File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/a5c1d822493286b6155fa42255152a/.command.out
Size
1.3 KB
Attempt
  AIH curated blacklist: matched 1 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 13
  Pass (FILTER=PASS): 0 (0.0%)
  Fail (FILTER=FAIL): 13 (100.0%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 1
  All 1 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 2
  total_reads_below_min(3.0<8.0): 1
  total_reads_below_min(2.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0);aih_curated_blacklist: 1

Breakdown by confidence:
  high: 0 pass, 2 fail (total: 2)
  low: 0 pass, 7 fail (total: 7)
  medium: 0 pass, 4 fail (total: 4)
Arriba filter: 13 rows -> 0 PASS; wrote aih-tih-sc-2482ef-R1_A23WJ53LT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-2482ef-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-2482ef-R1_A23WJ53LT4_1.arriba.fusions.filter_summary.txt