Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/a5c1d822493286b6155fa42255152a/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/a5c1d822493286b6155fa42255152a/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/541a344ddc40cc3bfbe5f1a9e884e2/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.arriba.fusions.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/09/a7ecdb27117590dd6e7bf9e221420e/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)
AIH curated blacklist: matched 1 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 13
Pass (FILTER=PASS): 0 (0.0%)
Fail (FILTER=FAIL): 13 (100.0%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 1
All 1 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 2
total_reads_below_min(3.0<8.0): 1
total_reads_below_min(2.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(7.0<8.0);aih_curated_blacklist: 1
Breakdown by confidence:
high: 0 pass, 2 fail (total: 2)
low: 0 pass, 7 fail (total: 7)
medium: 0 pass, 4 fail (total: 4)
Arriba filter: 13 rows -> 0 PASS; wrote aih-tih-sc-2482ef-R1_A23WJ53LT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-2482ef-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-2482ef-R1_A23WJ53LT4_1.arriba.fusions.filter_summary.txt