Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/18f6ba4edcdc30a4d4b79ec1baa49d/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/76dc51917ed1044a20a20c747e6f38/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/76dc51917ed1044a20a20c747e6f38/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 265048248
unpaired = 4092007
MERGED PAIRED END READS = 265048248
MATES PROCESSED = 534188503
TOTAL READS     = 269140255
DISTINCT READS  = 1.2289e+08
DISTINCT COUNTS = 1884
MAX COUNT       = 778302
COUNTS OF 1     = 6.86987e+07
MAX TERMS       = 100
OBSERVED COUNTS (778303)
1	68698728
2	28378915
3	12315395
4	5697674
5	2847418
6	1541424
7	899547
8	560885
9	372302
10	260169
11	190020
12	144020
13	112545
14	90397
15	74259
16	61337
17	52239
18	44288
19	38162
20	33615
21	29554
22	26577
23	23745
24	21328
25	18900
26	17417
27	15698
28	14605
29	13692
30	12586
31	11585
32	10779
33	10050
34	9170
35	8648
36	8186
37	7668
38	7175
39	6692
40	6427
41	6033
42	5721
43	5332
44	5179
45	4889
46	4757
47	4364
48	4313
49	3992
50	3896
51	3661
52	3594
53	3435
54	3326
55	3141
56	2989
57	2918
58	2703
59	2637
60	2527
61	2437
62	2394
63	2409
64	2144
65	2173
66	2075
67	2047
68	1886
69	1894
70	1788
71	1819
72	1737
73	1619
74	1534
75	1524
76	1487
77	1448
78	1428
79	1277
80	1376
81	1370
82	1325
83	1298
84	1204
85	1155
86	1119
87	1169
88	1158
89	1060
90	987
91	983
92	967
93	952
94	936
95	908
96	904
97	857
98	833
99	822
100	804
101	770
102	840
103	818
104	789
105	724
106	736
107	714
108	698
109	671
110	645
111	625
112	637
113	606
114	620
115	598
116	582
117	595
118	563
119	578
120	553
121	509
122	473
123	518
124	504
125	512
126	478
127	475
128	490
129	483
130	471
131	444
132	427
133	388
134	453
135	389
136	390
137	418
138	419
139	368
140	375
141	363
142	348
143	353
144	349
145	360
146	340
147	328
148	339
149	356
150	320
151	327
152	299
153	307
154	290
155	292
156	288
157	307
158	283
159	289
160	304
161	300
162	270
163	264
164	271
165	263
166	226
167	266
168	267
169	260
170	254
171	220
172	221
173	221
174	269
175	243
176	223
177	233
178	233
179	219
180	224
181	202
182	227
183	220
184	195
185	186
186	185
187	189
188	176
189	207
190	180
191	187
192	171
193	161
194	199
195	201
196	196
197	192
198	157
199	158
200	171
201	175
202	162
203	169
204	157
205	182
206	164
207	149
208	175
209	158
210	135
211	141
212	144
213	136
214	155
215	131
216	148
217	147
218	128
219	141
220	116
221	137
222	133
223	131
224	148
225	124
226	128
227	126
228	119
229	128
230	130
231	111
232	108
233	112
234	112
235	94
236	96
237	111
238	115
239	117
240	108
241	107
242	104
243	103
244	91
245	92
246	104
247	105
248	106
249	92
250	105
251	100
252	103
253	90
254	102
255	97
256	89
257	110
258	98
259	87
260	76
261	86
262	84
263	79
264	100
265	84
266	65
267	96
268	72
269	81
270	87
271	101
272	80
273	74
274	88
275	76
276	83
277	79
278	82
279	78
280	65
281	69
282	73
283	76
284	75
285	75
286	57
287	59
288	89
289	68
290	69
291	70
292	69
293	74
294	84
295	72
296	63
297	62
298	63
299	67
300	54
301	47
302	78
303	64
304	68
305	65
306	59
307	69
308	48
309	66
310	66
311	63
312	62
313	63
314	57
315	47
316	49
317	65
318	52
319	44
320	64
321	42
322	45
323	56
324	55
325	33
326	36
327	62
328	45
329	41
330	44
331	60
332	52
333	43
334	50
335	48
336	44
337	61
338	46
339	50
340	43
341	44
342	55
343	42
344	48
345	42
346	44
347	45
348	38
349	47
350	34
351	44
352	43
353	42
354	41
355	32
356	31
357	39
358	43
359	45
360	41
361	45
362	42
363	38
364	36
365	36
366	36
367	30
368	53
369	36
370	29
371	38
372	40
373	50
374	39
375	46
376	32
377	34
378	35
379	43
380	33
381	27
382	32
383	28
384	42
385	32
386	27
387	41
388	38
389	35
390	28
391	36
392	32
393	36
394	28
395	34
396	32
397	26
398	28
399	30
400	33
401	30
402	28
403	37
404	34
405	29
406	39
407	30
408	23
409	24
410	30
411	26
412	30
413	19
414	33
415	24
416	28
417	19
418	41
419	29
420	25
421	27
422	28
423	35
424	27
425	17
426	27
427	22
428	29
429	30
430	28
431	30
432	32
433	24
434	26
435	31
436	29
437	33
438	24
439	12
440	25
441	24
442	24
443	18
444	37
445	18
446	20
447	28
448	19
449	20
450	22
451	22
452	24
453	17
454	15
455	28
456	22
457	22
458	33
459	25
460	21
461	25
462	16
463	19
464	26
465	12
466	25
467	22
468	11
469	23
470	25
471	23
472	22
473	22
474	17
475	19
476	19
477	24
478	25
479	26
480	26
481	12
482	24
483	24
484	16
485	23
486	18
487	21
488	17
489	15
490	17
491	18
492	16
493	22
494	13
495	17
496	23
497	21
498	17
499	24
500	17
501	12
502	19
503	20
504	18
505	14
506	14
507	15
508	17
509	12
510	10
511	14
512	12
513	16
514	13
515	15
516	14
517	15
518	8
519	14
520	9
521	17
522	17
523	16
524	15
525	13
526	17
527	13
528	14
529	17
530	18
531	12
532	14
533	20
534	13
535	15
536	8
537	12
538	16
539	11
540	10
541	14
542	15
543	17
544	16
545	10
546	7
547	19
548	8
549	16
550	9
551	15
552	19
553	14
554	9
555	12
556	9
557	18
558	7
559	4
560	15
561	11
562	14
563	14
564	10
565	19
566	11
567	21
568	12
569	7
570	10
571	9
572	17
573	9
574	16
575	11
576	22
577	17
578	14
579	12
580	10
581	9
582	15
583	16
584	8
585	8
586	8
587	11
588	16
589	14
590	14
591	9
592	8
593	12
594	10
595	13
596	12
597	12
598	13
599	14
600	17
601	12
602	7
603	9
604	10
605	12
606	12
607	14
608	12
609	12
610	9
611	5
612	8
613	15
614	14
615	12
616	14
617	15
618	10
619	10
620	15
621	11
622	9
623	11
624	8
625	16
626	10
627	11
628	12
629	14
630	10
631	7
632	9
633	6
634	11
635	6
636	7
637	12
638	7
639	12
640	13
641	7
642	13
643	6
644	9
645	9
646	7
647	11
648	9
649	8
650	7
651	6
652	8
653	2
654	13
655	12
656	10
657	5
658	8
659	10
660	7
661	11
662	7
663	5
664	9
665	9
666	8
667	7
668	13
669	10
670	7
671	10
672	6
673	12
674	9
675	6
676	5
677	13
678	4
679	4
680	11
681	8
682	8
683	11
684	7
685	4
686	10
687	6
688	7
689	8
690	8
691	9
692	2
693	11
694	7
695	4
696	2
697	14
698	10
699	4
700	4
701	10
702	7
703	8
704	7
705	7
706	6
707	7
708	10
709	6
710	9
711	8
712	4
713	7
714	10
715	4
716	6
717	7
718	6
719	4
720	7
721	8
722	7
723	8
724	6
725	7
726	7
727	6
728	6
729	7
730	4
731	8
732	9
733	9
734	3
735	3
736	3
737	10
738	10
739	6
740	5
741	4
742	4
743	7
744	7
745	2
746	7
747	7
748	6
749	6
750	6
751	5
752	5
753	6
754	2
755	4
756	9
757	6
758	5
759	11
760	2
761	3
762	4
763	9
764	7
765	9
766	6
767	3
768	3
769	4
770	4
771	3
772	8
773	4
774	4
775	4
776	4
777	7
778	5
779	6
780	3
781	4
782	2
783	2
784	8
785	3
786	3
787	5
788	9
789	7
790	4
791	1
792	4
793	2
794	4
795	8
796	4
797	6
798	5
799	5
800	5
801	3
802	3
803	3
804	7
805	3
806	6
807	7
808	1
809	2
810	6
811	1
812	6
813	4
814	10
815	4
816	2
817	6
818	7
819	4
820	3
821	2
822	3
823	3
824	2
825	5
826	8
827	2
828	3
829	2
830	1
831	4
832	5
833	3
834	6
835	3
836	5
837	2
838	4
839	2
840	3
841	8
842	4
843	3
844	4
845	4
846	2
847	4
848	6
849	6
850	6
851	3
852	6
853	3
854	4
855	7
856	5
857	2
858	4
859	1
860	2
861	1
862	2
863	1
864	3
865	5
866	4
868	4
869	2
870	5
871	4
872	2
873	3
874	6
875	2
876	6
877	2
878	3
879	1
880	5
881	3
882	7
884	2
885	4
886	7
887	4
888	3
889	4
890	2
891	2
892	3
893	4
894	1
895	1
896	1
897	3
898	4
899	5
900	2
901	3
902	5
904	4
905	2
906	8
907	7
908	2
909	3
910	5
912	3
913	4
914	4
915	7
916	8
917	1
918	6
919	3
920	4
921	5
922	3
923	2
924	3
925	5
926	3
927	2
928	1
929	2
930	5
931	6
932	2
933	1
934	3
935	3
936	1
937	2
938	1
939	1
940	1
941	3
942	5
943	2
944	1
945	3
946	2
947	3
948	2
950	1
951	4
952	1
953	1
954	6
955	3
956	1
957	3
958	5
959	2
960	3
961	2
962	4
963	5
964	5
965	2
966	2
967	2
968	1
969	5
970	3
971	4
972	3
973	4
974	2
975	5
976	1
977	1
978	3
979	1
980	5
982	3
983	1
984	4
985	4
986	5
987	5
988	5
989	5
990	6
991	2
992	1
993	4
994	6
995	2
996	3
997	2
998	2
999	6
1000	4
1001	2
1002	3
1003	2
1004	5
1005	2
1007	3
1008	5
1009	6
1010	3
1011	4
1012	3
1013	2
1014	3
1015	4
1016	1
1017	3
1018	4
1019	3
1020	2
1021	1
1022	1
1023	3
1024	2
1025	4
1026	2
1027	2
1029	1
1030	5
1031	4
1032	3
1033	2
1034	1
1035	1
1036	1
1037	1
1039	1
1040	1
1041	1
1042	1
1043	2
1044	1
1045	4
1046	3
1047	4
1048	1
1049	2
1050	4
1051	1
1052	3
1053	5
1055	1
1056	1
1057	3
1058	5
1059	4
1060	1
1061	1
1062	4
1064	6
1065	4
1066	1
1067	2
1068	5
1069	1
1070	1
1071	1
1072	1
1073	1
1074	3
1075	1
1076	3
1077	3
1078	2
1079	7
1080	1
1081	3
1082	3
1083	2
1085	1
1086	4
1087	4
1088	4
1089	1
1090	2
1091	2
1093	2
1094	3
1095	1
1096	1
1097	4
1098	5
1099	3
1100	2
1101	2
1102	1
1104	2
1105	1
1106	1
1107	4
1108	2
1109	1
1110	5
1112	1
1114	2
1115	2
1116	2
1117	2
1118	2
1119	4
1120	2
1122	2
1123	1
1125	2
1126	2
1127	2
1128	1
1129	1
1130	1
1131	6
1132	2
1133	2
1135	2
1136	2
1137	4
1138	2
1139	1
1140	2
1142	4
1143	1
1146	1
1147	2
1148	2
1149	2
1150	2
1151	1
1152	2
1153	3
1154	2
1155	3
1156	3
1157	2
1158	3
1159	1
1160	2
1162	2
1163	2
1165	1
1166	2
1167	6
1168	2
1171	2
1172	2
1174	1
1175	3
1176	1
1177	1
1178	1
1180	3
1181	3
1182	1
1184	1
1185	4
1186	2
1187	2
1188	1
1189	1
1190	2
1191	2
1192	1
1193	2
1194	2
1195	2
1196	3
1197	4
1198	1
1199	1
1200	2
1201	3
1202	3
1203	3
1204	1
1205	3
1206	2
1207	2
1209	3
1210	2
1211	2
1212	1
1213	3
1214	3
1215	4
1216	1
1218	1
1219	2
1221	2
1222	2
1223	3
1224	3
1225	2
1226	5
1227	3
1228	1
1229	2
1230	1
1231	3
1232	2
1234	3
1236	2
1238	1
1239	3
1240	2
1244	6
1245	1
1246	2
1247	1
1249	1
1250	1
1251	1
1252	2
1253	2
1255	3
1258	2
1259	4
1260	1
1262	1
1263	2
1264	3
1265	1
1266	3
1267	3
1268	1
1270	2
1272	3
1273	3
1274	1
1275	4
1276	1
1277	1
1279	2
1280	1
1283	2
1286	1
1287	2
1288	2
1289	2
1290	2
1291	1
1295	1
1297	3
1298	2
1300	1
1301	1
1302	1
1303	1
1304	4
1305	1
1306	2
1307	1
1308	2
1310	3
1311	2
1313	3
1314	1
1315	2
1316	1
1317	1
1319	3
1320	1
1323	1
1324	3
1327	2
1328	1
1329	1
1330	1
1332	1
1334	3
1336	2
1337	4
1338	1
1339	1
1340	2
1341	2
1342	1
1343	2
1344	2
1347	1
1348	1
1349	1
1352	4
1354	2
1355	2
1356	2
1357	1
1358	2
1360	2
1362	2
1363	3
1364	3
1365	1
1367	1
1370	3
1374	2
1375	1
1376	2
1377	2
1378	2
1379	2
1380	1
1382	1
1384	2
1390	1
1391	1
1393	1
1394	2
1396	2
1398	2
1399	1
1400	2
1401	1
1403	2
1405	1
1406	1
1407	1
1408	1
1409	1
1410	1
1412	3
1413	1
1414	1
1415	2
1417	2
1418	2
1421	1
1422	2
1423	1
1424	1
1426	1
1427	1
1428	1
1429	1
1430	1
1431	1
1433	1
1437	1
1438	2
1439	1
1441	4
1443	1
1445	2
1448	1
1449	2
1450	1
1451	2
1452	1
1453	2
1456	2
1457	2
1460	1
1461	1
1464	1
1465	2
1467	2
1469	1
1472	1
1473	1
1474	2
1475	2
1476	3
1477	1
1479	3
1480	2
1481	3
1482	1
1485	1
1486	1
1488	2
1491	1
1496	4
1497	1
1500	2
1502	1
1503	1
1504	2
1505	2
1506	1
1509	2
1512	1
1518	1
1522	2
1524	3
1525	1
1526	1
1527	1
1529	1
1531	4
1537	1
1541	1
1542	1
1543	1
1547	1
1550	1
1554	1
1557	1
1558	1
1559	2
1560	1
1562	1
1566	1
1567	2
1569	3
1570	1
1571	3
1572	1
1573	1
1574	1
1575	1
1579	1
1581	1
1584	1
1588	1
1589	2
1595	2
1596	1
1597	1
1599	1
1602	1
1603	1
1604	1
1607	2
1610	2
1613	2
1614	1
1617	1
1620	1
1623	1
1626	2
1630	1
1631	1
1633	1
1634	1
1635	2
1638	1
1639	1
1641	2
1644	4
1645	2
1646	2
1648	2
1649	3
1650	1
1652	1
1655	2
1661	1
1665	1
1666	1
1667	1
1668	1
1670	1
1671	1
1675	1
1676	1
1678	1
1679	1
1681	1
1685	2
1688	1
1689	1
1694	1
1697	1
1698	1
1702	3
1706	2
1707	1
1708	2
1709	1
1710	3
1711	2
1712	1
1713	1
1715	1
1718	1
1720	1
1721	1
1726	1
1728	1
1729	1
1731	2
1732	1
1733	1
1736	2
1739	1
1741	2
1745	2
1746	1
1747	1
1748	1
1749	1
1750	2
1751	1
1753	1
1759	1
1760	3
1763	1
1764	1
1765	1
1767	1
1771	1
1773	1
1777	1
1778	1
1781	1
1784	1
1786	1
1787	1
1789	1
1793	1
1802	1
1804	2
1813	3
1814	1
1815	1
1816	2
1822	1
1824	2
1825	1
1827	1
1829	2
1830	1
1832	1
1833	1
1837	1
1840	1
1842	1
1848	1
1852	1
1856	1
1857	2
1859	1
1860	1
1862	2
1866	1
1868	2
1873	1
1874	2
1875	1
1876	1
1884	1
1886	1
1888	1
1890	3
1894	1
1895	1
1897	1
1899	1
1911	1
1913	1
1915	1
1916	1
1918	1
1922	1
1926	1
1929	2
1932	1
1933	1
1936	1
1938	1
1939	1
1942	1
1945	1
1948	1
1951	2
1952	2
1957	1
1958	1
1959	1
1960	1
1961	1
1964	1
1965	2
1970	1
1972	1
1973	1
1976	1
1977	1
1980	1
1982	1
1983	1
1988	1
1990	1
1994	1
1996	1
1998	2
2002	2
2003	1
2007	1
2014	1
2019	1
2022	1
2025	1
2027	1
2044	1
2047	1
2048	1
2049	1
2054	1
2057	1
2060	1
2061	1
2065	1
2067	1
2069	1
2080	1
2082	1
2088	1
2091	1
2095	1
2103	1
2112	2
2113	1
2123	1
2124	1
2125	3
2126	1
2127	1
2131	1
2132	1
2138	1
2145	1
2146	1
2148	1
2153	1
2155	1
2164	1
2165	1
2166	2
2168	1
2169	1
2170	1
2177	1
2180	1
2190	1
2194	1
2195	1
2198	1
2201	1
2202	1
2209	1
2212	1
2223	1
2226	1
2227	1
2231	1
2233	1
2236	1
2240	1
2254	1
2255	1
2256	1
2261	1
2268	1
2272	2
2275	1
2277	1
2278	1
2280	1
2281	1
2282	1
2290	1
2309	1
2328	2
2329	1
2330	1
2333	1
2338	1
2341	1
2343	1
2351	1
2362	1
2365	1
2368	1
2375	2
2380	1
2388	1
2400	1
2405	1
2407	1
2408	1
2411	1
2414	1
2415	1
2419	1
2441	1
2454	1
2461	1
2468	1
2474	1
2496	1
2497	1
2500	1
2501	1
2510	1
2511	1
2512	1
2514	1
2525	1
2545	1
2552	1
2566	1
2571	1
2579	1
2588	1
2594	1
2597	2
2598	1
2602	1
2604	1
2605	1
2610	1
2615	1
2616	1
2617	1
2627	1
2636	1
2651	1
2652	1
2670	1
2672	1
2677	1
2718	1
2726	1
2745	2
2764	1
2767	1
2769	1
2778	1
2781	1
2794	1
2802	1
2807	1
2832	1
2839	1
2841	1
2843	1
2877	1
2883	1
2886	2
2897	1
2905	1
2906	1
2909	1
2914	1
2915	1
2917	1
2921	1
2925	1
2935	1
2941	1
2945	1
2954	1
2955	1
2969	1
2970	1
3001	1
3050	1
3051	1
3052	1
3118	1
3129	1
3149	1
3159	1
3160	1
3162	1
3164	1
3190	1
3194	1
3203	1
3206	1
3220	1
3254	1
3278	1
3298	1
3299	1
3308	1
3315	1
3319	1
3337	1
3350	1
3362	1
3369	1
3380	1
3408	1
3414	1
3415	1
3417	1
3435	1
3441	1
3461	1
3465	1
3480	1
3498	1
3504	1
3506	1
3526	2
3537	1
3554	1
3561	1
3583	1
3589	1
3597	1
3599	1
3617	1
3639	1
3642	1
3708	1
3769	1
3783	1
3804	2
3838	1
3874	1
3878	1
3893	1
3951	1
4015	1
4017	1
4023	1
4033	1
4064	1
4126	1
4167	1
4200	1
4241	1
4251	1
4262	1
4352	1
4406	1
4407	1
4474	1
4499	1
4551	1
4555	1
4583	1
4587	1
4787	1
4800	1
4889	1
4900	1
4941	1
4962	1
5058	1
5066	1
5098	1
5164	1
5229	1
5239	1
5268	1
5293	1
5296	1
5351	1
5463	1
5468	1
5482	1
5875	1
5940	1
5987	1
6265	1
6532	1
6563	1
6654	1
6928	1
6934	1
6983	1
7182	1
7189	1
7461	1
7641	1
7651	1
7794	1
7889	1
8156	1
9488	1
10039	1
10251	1
10928	1
11102	1
12426	1
12710	1
14466	1
20337	1
29713	1
778302	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
_._......_._._..____................___.._......_.__....._.._.___....._.
......._...........__........___...._._._.._....._.........._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]