; gene_id "LRRC55--MS4A4E^MS4A4E^ENSG00000214787.10" ; gene_name MS4A4E ; gene_type protein_coding ; havana_gene "OTTHUMG00000167354.4" ; hgnc_id "HGNC:14284" ; level 3 ; orig_coord_info "chr11,60229912,60230055,-" ; protein_id "ENSP00000381954.2" ; tag basic ; transcript_id "LRRC55--MS4A4E^ENST00000398984.6" ; transcript_name "MS4A4E-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
LRRC55--MS4A4E HAVANA gene 1207 7410 . + . FI_gene_label "LRRC55^ENSG00000183908.7" ; ID "LRRC55--MS4A4E^LRRC55^ENSG00000183908.7" ; exon_id "ENSE00003894871.1" ; exon_number 1 ; gene_id "LRRC55--MS4A4E^LRRC55^ENSG00000183908.7" ; gene_name LRRC55 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159309.4" ; havana_transcript "OTTHUMT00000354503.4" ; hgnc_id "HGNC:32324" ; level 2 ; orig_coord_info "chr11,57182023,57182683,+" ; protein_id "ENSP00000419542.2" ; tag basic MANE_Select appris_alternative_2 ; transcript_id "LRRC55--MS4A4E^ENST00000497933.3" ; transcript_name "LRRC55-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRRC55--MS4A4E HAVANA mRNA 1207 7410 . + . FI_gene_label "LRRC55^ENSG00000183908.7" ; ID "LRRC55--MS4A4E^ENST00000497933.3" ; Parent "LRRC55--MS4A4E^LRRC55^ENSG00000183908.7" ; exon_id "ENSE00003894871.1" ; exon_number 1 ; gene_id "LRRC55--MS4A4E^LRRC55^ENSG00000183908.7" ; gene_name LRRC55 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159309.4" ; havana_transcript "OTTHUMT00000354503.4" ; hgnc_id "HGNC:32324" ; level 2 ; orig_coord_info "chr11,57182023,57182683,+" ; protein_id "ENSP00000419542.2" ; tag basic MANE_Select appris_alternative_2 ; transcript_id "LRRC55--MS4A4E^ENST00000497933.3" ; transcript_name "LRRC55-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PGM2L1--MOGAT2 HAVANA gene 23367 30811 . + . FI_gene_label "MOGAT2^ENSG00000166391.15" ; ID "PGM2L1--MOGAT2^MOGAT2^ENSG00000166391.15" ; ccdsid "CCDS8240.1" ; exon_id "ENSE00000797618.5" ; exon_number 1 ; gene_id "PGM2L1--MOGAT2^MOGAT2^ENSG00000166391.15" ; gene_name MOGAT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165341.2" ; havana_transcript "OTTHUMT00000383520.2" ; hgnc_id "HGNC:23248" ; level 2 ; orig_coord_info "chr11,75717889,75717979,+" ; protein_id "ENSP00000198801.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGM2L1--MOGAT2^ENST00000198801.10" ; transcript_name "MOGAT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PGM2L1--MOGAT2 HAVANA mRNA 23367 30811 . + . FI_gene_label "MOGAT2^ENSG00000166391.15" ; ID "PGM2L1--MOGAT2^ENST00000198801.10" ; Parent "PGM2L1--MOGAT2^MOGAT2^ENSG00000166391.15" ; ccdsid "CCDS8240.1" ; exon_id "ENSE00000797618.5" ; exon_number 1 ; gene_id "PGM2L1--MOGAT2^MOGAT2^ENSG00000166391.15" ; gene_name MOGAT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165341.2" ; havana_transcript "OTTHUMT00000383520.2" ; hgnc_id "HGNC:23248" ; level 2 ; orig_coord_info "chr11,75717889,75717979,+" ; protein_id "ENSP00000198801.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGM2L1--MOGAT2^ENST00000198801.10" ; transcript_name "MOGAT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PGM2L1--MOGAT2 HAVANA gene 1001 20366 . + . FI_gene_label "PGM2L1^ENSG00000165434.8" ; ID "PGM2L1--MOGAT2^PGM2L1^ENSG00000165434.8" ; ccdsid "CCDS8231.1" ; exon_id "ENSE00001093079.9" ; exon_number 1 ; gene_id "PGM2L1--MOGAT2^PGM2L1^ENSG00000165434.8" ; gene_name PGM2L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168132.2" ; havana_transcript "OTTHUMT00000398324.2" ; hgnc_id "HGNC:20898" ; level 2 ; orig_coord_info "chr11,74398051,74398161,-" ; protein_id "ENSP00000298198.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGM2L1--MOGAT2^ENST00000298198.5" ; transcript_name "PGM2L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PGM2L1--MOGAT2 HAVANA mRNA 1001 20366 . + . FI_gene_label "PGM2L1^ENSG00000165434.8" ; ID "PGM2L1--MOGAT2^ENST00000298198.5" ; Parent "PGM2L1--MOGAT2^PGM2L1^ENSG00000165434.8" ; ccdsid "CCDS8231.1" ; exon_id "ENSE00001093079.9" ; exon_number 1 ; gene_id "PGM2L1--MOGAT2^PGM2L1^ENSG00000165434.8" ; gene_name PGM2L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168132.2" ; havana_transcript "OTTHUMT00000398324.2" ; hgnc_id "HGNC:20898" ; level 2 ; orig_coord_info "chr11,74398051,74398161,-" ; protein_id "ENSP00000298198.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGM2L1--MOGAT2^ENST00000298198.5" ; transcript_name "PGM2L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PMS2P5--CCDC146 HAVANA gene 6874 27241 . + . FI_gene_label "CCDC146^ENSG00000135205.15" ; ID "PMS2P5--CCDC146^CCDC146^ENSG00000135205.15" ; ccdsid "CCDS34671.1" ; exon_id "ENSE00003536120.1" ; exon_number 2 ; gene_id "PMS2P5--CCDC146^CCDC146^ENSG00000135205.15" ; gene_name CCDC146 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162595.3" ; havana_transcript "OTTHUMT00000341449.2" ; hgnc_id "HGNC:29296" ; level 2 ; orig_coord_info "chr7,77167669,77167824,+" ; protein_id "ENSP00000285871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PMS2P5--CCDC146^ENST00000285871.5" ; transcript_name "CCDC146-201" ; transcript_support_level 1 ; transcript_type protein_coding
PMS2P5--CCDC146 HAVANA mRNA 6874 27241 . + . FI_gene_label "CCDC146^ENSG00000135205.15" ; ID "PMS2P5--CCDC146^ENST00000285871.5" ; Parent "PMS2P5--CCDC146^CCDC146^ENSG00000135205.15" ; ccdsid "CCDS34671.1" ; exon_id "ENSE00003536120.1" ; exon_number 2 ; gene_id "PMS2P5--CCDC146^CCDC146^ENSG00000135205.15" ; gene_name CCDC146 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162595.3" ; havana_transcript "OTTHUMT00000341449.2" ; hgnc_id "HGNC:29296" ; level 2 ; orig_coord_info "chr7,77167669,77167824,+" ; protein_id "ENSP00000285871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PMS2P5--CCDC146^ENST00000285871.5" ; transcript_name "CCDC146-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM4--MS4A6E HAVANA gene 16073 20954 . + . FI_gene_label "MS4A6E^ENSG00000166926.8" ; ID "RBM4--MS4A6E^MS4A6E^ENSG00000166926.8" ; ccdsid "CCDS7984.1" ; exon_id "ENSE00001107844.4" ; exon_number 1 ; gene_id "RBM4--MS4A6E^MS4A6E^ENSG00000166926.8" ; gene_name MS4A6E ; gene_type protein_coding ; havana_gene "OTTHUMG00000167355.1" ; havana_transcript "OTTHUMT00000394296.1" ; hgnc_id "HGNC:14285" ; level 2 ; orig_coord_info "chr11,60334896,60335042,+" ; protein_id "ENSP00000300182.4" ; tag basic appris_principal_1 CCDS ; transcript_id "RBM4--MS4A6E^ENST00000300182.8" ; transcript_name "MS4A6E-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM4--MS4A6E HAVANA mRNA 16073 20954 . + . FI_gene_label "MS4A6E^ENSG00000166926.8" ; ID "RBM4--MS4A6E^ENST00000300182.8" ; Parent "RBM4--MS4A6E^MS4A6E^ENSG00000166926.8" ; ccdsid "CCDS7984.1" ; exon_id "ENSE00001107844.4" ; exon_number 1 ; gene_id "RBM4--MS4A6E^MS4A6E^ENSG00000166926.8" ; gene_name MS4A6E ; gene_type protein_coding ; havana_gene "OTTHUMG00000167355.1" ; havana_transcript "OTTHUMT00000394296.1" ; hgnc_id "HGNC:14285" ; level 2 ; orig_coord_info "chr11,60334896,60335042,+" ; protein_id "ENSP00000300182.4" ; tag basic appris_principal_1 CCDS ; transcript_id "RBM4--MS4A6E^ENST00000300182.8" ; transcript_name "MS4A6E-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM4--MS4A6E HAVANA gene 1037 7262 . + . FI_gene_label "RBM4^ENSG00000173933.21" ; ID "RBM4--MS4A6E^RBM4^ENSG00000173933.21" ; ccdsid "CCDS41676.1" ; exon_id "ENSE00003513724.1" ; exon_number 2 ; gene_id "RBM4--MS4A6E^RBM4^ENSG00000173933.21" ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7" ; havana_transcript "OTTHUMT00000334210.2" ; hgnc_id "HGNC:9901" ; level 2 ; orig_coord_info "chr11,66639712,66640123,+" ; protein_id "ENSP00000309166.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM4--MS4A6E^ENST00000310092.12" ; transcript_name "RBM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM4--MS4A6E HAVANA mRNA 1037 7262 . + . FI_gene_label "RBM4^ENSG00000173933.21" ; ID "RBM4--MS4A6E^ENST00000310092.12" ; Parent "RBM4--MS4A6E^RBM4^ENSG00000173933.21" ; ccdsid "CCDS41676.1" ; exon_id "ENSE00003513724.1" ; exon_number 2 ; gene_id "RBM4--MS4A6E^RBM4^ENSG00000173933.21" ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7" ; havana_transcript "OTTHUMT00000334210.2" ; hgnc_id "HGNC:9901" ; level 2 ; orig_coord_info "chr11,66639712,66640123,+" ; protein_id "ENSP00000309166.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM4--MS4A6E^ENST00000310092.12" ; transcript_name "RBM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF169--SLCO2B1 HAVANA gene 17952 40032 . + . FI_gene_label "SLCO2B1^ENSG00000137491.15" ; ID "RNF169--SLCO2B1^SLCO2B1^ENSG00000137491.15" ; ccdsid "CCDS8235.1" ; exon_id "ENSE00002177754.2" ; exon_number 1 ; gene_id "RNF169--SLCO2B1^SLCO2B1^ENSG00000137491.15" ; gene_name SLCO2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165420.5" ; havana_transcript "OTTHUMT00000383933.3" ; hgnc_id "HGNC:10962" ; level 2 ; orig_coord_info "chr11,75151382,75151397,+" ; protein_id "ENSP00000289575.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RNF169--SLCO2B1^ENST00000289575.10" ; transcript_name "SLCO2B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF169--SLCO2B1 HAVANA mRNA 17952 40032 . + . FI_gene_label "SLCO2B1^ENSG00000137491.15" ; ID "RNF169--SLCO2B1^ENST00000289575.10" ; Parent "RNF169--SLCO2B1^SLCO2B1^ENSG00000137491.15" ; ccdsid "CCDS8235.1" ; exon_id "ENSE00002177754.2" ; exon_number 1 ; gene_id "RNF169--SLCO2B1^SLCO2B1^ENSG00000137491.15" ; gene_name SLCO2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165420.5" ; havana_transcript "OTTHUMT00000383933.3" ; hgnc_id "HGNC:10962" ; level 2 ; orig_coord_info "chr11,75151382,75151397,+" ; protein_id "ENSP00000289575.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RNF169--SLCO2B1^ENST00000289575.10" ; transcript_name "SLCO2B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF169--SLCO2B1 HAVANA gene 1001 13612 . + . FI_gene_label "RNF169^ENSG00000166439.6" ; ID "RNF169--SLCO2B1^RNF169^ENSG00000166439.6" ; ccdsid "CCDS41691.1" ; exon_id "ENSE00001243156.4" ; exon_number 1 ; gene_id "RNF169--SLCO2B1^RNF169^ENSG00000166439.6" ; gene_name RNF169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165516.3" ; havana_transcript "OTTHUMT00000384741.2" ; hgnc_id "HGNC:26961" ; level 2 ; orig_coord_info "chr11,74748881,74749382,+" ; protein_id "ENSP00000299563.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF169--SLCO2B1^ENST00000299563.5" ; transcript_name "RNF169-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF169--SLCO2B1 HAVANA mRNA 1001 13612 . + . FI_gene_label "RNF169^ENSG00000166439.6" ; ID "RNF169--SLCO2B1^ENST00000299563.5" ; Parent "RNF169--SLCO2B1^RNF169^ENSG00000166439.6" ; ccdsid "CCDS41691.1" ; exon_id "ENSE00001243156.4" ; exon_number 1 ; gene_id "RNF169--SLCO2B1^RNF169^ENSG00000166439.6" ; gene_name RNF169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165516.3" ; havana_transcript "OTTHUMT00000384741.2" ; hgnc_id "HGNC:26961" ; level 2 ; orig_coord_info "chr11,74748881,74749382,+" ; protein_id "ENSP00000299563.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF169--SLCO2B1^ENST00000299563.5" ; transcript_name "RNF169-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SHANK2--AP000439.2 HAVANA gene 33938 57363 . + . FI_gene_label "SHANK2^ENSG00000162105.20" ; ID "SHANK2--AP000439.2^SHANK2^ENSG00000162105.20" ; ccdsid "CCDS76448.1" ; exon_id "ENSE00001714763.2" ; exon_number 1 ; gene_id "SHANK2--AP000439.2^SHANK2^ENSG00000162105.20" ; gene_name SHANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154615.9" ; havana_transcript "OTTHUMT00000477858.2" ; hgnc_id "HGNC:14295" ; level 2 ; orig_coord_info "chr11,70661596,70661767,-" ; protein_id "ENSP00000345193.6" ; tag basic CCDS ; transcript_id "SHANK2--AP000439.2^ENST00000338508.8" ; transcript_name "SHANK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
SHANK2--AP000439.2 HAVANA mRNA 33938 57363 . + . FI_gene_label "SHANK2^ENSG00000162105.20" ; ID "SHANK2--AP000439.2^ENST00000338508.8" ; Parent "SHANK2--AP000439.2^SHANK2^ENSG00000162105.20" ; ccdsid "CCDS76448.1" ; exon_id "ENSE00001714763.2" ; exon_number 1 ; gene_id "SHANK2--AP000439.2^SHANK2^ENSG00000162105.20" ; gene_name SHANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154615.9" ; havana_transcript "OTTHUMT00000477858.2" ; hgnc_id "HGNC:14295" ; level 2 ; orig_coord_info "chr11,70661596,70661767,-" ; protein_id "ENSP00000345193.6" ; tag basic CCDS ; transcript_id "SHANK2--AP000439.2^ENST00000338508.8" ; transcript_name "SHANK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SLCO2B1--RNF169 HAVANA gene 2340 24420 . + . FI_gene_label "SLCO2B1^ENSG00000137491.15" ; ID "SLCO2B1--RNF169^SLCO2B1^ENSG00000137491.15" ; ccdsid "CCDS8235.1" ; exon_id "ENSE00002177754.2" ; exon_number 1 ; gene_id "SLCO2B1--RNF169^SLCO2B1^ENSG00000137491.15" ; gene_name SLCO2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165420.5" ; havana_transcript "OTTHUMT00000383933.3" ; hgnc_id "HGNC:10962" ; level 2 ; orig_coord_info "chr11,75151382,75151397,+" ; protein_id "ENSP00000289575.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SLCO2B1--RNF169^ENST00000289575.10" ; transcript_name "SLCO2B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLCO2B1--RNF169 HAVANA mRNA 2340 24420 . + . FI_gene_label "SLCO2B1^ENSG00000137491.15" ; ID "SLCO2B1--RNF169^ENST00000289575.10" ; Parent "SLCO2B1--RNF169^SLCO2B1^ENSG00000137491.15" ; ccdsid "CCDS8235.1" ; exon_id "ENSE00002177754.2" ; exon_number 1 ; gene_id "SLCO2B1--RNF169^SLCO2B1^ENSG00000137491.15" ; gene_name SLCO2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165420.5" ; havana_transcript "OTTHUMT00000383933.3" ; hgnc_id "HGNC:10962" ; level 2 ; orig_coord_info "chr11,75151382,75151397,+" ; protein_id "ENSP00000289575.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SLCO2B1--RNF169^ENST00000289575.10" ; transcript_name "SLCO2B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLCO2B1--RNF169 HAVANA gene 27421 40032 . + . FI_gene_label "RNF169^ENSG00000166439.6" ; ID "SLCO2B1--RNF169^RNF169^ENSG00000166439.6" ; ccdsid "CCDS41691.1" ; exon_id "ENSE00001243156.4" ; exon_number 1 ; gene_id "SLCO2B1--RNF169^RNF169^ENSG00000166439.6" ; gene_name RNF169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165516.3" ; havana_transcript "OTTHUMT00000384741.2" ; hgnc_id "HGNC:26961" ; level 2 ; orig_coord_info "chr11,74748881,74749382,+" ; protein_id "ENSP00000299563.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLCO2B1--RNF169^ENST00000299563.5" ; transcript_name "RNF169-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLCO2B1--RNF169 HAVANA mRNA 27421 40032 . + . FI_gene_label "RNF169^ENSG00000166439.6" ; ID "SLCO2B1--RNF169^ENST00000299563.5" ; Parent "SLCO2B1--RNF169^RNF169^ENSG00000166439.6" ; ccdsid "CCDS41691.1" ; exon_id "ENSE00001243156.4" ; exon_number 1 ; gene_id "SLCO2B1--RNF169^RNF169^ENSG00000166439.6" ; gene_name RNF169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165516.3" ; havana_transcript "OTTHUMT00000384741.2" ; hgnc_id "HGNC:26961" ; level 2 ; orig_coord_info "chr11,74748881,74749382,+" ; protein_id "ENSP00000299563.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLCO2B1--RNF169^ENST00000299563.5" ; transcript_name "RNF169-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLCO2B1--SPCS2 HAVANA gene 27440 35121 . + . FI_gene_label "SPCS2^ENSG00000118363.12" ; ID "SLCO2B1--SPCS2^SPCS2^ENSG00000118363.12" ; ccdsid "CCDS44681.1" ; exon_id "ENSE00003846827.1" ; exon_number 1 ; gene_id "SLCO2B1--SPCS2^SPCS2^ENSG00000118363.12" ; gene_name SPCS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165517.3" ; havana_transcript "OTTHUMT00000384587.2" ; hgnc_id "HGNC:28962" ; level 2 ; orig_coord_info "chr11,74949286,74949399,+" ; protein_id "ENSP00000263672.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SLCO2B1--SPCS2^ENST00000263672.11" ; transcript_name "SPCS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLCO2B1--SPCS2 HAVANA mRNA 27440 35121 . + . FI_gene_label "SPCS2^ENSG00000118363.12" ; ID "SLCO2B1--SPCS2^ENST00000263672.11" ; Parent "SLCO2B1--SPCS2^SPCS2^ENSG00000118363.12" ; ccdsid "CCDS44681.1" ; exon_id "ENSE00003846827.1" ; exon_number 1 ; gene_id "SLCO2B1--SPCS2^SPCS2^ENSG00000118363.12" ; gene_name SPCS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165517.3" ; havana_transcript "OTTHUMT00000384587.2" ; hgnc_id "HGNC:28962" ; level 2 ; orig_coord_info "chr11,74949286,74949399,+" ; protein_id "ENSP00000263672.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SLCO2B1--SPCS2^ENST00000263672.11" ; transcript_name "SPCS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLCO2B1--SPCS2 HAVANA gene 2340 24420 . + . FI_gene_label "SLCO2B1^ENSG00000137491.15" ; ID "SLCO2B1--SPCS2^SLCO2B1^ENSG00000137491.15" ; ccdsid "CCDS8235.1" ; exon_id "ENSE00002177754.2" ; exon_number 1 ; gene_id "SLCO2B1--SPCS2^SLCO2B1^ENSG00000137491.15" ; gene_name SLCO2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165420.5" ; havana_transcript "OTTHUMT00000383933.3" ; hgnc_id "HGNC:10962" ; level 2 ; orig_coord_info "chr11,75151382,75151397,+" ; protein_id "ENSP00000289575.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SLCO2B1--SPCS2^ENST00000289575.10" ; transcript_name "SLCO2B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLCO2B1--SPCS2 HAVANA mRNA 2340 24420 . + . FI_gene_label "SLCO2B1^ENSG00000137491.15" ; ID "SLCO2B1--SPCS2^ENST00000289575.10" ; Parent "SLCO2B1--SPCS2^SLCO2B1^ENSG00000137491.15" ; ccdsid "CCDS8235.1" ; exon_id "ENSE00002177754.2" ; exon_number 1 ; gene_id "SLCO2B1--SPCS2^SLCO2B1^ENSG00000137491.15" ; gene_name SLCO2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165420.5" ; havana_transcript "OTTHUMT00000383933.3" ; hgnc_id "HGNC:10962" ; level 2 ; orig_coord_info "chr11,75151382,75151397,+" ; protein_id "ENSP00000289575.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SLCO2B1--SPCS2^ENST00000289575.10" ; transcript_name "SLCO2B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UVRAG--POLD3 HAVANA gene 32394 50404 . + . FI_gene_label "POLD3^ENSG00000077514.9" ; ID "UVRAG--POLD3^POLD3^ENSG00000077514.9" ; ccdsid "CCDS8233.1" ; exon_id "ENSE00002198152.2" ; exon_number 1 ; gene_id "UVRAG--POLD3^POLD3^ENSG00000077514.9" ; gene_name POLD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165621.4" ; havana_transcript "OTTHUMT00000385376.2" ; hgnc_id "HGNC:20932" ; level 2 ; orig_coord_info "chr11,74592659,74592718,+" ; protein_id "ENSP00000263681.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UVRAG--POLD3^ENST00000263681.7" ; transcript_name "POLD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
UVRAG--POLD3 HAVANA mRNA 32394 50404 . + . FI_gene_label "POLD3^ENSG00000077514.9" ; ID "UVRAG--POLD3^ENST00000263681.7" ; Parent "UVRAG--POLD3^POLD3^ENSG00000077514.9" ; ccdsid "CCDS8233.1" ; exon_id "ENSE00002198152.2" ; exon_number 1 ; gene_id "UVRAG--POLD3^POLD3^ENSG00000077514.9" ; gene_name POLD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165621.4" ; havana_transcript "OTTHUMT00000385376.2" ; hgnc_id "HGNC:20932" ; level 2 ; orig_coord_info "chr11,74592659,74592718,+" ; protein_id "ENSP00000263681.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UVRAG--POLD3^ENST00000263681.7" ; transcript_name "POLD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UVRAG--POLD3 HAVANA gene 1001 29367 . + . FI_gene_label "UVRAG^ENSG00000198382.9" ; ID "UVRAG--POLD3^UVRAG^ENSG00000198382.9" ; ccdsid "CCDS8241.1" ; exon_id "ENSE00001153107.8" ; exon_number 1 ; gene_id "UVRAG--POLD3^UVRAG^ENSG00000198382.9" ; gene_name UVRAG ; gene_type protein_coding ; havana_gene "OTTHUMG00000165319.3" ; havana_transcript "OTTHUMT00000383430.2" ; hgnc_id "HGNC:12640" ; level 2 ; orig_coord_info "chr11,75815408,75815524,+" ; protein_id "ENSP00000348455.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UVRAG--POLD3^ENST00000356136.8" ; transcript_name "UVRAG-201" ; transcript_support_level 1 ; transcript_type protein_coding
UVRAG--POLD3 HAVANA mRNA 1001 29367 . + . FI_gene_label "UVRAG^ENSG00000198382.9" ; ID "UVRAG--POLD3^ENST00000356136.8" ; Parent "UVRAG--POLD3^UVRAG^ENSG00000198382.9" ; ccdsid "CCDS8241.1" ; exon_id "ENSE00001153107.8" ; exon_number 1 ; gene_id "UVRAG--POLD3^UVRAG^ENSG00000198382.9" ; gene_name UVRAG ; gene_type protein_coding ; havana_gene "OTTHUMG00000165319.3" ; havana_transcript "OTTHUMT00000383430.2" ; hgnc_id "HGNC:12640" ; level 2 ; orig_coord_info "chr11,75815408,75815524,+" ; protein_id "ENSP00000348455.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UVRAG--POLD3^ENST00000356136.8" ; transcript_name "UVRAG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF528--ZNF610 HAVANA gene 17953 27667 . + . FI_gene_label "ZNF610^ENSG00000167554.15" ; ID "ZNF528--ZNF610^ZNF610^ENSG00000167554.15" ; ccdsid "CCDS12851.1" ; exon_id "ENSE00002470175.1" ; exon_number 3 ; gene_id "ZNF528--ZNF610^ZNF610^ENSG00000167554.15" ; gene_name ZNF610 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182645.4" ; havana_transcript "OTTHUMT00000462863.1" ; hgnc_id "HGNC:26687" ; level 2 ; orig_coord_info "chr19,52349173,52349235,+" ; protein_id "ENSP00000324441.8" ; tag basic appris_principal_2 CCDS ; transcript_id "ZNF528--ZNF610^ENST00000321287.12" ; transcript_name "ZNF610-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF528--ZNF610 HAVANA mRNA 17953 27667 . + . FI_gene_label "ZNF610^ENSG00000167554.15" ; ID "ZNF528--ZNF610^ENST00000321287.12" ; Parent "ZNF528--ZNF610^ZNF610^ENSG00000167554.15" ; ccdsid "CCDS12851.1" ; exon_id "ENSE00002470175.1" ; exon_number 3 ; gene_id "ZNF528--ZNF610^ZNF610^ENSG00000167554.15" ; gene_name ZNF610 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182645.4" ; havana_transcript "OTTHUMT00000462863.1" ; hgnc_id "HGNC:26687" ; level 2 ; orig_coord_info "chr19,52349173,52349235,+" ; protein_id "ENSP00000324441.8" ; tag basic appris_principal_2 CCDS ; transcript_id "ZNF528--ZNF610^ENST00000321287.12" ; transcript_name "ZNF610-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF528--ZNF610 HAVANA gene 1001 14939 . + . FI_gene_label "ZNF528^ENSG00000167555.14" ; ID "ZNF528--ZNF610^ZNF528^ENSG00000167555.14" ; ccdsid "CCDS33091.1" ; exon_id "ENSE00003647276.1" ; exon_number 4 ; gene_id "ZNF528--ZNF610^ZNF528^ENSG00000167555.14" ; gene_name ZNF528 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156494.9" ; havana_transcript "OTTHUMT00000344336.2" ; hgnc_id "HGNC:29384" ; level 2 ; orig_coord_info "chr19,52402014,52402028,+" ; protein_id "ENSP00000353652.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF528--ZNF610^ENST00000360465.8" ; transcript_name "ZNF528-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF528--ZNF610 HAVANA mRNA 1001 14939 . + . FI_gene_label "ZNF528^ENSG00000167555.14" ; ID "ZNF528--ZNF610^ENST00000360465.8" ; Parent "ZNF528--ZNF610^ZNF528^ENSG00000167555.14" ; ccdsid "CCDS33091.1" ; exon_id "ENSE00003647276.1" ; exon_number 4 ; gene_id "ZNF528--ZNF610^ZNF528^ENSG00000167555.14" ; gene_name ZNF528 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156494.9" ; havana_transcript "OTTHUMT00000344336.2" ; hgnc_id "HGNC:29384" ; level 2 ; orig_coord_info "chr19,52402014,52402028,+" ; protein_id "ENSP00000353652.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF528--ZNF610^ENST00000360465.8" ; transcript_name "ZNF528-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF528--ZNF880 HAVANA gene 17973 21182 . + . FI_gene_label "ZNF880^ENSG00000221923.9" ; ID "ZNF528--ZNF880^ZNF880^ENSG00000221923.9" ; exon_id "ENSE00001665096.1" ; exon_number 1 ; gene_id "ZNF528--ZNF880^ZNF880^ENSG00000221923.9" ; gene_name ZNF880 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167972.3" ; havana_transcript "OTTHUMT00000397373.1" ; hgnc_id "HGNC:37249" ; level 2 ; orig_coord_info "chr19,52369966,52369977,+" ; protein_id "ENSP00000343625.5" ; tag basic ; transcript_id "ZNF528--ZNF880^ENST00000344085.9" ; transcript_name "ZNF880-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF528--ZNF880 HAVANA mRNA 17973 21182 . + . FI_gene_label "ZNF880^ENSG00000221923.9" ; ID "ZNF528--ZNF880^ENST00000344085.9" ; Parent "ZNF528--ZNF880^ZNF880^ENSG00000221923.9" ; exon_id "ENSE00001665096.1" ; exon_number 1 ; gene_id "ZNF528--ZNF880^ZNF880^ENSG00000221923.9" ; gene_name ZNF880 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167972.3" ; havana_transcript "OTTHUMT00000397373.1" ; hgnc_id "HGNC:37249" ; level 2 ; orig_coord_info "chr19,52369966,52369977,+" ; protein_id "ENSP00000343625.5" ; tag basic ; transcript_id "ZNF528--ZNF880^ENST00000344085.9" ; transcript_name "ZNF880-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF528--ZNF880 HAVANA gene 1001 14939 . + . FI_gene_label "ZNF528^ENSG00000167555.14" ; ID "ZNF528--ZNF880^ZNF528^ENSG00000167555.14" ; ccdsid "CCDS33091.1" ; exon_id "ENSE00003647276.1" ; exon_number 4 ; gene_id "ZNF528--ZNF880^ZNF528^ENSG00000167555.14" ; gene_name ZNF528 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156494.9" ; havana_transcript "OTTHUMT00000344336.2" ; hgnc_id "HGNC:29384" ; level 2 ; orig_coord_info "chr19,52402014,52402028,+" ; protein_id "ENSP00000353652.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF528--ZNF880^ENST00000360465.8" ; transcript_name "ZNF528-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF528--ZNF880 HAVANA mRNA 1001 14939 . + . FI_gene_label "ZNF528^ENSG00000167555.14" ; ID "ZNF528--ZNF880^ENST00000360465.8" ; Parent "ZNF528--ZNF880^ZNF528^ENSG00000167555.14" ; ccdsid "CCDS33091.1" ; exon_id "ENSE00003647276.1" ; exon_number 4 ; gene_id "ZNF528--ZNF880^ZNF528^ENSG00000167555.14" ; gene_name ZNF528 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156494.9" ; havana_transcript "OTTHUMT00000344336.2" ; hgnc_id "HGNC:29384" ; level 2 ; orig_coord_info "chr19,52402014,52402028,+" ; protein_id "ENSP00000353652.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF528--ZNF880^ENST00000360465.8" ; transcript_name "ZNF528-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AGAP12P--FRMPD2 HAVANA gene 1042 9399 . + . FI_gene_label "AGAP12P^ENSG00000265018.6" ; ID "AGAP12P--FRMPD2^AGAP12P^ENSG00000265018.6" ; exon_id "ENSE00002718806.2" ; exon_number 1 ; gene_id "AGAP12P--FRMPD2^AGAP12P^ENSG00000265018.6" ; gene_name AGAP12P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018164.4" ; havana_transcript "OTTHUMT00000047912.4" ; hgnc_id "HGNC:23661" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48031376,48031599,-" ; tag pseudo_consens basic ; transcript_id "AGAP12P--FRMPD2^ENST00000585227.6" ; transcript_name "AGAP12P-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AGAP12P--FRMPD2 HAVANA RNA 1042 9399 . + . FI_gene_label "AGAP12P^ENSG00000265018.6" ; ID "AGAP12P--FRMPD2^ENST00000585227.6" ; Parent "AGAP12P--FRMPD2^AGAP12P^ENSG00000265018.6" ; exon_id "ENSE00002718806.2" ; exon_number 1 ; gene_id "AGAP12P--FRMPD2^AGAP12P^ENSG00000265018.6" ; gene_name AGAP12P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018164.4" ; havana_transcript "OTTHUMT00000047912.4" ; hgnc_id "HGNC:23661" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48031376,48031599,-" ; tag pseudo_consens basic ; transcript_id "AGAP12P--FRMPD2^ENST00000585227.6" ; transcript_name "AGAP12P-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AL512590.2--CCDC180 HAVANA gene 1001 11243 . + . FI_gene_label "AL512590.2^ENSG00000254633.2" ; ID "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; exon_id "ENSE00002146032.2" ; exon_number 1 ; gene_id "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; gene_name "AL512590.2" ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000167000.2" ; havana_transcript "OTTHUMT00000392365.2" ; level 2 ; orig_coord_info "chr9,97276569,97276697,+" ; tag basic ; transcript_id "AL512590.2--CCDC180^ENST00000531758.2" ; transcript_name "AL512590.2-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
AL512590.2--CCDC180 HAVANA RNA 1001 11243 . + . FI_gene_label "AL512590.2^ENSG00000254633.2" ; ID "AL512590.2--CCDC180^ENST00000531758.2" ; Parent "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; exon_id "ENSE00002146032.2" ; exon_number 1 ; gene_id "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; gene_name "AL512590.2" ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000167000.2" ; havana_transcript "OTTHUMT00000392365.2" ; level 2 ; orig_coord_info "chr9,97276569,97276697,+" ; tag basic ; transcript_id "AL512590.2--CCDC180^ENST00000531758.2" ; transcript_name "AL512590.2-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
AP001347.1--ANKRD20A11P HAVANA gene 8798 22852 . + . FI_gene_label "ANKRD20A11P^ENSG00000215559.8" ; ID "AP001347.1--ANKRD20A11P^ANKRD20A11P^ENSG00000215559.8" ; exon_id "ENSE00002284794.1" ; exon_number 1 ; gene_id "AP001347.1--ANKRD20A11P^ANKRD20A11P^ENSG00000215559.8" ; gene_name ANKRD20A11P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074237.2" ; havana_transcript "OTTHUMT00000157750.1" ; hgnc_id "HGNC:42024" ; level 2 ; orig_coord_info "chr21,13979702,13980437,-" ; tag basic ; transcript_id "AP001347.1--ANKRD20A11P^ENST00000344693.5" ; transcript_name "ANKRD20A11P-201" ; transcript_support_level 1 ; transcript_type processed_transcript
AP001347.1--ANKRD20A11P HAVANA RNA 8798 22852 . + . FI_gene_label "ANKRD20A11P^ENSG00000215559.8" ; ID "AP001347.1--ANKRD20A11P^ENST00000344693.5" ; Parent "AP001347.1--ANKRD20A11P^ANKRD20A11P^ENSG00000215559.8" ; exon_id "ENSE00002284794.1" ; exon_number 1 ; gene_id "AP001347.1--ANKRD20A11P^ANKRD20A11P^ENSG00000215559.8" ; gene_name ANKRD20A11P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074237.2" ; havana_transcript "OTTHUMT00000157750.1" ; hgnc_id "HGNC:42024" ; level 2 ; orig_coord_info "chr21,13979702,13980437,-" ; tag basic ; transcript_id "AP001347.1--ANKRD20A11P^ENST00000344693.5" ; transcript_name "ANKRD20A11P-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
AP001347.1--ANKRD20A11P HAVANA gene 1003 5797 . + . FI_gene_label "AP001347.1^ENSG00000224905.7" ; ID "AP001347.1--ANKRD20A11P^AP001347.1^ENSG00000224905.7" ; exon_id "ENSE00001608016.1" ; exon_number 1 ; gene_id "AP001347.1--ANKRD20A11P^AP001347.1^ENSG00000224905.7" ; gene_name "AP001347.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000074260.3" ; havana_transcript "OTTHUMT00000157812.1" ; level 2 ; orig_coord_info "chr21,14027421,14027597,+" ; tag basic ; transcript_id "AP001347.1--ANKRD20A11P^ENST00000428809.5" ; transcript_name "AP001347.1-202" ; transcript_support_level 1 ; transcript_type lncRNA
AP001347.1--ANKRD20A11P HAVANA RNA 1003 5797 . + . FI_gene_label "AP001347.1^ENSG00000224905.7" ; ID "AP001347.1--ANKRD20A11P^ENST00000428809.5" ; Parent "AP001347.1--ANKRD20A11P^AP001347.1^ENSG00000224905.7" ; exon_id "ENSE00001608016.1" ; exon_number 1 ; gene_id "AP001347.1--ANKRD20A11P^AP001347.1^ENSG00000224905.7" ; gene_name "AP001347.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000074260.3" ; havana_transcript "OTTHUMT00000157812.1" ; level 2 ; orig_coord_info "chr21,14027421,14027597,+" ; tag basic ; transcript_id "AP001347.1--ANKRD20A11P^ENST00000428809.5" ; transcript_name "AP001347.1-202" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
ASTN2--AL138749.1 HAVANA gene 38785 40322 . + . FI_gene_label "AL138749.1^ENSG00000226798.1" ; ID "ASTN2--AL138749.1^AL138749.1^ENSG00000226798.1" ; exon_id "ENSE00001788337.1" ; exon_number 1 ; gene_id "ASTN2--AL138749.1^AL138749.1^ENSG00000226798.1" ; gene_name "AL138749.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000020080.1" ; havana_transcript "OTTHUMT00000052804.1" ; level 2 ; orig_coord_info "chr9,80871173,80871295,-" ; tag basic ; transcript_id "ASTN2--AL138749.1^ENST00000397864.2" ; transcript_name "AL138749.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
ASTN2--AL138749.1 HAVANA RNA 38785 40322 . + . FI_gene_label "AL138749.1^ENSG00000226798.1" ; ID "ASTN2--AL138749.1^ENST00000397864.2" ; Parent "ASTN2--AL138749.1^AL138749.1^ENSG00000226798.1" ; exon_id "ENSE00001788337.1" ; exon_number 1 ; gene_id "ASTN2--AL138749.1^AL138749.1^ENSG00000226798.1" ; gene_name "AL138749.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000020080.1" ; havana_transcript "OTTHUMT00000052804.1" ; level 2 ; orig_coord_info "chr9,80871173,80871295,-" ; tag basic ; transcript_id "ASTN2--AL138749.1^ENST00000397864.2" ; transcript_name "AL138749.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
ASTN2--RPS20P25 HAVANA gene 38785 39136 . + . FI_gene_label "RPS20P25^ENSG00000228375.1" ; ID "ASTN2--RPS20P25^RPS20P25^ENSG00000228375.1" ; exon_id "ENSE00001646536.1" ; exon_number 1 ; gene_id "ASTN2--RPS20P25^RPS20P25^ENSG00000228375.1" ; gene_name RPS20P25 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000020081.1" ; havana_transcript "OTTHUMT00000052805.1" ; hgnc_id "HGNC:35866" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,81410279,81410630,+" ; tag pseudo_consens basic ; transcript_id "ASTN2--RPS20P25^ENST00000412447.1" ; transcript_name "RPS20P25-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ASTN2--RPS20P25 HAVANA RNA 38785 39136 . + . FI_gene_label "RPS20P25^ENSG00000228375.1" ; ID "ASTN2--RPS20P25^ENST00000412447.1" ; Parent "ASTN2--RPS20P25^RPS20P25^ENSG00000228375.1" ; exon_id "ENSE00001646536.1" ; exon_number 1 ; gene_id "ASTN2--RPS20P25^RPS20P25^ENSG00000228375.1" ; gene_name RPS20P25 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000020081.1" ; havana_transcript "OTTHUMT00000052805.1" ; hgnc_id "HGNC:35866" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,81410279,81410630,+" ; tag pseudo_consens basic ; transcript_id "ASTN2--RPS20P25^ENST00000412447.1" ; transcript_name "RPS20P25-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
CHRDL2--P4HA3-AS1 HAVANA gene 17506 21835 . + . FI_gene_label "P4HA3-AS1^ENSG00000246211.2" ; ID "CHRDL2--P4HA3-AS1^P4HA3-AS1^ENSG00000246211.2" ; exon_id "ENSE00001981903.1" ; exon_number 1 ; gene_id "CHRDL2--P4HA3-AS1^P4HA3-AS1^ENSG00000246211.2" ; gene_name "P4HA3-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168131.1" ; havana_transcript "OTTHUMT00000398323.1" ; hgnc_id "HGNC:53160" ; level 2 ; orig_coord_info "chr11,74311362,74311449,+" ; tag basic ; transcript_id "CHRDL2--P4HA3-AS1^ENST00000502071.2" ; transcript_name "P4HA3-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
CHRDL2--P4HA3-AS1 HAVANA RNA 17506 21835 . + . FI_gene_label "P4HA3-AS1^ENSG00000246211.2" ; ID "CHRDL2--P4HA3-AS1^ENST00000502071.2" ; Parent "CHRDL2--P4HA3-AS1^P4HA3-AS1^ENSG00000246211.2" ; exon_id "ENSE00001981903.1" ; exon_number 1 ; gene_id "CHRDL2--P4HA3-AS1^P4HA3-AS1^ENSG00000246211.2" ; gene_name "P4HA3-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168131.1" ; havana_transcript "OTTHUMT00000398323.1" ; hgnc_id "HGNC:53160" ; level 2 ; orig_coord_info "chr11,74311362,74311449,+" ; tag basic ; transcript_id "CHRDL2--P4HA3-AS1^ENST00000502071.2" ; transcript_name "P4HA3-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
CRYZL2P--SEC16B HAVANA RNA 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^ENST00000462729.2" ; Parent "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
PMS2P5--CCDC146 HAVANA gene 1001 3692 . + . FI_gene_label "PMS2P5^ENSG00000123965.13" ; ID "PMS2P5--CCDC146^PMS2P5^ENSG00000123965.13" ; exon_id "ENSE00002489954.1" ; exon_number 1 ; gene_id "PMS2P5--CCDC146^PMS2P5^ENSG00000123965.13" ; gene_name PMS2P5 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000156014.4" ; havana_transcript "OTTHUMT00000343742.3" ; hgnc_id "HGNC:9130" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,74894116,74894257,+" ; tag basic ; transcript_id "PMS2P5--CCDC146^ENST00000398065.3" ; transcript_name "PMS2P5-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
PMS2P5--CCDC146 HAVANA RNA 1001 3692 . + . FI_gene_label "PMS2P5^ENSG00000123965.13" ; ID "PMS2P5--CCDC146^ENST00000398065.3" ; Parent "PMS2P5--CCDC146^PMS2P5^ENSG00000123965.13" ; exon_id "ENSE00002489954.1" ; exon_number 1 ; gene_id "PMS2P5--CCDC146^PMS2P5^ENSG00000123965.13" ; gene_name PMS2P5 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000156014.4" ; havana_transcript "OTTHUMT00000343742.3" ; hgnc_id "HGNC:9130" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,74894116,74894257,+" ; tag basic ; transcript_id "PMS2P5--CCDC146^ENST00000398065.3" ; transcript_name "PMS2P5-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
SHANK2--AP000439.2 HAVANA gene 61945 65320 . + . FI_gene_label "AP000439.2^ENSG00000255980.1" ; ID "SHANK2--AP000439.2^AP000439.2^ENSG00000255980.1" ; exon_id "ENSE00002287534.1" ; exon_number 1 ; gene_id "SHANK2--AP000439.2^AP000439.2^ENSG00000255980.1" ; gene_name "AP000439.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168000.1" ; havana_transcript "OTTHUMT00000397433.1" ; level 2 ; orig_coord_info "chr11,69425690,69425806,+" ; tag basic ; transcript_id "SHANK2--AP000439.2^ENST00000545202.1" ; transcript_name "AP000439.2-201" ; transcript_support_level 2 ; transcript_type lncRNA
SHANK2--AP000439.2 HAVANA RNA 61945 65320 . + . FI_gene_label "AP000439.2^ENSG00000255980.1" ; ID "SHANK2--AP000439.2^ENST00000545202.1" ; Parent "SHANK2--AP000439.2^AP000439.2^ENSG00000255980.1" ; exon_id "ENSE00002287534.1" ; exon_number 1 ; gene_id "SHANK2--AP000439.2^AP000439.2^ENSG00000255980.1" ; gene_name "AP000439.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168000.1" ; havana_transcript "OTTHUMT00000397433.1" ; level 2 ; orig_coord_info "chr11,69425690,69425806,+" ; tag basic ; transcript_id "SHANK2--AP000439.2^ENST00000545202.1" ; transcript_name "AP000439.2-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
495 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
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------------------------------ Check8: check cds -------------------------------
No problem found
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----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
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----------------------------- Check10: check utrs ------------------------------
922 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
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------------------------ Check11: all level2 locations -------------------------
No problem found
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------------------------ Check12: all level1 locations -------------------------
We fixed 51 wrong level1 location cases
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---------------------- Check13: remove identical isoforms ----------------------
None found
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------ End checks (done in 0 second) ------
GFF3 file parsed