Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/7505eebb7dc39b9ee0fd76e86224de/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_2.fastp.fastq.gz Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/06487f478483458573b9f5b1215d3c/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/06487f478483458573b9f5b1215d3c/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/7505eebb7dc39b9ee0fd76e86224de/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_1.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/5f13583f2c39266d5f3126fc8e3caa/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.Chimeric.out.junction ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.zvwEETnrkn/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary -sample contains 188970318 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir -J /tmp/nxf.zvwEETnrkn/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.Chimeric.out.junction -O /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.zvwEETnrkn/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=75000.00/min [20000], rate=75000.00/min [30000], rate=78260.87/min [40000], rate=82758.62/min [50000], rate=85714.29/min [60000], rate=90000.00/min [70000], rate=93333.33/min [80000], rate=94117.65/min [90000], rate=88524.59/min [100000], rate=81081.08/min [110000], rate=75862.07/min [120000], rate=73469.39/min [130000], rate=71559.63/min [140000], rate=70000.00/min [150000], rate=68702.29/min [160000], rate=68085.11/min [170000], rate=67549.67/min [180000], rate=67924.53/min [190000], rate=67857.14/min [200000], rate=68181.82/min [210000], rate=68852.46/min [220000], rate=69841.27/min [230000], rate=70408.16/min [240000], rate=71287.13/min [250000], rate=72463.77/min [260000], rate=73239.44/min [270000], rate=73636.36/min [280000], rate=74336.28/min [290000], rate=75000.00/min [300000], rate=75630.25/min [310000], rate=76543.21/min [320000], rate=77108.43/min [330000], rate=77952.76/min [340000], rate=78461.54/min [350000], rate=79245.28/min [360000], rate=77142.86/min [370000], rate=76027.40/min [380000], rate=75000.00/min [390000], rate=74285.71/min [400000], rate=73619.63/min [410000], rate=73214.29/min [420000], rate=72413.79/min [430000], rate=71270.72/min [440000], rate=70777.48/min [450000], rate=69948.19/min [460000], rate=69346.73/min [470000], rate=69117.65/min [480000], rate=69064.75/min [490000], rate=69014.08/min [500000], rate=69124.42/min [510000], rate=69230.77/min [520000], rate=69487.75/min [530000], rate=69736.84/min [540000], rate=70742.36/min [550000], rate=71120.69/min [560000], rate=71489.36/min [570000], rate=71848.74/min [580000], rate=72349.27/min [590000], rate=72839.51/min [600000], rate=73319.76/min [610000], rate=73790.32/min [620000], rate=74251.50/min [630000], rate=73684.21/min [640000], rate=73142.86/min [650000], rate=72490.71/min [660000], rate=71739.13/min [670000], rate=71276.60/min [680000], rate=70833.33/min [690000], rate=70648.46/min [700000], rate=70469.80/min [710000], rate=69950.74/min [720000], rate=69565.22/min [730000], rate=69413.63/min [740000], rate=68837.21/min [750000], rate=68912.71/min [760000], rate=68778.28/min [770000], rate=68647.85/min [780000], rate=68722.47/min [790000], rate=68398.27/min [800000], rate=68473.61/min [810000], rate=68450.70/min [820000], rate=68333.33/min [830000], rate=68219.18/min [840000], rate=68200.27/min [850000], rate=68000.00/min [860000], rate=68073.88/min [870000], rate=68324.61/min [880000], rate=68571.43/min [890000], rate=68725.87/min [900000], rate=68877.55/min [910000], rate=69026.55/min [920000], rate=69172.93/min [930000], rate=69402.99/min [940000], rate=69629.63/min [950000], rate=69938.65/min [960000], rate=70243.90/min [970000], rate=70460.05/min [980000], rate=70758.12/min [990000], rate=70295.86/min [1000000], rate=69284.06/min [1010000], rate=69020.50/min [1020000], rate=68686.87/min [1030000], rate=68438.54/min [1040000], rate=68047.98/min [1050000], rate=67814.85/min [1060000], rate=67659.57/min [1070000], rate=67507.89/min [1080000], rate=67570.39/min [1090000], rate=67561.98/min [1100000], rate=67073.17/min [1110000], rate=67204.84/min [1120000], rate=67402.21/min [1130000], rate=67597.21/min [1140000], rate=67992.05/min [1150000], rate=68452.38/min [1160000], rate=68774.70/min [1170000], rate=69230.77/min [1180000], rate=69616.52/min [1190000], rate=70000.00/min [1200000], rate=70312.50/min [1210000], rate=70485.44/min [1220000], rate=70724.64/min [1230000], rate=70554.49/min [1240000], rate=69990.59/min [1250000], rate=69702.60/min [1260000], rate=69357.80/min [1270000], rate=69209.81/min [1280000], rate=69126.91/min [1290000], rate=68983.96/min [1300000], rate=69087.69/min [1310000], rate=68826.62/min [1320000], rate=68750.00/min [1330000], rate=68793.10/min [1340000], rate=68776.73/min [1350000], rate=67839.20/min [1360000], rate=67493.80/min [1370000], rate=67821.78/min [1380000], rate=67924.53/min [1390000], rate=68081.63/min [1400000], rate=68237.21/min [1410000], rate=68115.94/min [1420000], rate=68214.57/min [1430000], rate=67987.32/min [1440000], rate=67817.90/min [1450000], rate=67704.28/min [1460000], rate=67697.06/min [1470000], rate=66666.67/min [1480000], rate=65729.09/min [1490000], rate=65255.47/min [1500000], rate=64469.91/min [1510000], rate=64300.92/min [1520000], rate=64361.33/min [1530000], rate=64421.05/min [1540000], rate=64570.23/min [1550000], rate=64673.16/min [1560000], rate=64775.09/min [1570000], rate=65010.35/min [1580000], rate=65199.45/min [1590000], rate=65342.47/min [1600000], rate=65484.31/min -building interval tree based on /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=54545.45/min [20000], rate=54545.45/min [30000], rate=54545.45/min [40000], rate=54545.45/min [50000], rate=57692.31/min [60000], rate=59016.39/min [70000], rate=58333.33/min [80000], rate=59259.26/min [90000], rate=60674.16/min [100000], rate=61224.49/min [110000], rate=62857.14/min [120000], rate=64285.71/min [130000], rate=65000.00/min [140000], rate=66141.73/min [150000], rate=67164.18/min [160000], rate=68085.11/min [170000], rate=69387.76/min [180000], rate=70588.24/min [190000], rate=71698.11/min [200000], rate=73619.63/min [210000], rate=75000.00/min [220000], rate=76300.58/min [230000], rate=77528.09/min [240000], rate=79558.01/min [250000], rate=79365.08/min [260000], rate=76847.29/min [270000], rate=74654.38/min [280000], rate=72413.79/min [290000], rate=70445.34/min [300000], rate=68702.29/min [310000], rate=67636.36/min [320000], rate=66666.67/min [330000], rate=65780.73/min [340000], rate=65175.72/min [350000], rate=64615.38/min [360000], rate=64094.96/min [370000], rate=63068.18/min [380000], rate=62465.75/min [390000], rate=62234.04/min [400000], rate=62337.66/min [410000], rate=62278.48/min [420000], rate=62376.24/min [430000], rate=62469.73/min [440000], rate=62559.24/min [450000], rate=62645.01/min [460000], rate=62727.27/min [470000], rate=62946.43/min [480000], rate=63157.89/min [490000], rate=63362.07/min [500000], rate=63694.27/min [510000], rate=64016.74/min [520000], rate=64462.81/min [530000], rate=65163.93/min [540000], rate=65587.04/min [550000], rate=66000.00/min [560000], rate=66534.65/min [570000], rate=66796.88/min [580000], rate=67311.41/min [590000], rate=67686.42/min [600000], rate=68311.20/min [610000], rate=68667.92/min [620000], rate=69144.98/min [630000], rate=69104.20/min [640000], rate=69064.75/min [650000], rate=69271.76/min [660000], rate=69473.68/min [670000], rate=69670.71/min [680000], rate=69982.85/min [690000], rate=70288.62/min [700000], rate=70588.24/min [710000], rate=71000.00/min [720000], rate=71052.63/min [730000], rate=70873.79/min [740000], rate=70926.52/min [750000], rate=71202.53/min [760000], rate=71361.50/min [770000], rate=71517.03/min [780000], rate=71889.40/min [790000], rate=72699.39/min [800000], rate=73394.50/min [810000], rate=73413.90/min [820000], rate=73542.60/min [830000], rate=73997.03/min [840000], rate=74446.09/min [850000], rate=75332.35/min [860000], rate=76106.19/min [870000], rate=75872.09/min [880000], rate=75862.07/min [890000], rate=75423.73/min [900000], rate=75842.70/min [910000], rate=76150.63/min [920000], rate=76560.33/min [930000], rate=77392.51/min [940000], rate=78116.34/min [950000], rate=78620.69/min [960000], rate=79012.35/min [970000], rate=79399.73/min [980000], rate=79674.80/min [990000], rate=80378.89/min [1000000], rate=81081.08/min [1010000], rate=81124.50/min [1020000], rate=81274.90/min [1030000], rate=80890.05/min [1040000], rate=81250.00/min [1050000], rate=81395.35/min [1060000], rate=81748.07/min [1070000], rate=81992.34/min [1080000], rate=82337.99/min [1090000], rate=83100.38/min [1100000], rate=83756.35/min [1110000], rate=83984.87/min [1120000], rate=84105.13/min [1130000], rate=84119.11/min [1140000], rate=84236.45/min [1150000], rate=84352.08/min [1160000], rate=84774.67/min [1170000], rate=84987.89/min [1180000], rate=85096.15/min [1190000], rate=85000.00/min [1200000], rate=84705.88/min [1210000], rate=84615.38/min [1220000], rate=84820.39/min [1230000], rate=84827.59/min [1240000], rate=84834.66/min [1250000], rate=85034.01/min [1260000], rate=85135.14/min [1270000], rate=85234.90/min [1280000], rate=85333.33/min [1290000], rate=84868.42/min [1300000], rate=83155.65/min [1310000], rate=81619.94/min [1320000], rate=80000.00/min [1330000], rate=78931.75/min [1340000], rate=78286.27/min [1350000], rate=77437.86/min [1360000], rate=76619.72/min [1370000], rate=75690.61/min [1380000], rate=74594.59/min [1390000], rate=73609.89/min [1400000], rate=72727.27/min [1410000], rate=72184.30/min [1420000], rate=71777.59/min [1430000], rate=71500.00/min [1440000], rate=71052.63/min [1450000], rate=70445.34/min [1460000], rate=70023.98/min [1470000], rate=69014.08/min [1480000], rate=68307.69/min [1490000], rate=68296.41/min [1500000], rate=68337.13/min [1510000], rate=68429.00/min [1520000], rate=68519.91/min [1530000], rate=68661.18/min [1540000], rate=68750.00/min [1550000], rate=68432.67/min [1560000], rate=67924.53/min [1570000], rate=67381.97/min [1580000], rate=66201.12/min [1590000], rate=65253.08/min [1600000], rate=64646.46/min [1610000], rate=64529.06/min -building interval tree based on /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=50000.00/min [20000], rate=54545.45/min [30000], rate=60000.00/min [40000], rate=63157.89/min [50000], rate=66666.67/min [60000], rate=69230.77/min [70000], rate=71186.44/min [80000], rate=72727.27/min [90000], rate=72972.97/min [100000], rate=75000.00/min [110000], rate=77647.06/min [120000], rate=80898.88/min [130000], rate=84782.61/min [140000], rate=82352.94/min [150000], rate=81081.08/min [160000], rate=80000.00/min [170000], rate=78461.54/min [180000], rate=77142.86/min [190000], rate=77027.03/min [200000], rate=76923.08/min [210000], rate=77300.61/min [220000], rate=77647.06/min [230000], rate=77966.10/min [240000], rate=78688.52/min [250000], rate=79365.08/min [260000], rate=80829.02/min [270000], rate=82653.06/min [280000], rate=83582.09/min [290000], rate=84466.02/min [300000], rate=83333.33/min [310000], rate=81222.71/min [320000], rate=79338.84/min [330000], rate=77042.80/min [340000], rate=74725.27/min [350000], rate=74204.95/min [360000], rate=74226.80/min [370000], rate=73026.32/min [380000], rate=72151.90/min [390000], rate=71124.62/min [400000], rate=70588.24/min [410000], rate=70285.71/min [420000], rate=70000.00/min [430000], rate=69729.73/min [440000], rate=69291.34/min [450000], rate=68877.55/min [460000], rate=68656.72/min [470000], rate=68613.14/min [480000], rate=68571.43/min [490000], rate=68531.47/min [500000], rate=68493.15/min [510000], rate=68303.57/min [520000], rate=68271.33/min [530000], rate=68094.22/min [540000], rate=68210.53/min [550000], rate=68181.82/min [560000], rate=68016.19/min [570000], rate=67722.77/min [580000], rate=67704.28/min [590000], rate=67557.25/min [600000], rate=67542.21/min [610000], rate=67652.50/min [620000], rate=67513.61/min [630000], rate=67379.68/min [640000], rate=67605.63/min [650000], rate=67590.99/min [660000], rate=67692.31/min [670000], rate=67790.89/min [680000], rate=67886.86/min [690000], rate=67868.85/min [700000], rate=68071.31/min [710000], rate=68051.12/min [720000], rate=68246.45/min [730000], rate=68544.60/min [740000], rate=68837.21/min [750000], rate=69124.42/min [760000], rate=69300.91/min [770000], rate=68141.59/min [780000], rate=66952.79/min [790000], rate=65379.31/min [800000], rate=64429.53/min [810000], rate=63863.34/min [820000], rate=63239.07/min [830000], rate=62799.50/min [840000], rate=61992.62/min [850000], rate=61519.90/min [860000], rate=60920.90/min [870000], rate=60346.82/min [880000], rate=60136.67/min [890000], rate=59932.66/min [900000], rate=59734.51/min [910000], rate=59541.98/min [920000], rate=59227.47/min [930000], rate=58922.91/min [940000], rate=58750.00/min [950000], rate=58581.71/min [960000], rate=58123.11/min [970000], rate=58025.92/min [980000], rate=57534.25/min [990000], rate=57669.90/min [1000000], rate=57692.31/min [1010000], rate=57769.30/min [1020000], rate=57790.37/min [1030000], rate=57865.17/min [1040000], rate=57884.97/min [1050000], rate=58171.75/min [1060000], rate=58241.76/min [1070000], rate=58416.74/min [1080000], rate=58221.02/min [1090000], rate=57469.24/min [1100000], rate=57341.44/min [1110000], rate=56971.77/min [1120000], rate=56997.46/min [1130000], rate=57070.71/min [1140000], rate=57238.49/min [1150000], rate=57261.41/min [1160000], rate=57236.84/min [1170000], rate=57259.38/min [1180000], rate=57281.55/min [1190000], rate=57074.34/min [1200000], rate=57188.24/min [1210000], rate=57210.40/min [1220000], rate=57053.78/min [1230000], rate=57032.46/min [1240000], rate=56024.10/min [1250000], rate=55147.06/min [1260000], rate=54077.25/min [1270000], rate=53699.79/min [1280000], rate=53819.20/min [1290000], rate=53899.72/min [1300000], rate=54016.62/min [1310000], rate=54206.90/min [1320000], rate=54320.99/min [1330000], rate=54470.99/min [1340000], rate=54656.70/min [1350000], rate=54803.79/min [1360000], rate=54618.47/min [1370000], rate=54257.43/min [1380000], rate=53871.18/min [1390000], rate=53427.29/min [1400000], rate=53030.30/min [1410000], rate=52710.28/min [1420000], rate=52334.15/min [1430000], rate=52477.06/min [1440000], rate=52715.07/min [1450000], rate=52855.41/min [1460000], rate=52994.56/min [1470000], rate=53132.53/min [1480000], rate=53301.32/min [1490000], rate=53468.90/min [1500000], rate=53097.35/min [1510000], rate=52613.24/min [1520000], rate=52203.78/min [1530000], rate=51747.46/min [1540000], rate=51419.03/min [1550000], rate=51070.84/min [1560000], rate=50786.76/min [1570000], rate=50509.38/min [1580000], rate=49894.74/min [1590000], rate=49074.07/min [1600000], rate=48979.59/min -building interval tree based on /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=150000.00/min [20000], rate=120000.00/min [30000], rate=138461.54/min [40000], rate=126315.79/min [50000], rate=142857.14/min [60000], rate=150000.00/min [70000], rate=155555.56/min [80000], rate=177777.78/min [90000], rate=186206.90/min [100000], rate=181818.18/min [110000], rate=173684.21/min [120000], rate=171428.57/min [130000], rate=165957.45/min [140000], rate=168000.00/min [150000], rate=169811.32/min [160000], rate=171428.57/min [170000], rate=182142.86/min [180000], rate=183050.85/min [190000], rate=180952.38/min [200000], rate=173913.04/min [210000], rate=172602.74/min [220000], rate=171428.57/min [230000], rate=174683.54/min [240000], rate=175609.76/min [250000], rate=178571.43/min [260000], rate=177272.73/min [270000], rate=176086.96/min [280000], rate=171428.57/min [290000], rate=172277.23/min [300000], rate=171428.57/min [310000], rate=173831.78/min [320000], rate=172972.97/min [330000], rate=175221.24/min [340000], rate=152238.81/min [350000], rate=129629.63/min [360000], rate=118681.32/min [370000], rate=109900.99/min [380000], rate=102242.15/min [390000], rate=95510.20/min [400000], rate=87912.09/min [410000], rate=81188.12/min [420000], rate=76363.64/min [430000], rate=72881.36/min [440000], rate=70212.77/min [450000], rate=66997.52/min [460000], rate=65248.23/min [470000], rate=63513.51/min [480000], rate=62068.97/min [490000], rate=60618.56/min [500000], rate=59642.15/min [510000], rate=58959.54/min [520000], rate=58426.97/min [530000], rate=57923.50/min [540000], rate=57651.25/min [550000], rate=57192.37/min [560000], rate=57045.84/min [570000], rate=56905.16/min [580000], rate=56862.75/min [590000], rate=56640.00/min [600000], rate=55900.62/min [610000], rate=55203.62/min [620000], rate=54948.30/min [630000], rate=54782.61/min [640000], rate=54700.85/min [650000], rate=54393.31/min [660000], rate=53804.35/min [670000], rate=53743.32/min [680000], rate=53825.86/min [690000], rate=53836.15/min [700000], rate=53915.28/min [710000], rate=53924.05/min [720000], rate=54000.00/min [730000], rate=54074.07/min [740000], rate=54146.34/min [750000], rate=54347.83/min [760000], rate=54610.78/min [770000], rate=54804.27/min [780000], rate=54994.12/min [790000], rate=55116.28/min [800000], rate=55427.25/min [810000], rate=55733.94/min [820000], rate=55972.70/min [830000], rate=56334.84/min [840000], rate=56312.85/min [850000], rate=55194.81/min [860000], rate=54545.45/min [870000], rate=54149.38/min [880000], rate=53604.06/min [890000], rate=53614.46/min [900000], rate=53784.86/min [910000], rate=53952.57/min [920000], rate=54011.74/min [930000], rate=54122.21/min [940000], rate=54282.96/min [950000], rate=54441.26/min [960000], rate=54648.96/min [970000], rate=54853.91/min [980000], rate=55056.18/min [990000], rate=55204.46/min [1000000], rate=55452.87/min [1010000], rate=55749.77/min [1020000], rate=55992.68/min [1030000], rate=56232.94/min [1040000], rate=55614.97/min [1050000], rate=54263.57/min [1060000], rate=52736.32/min [1070000], rate=51941.75/min [1080000], rate=51184.83/min [1090000], rate=51014.04/min [1100000], rate=50847.46/min [1110000], rate=50569.48/min [1120000], rate=50412.60/min [1130000], rate=50334.08/min [1140000], rate=50331.13/min [1150000], rate=50036.26/min [1160000], rate=49396.74/min [1170000], rate=48547.72/min [1180000], rate=47805.54/min [1190000], rate=47097.63/min [1200000], rate=46692.61/min [1210000], rate=46242.04/min [1220000], rate=45692.88/min [1230000], rate=45387.45/min [1240000], rate=45173.04/min [1250000], rate=44991.00/min [1260000], rate=44760.21/min [1270000], rate=44587.48/min [1280000], rate=44470.18/min [1290000], rate=44355.30/min [1300000], rate=44092.71/min [1310000], rate=43886.10/min [1320000], rate=43781.09/min [1330000], rate=43702.08/min [1340000], rate=43272.34/min [1350000], rate=42948.04/min [1360000], rate=42902.21/min [1370000], rate=42901.88/min [1380000], rate=42879.34/min [1390000], rate=42879.18/min [1400000], rate=42857.14/min [1410000], rate=42965.97/min [1420000], rate=43052.05/min [1430000], rate=43158.95/min [1440000], rate=43286.57/min [1450000], rate=43413.17/min [1460000], rate=43560.42/min [1470000], rate=43706.64/min [1480000], rate=43873.52/min [1490000], rate=44039.41/min [1500000], rate=44269.55/min [1510000], rate=44390.00/min [1520000], rate=44553.00/min [1530000], rate=44671.53/min [1540000], rate=44702.47/min [1550000], rate=44819.28/min [1560000], rate=44956.77/min [1570000], rate=45114.94/min [1580000], rate=45293.84/min [1590000], rate=45450.21/min [1600000], rate=45476.08/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir --filt_file /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 6000000.00 reads per min processed... 12000000.00 reads per min processed... 9000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 5142857.14 reads per min processed... 4666666.67 reads per min processed... 4363636.36 reads per min processed... 4500000.00 reads per min processed... 4285714.29 reads per min processed... 4125000.00 reads per min processed... 4000000.00 reads per min processed... 4105263.16 reads per min processed... 4000000.00 reads per min processed... 3913043.48 reads per min processed... 4000000.00 reads per min processed... 3923076.92 reads per min processed... 3724137.93 reads per min processed... 3677419.35 reads per min processed... 3636363.64 reads per min processed... 3600000.00 reads per min processed... 3666666.67 reads per min processed... 3631578.95 reads per min processed... 3600000.00 reads per min processed... 3571428.57 reads per min processed... 3627906.98 reads per min processed... 3600000.00 reads per min processed... 3574468.09 reads per min processed... 3551020.41 reads per min processed... 3529411.76 reads per min processed... 3576923.08 reads per min processed... 3555555.56 reads per min processed... 3535714.29 reads per min processed... 3642857.14 reads per min processed... 3684210.53 reads per min processed... 3724137.93 reads per min processed... 3762711.86 reads per min processed... 3737704.92 reads per min processed... 3714285.71 reads per min processed... 3750000.00 reads per min processed... 3727272.73 reads per min processed... 3705882.35 reads per min processed... 3685714.29 reads per min processed... 3718309.86 reads per min processed... 3698630.14 reads per min processed... 3729729.73 reads per min processed... 3710526.32 reads per min processed... 3692307.69 reads per min processed... 3675000.00 reads per min processed... 3658536.59 reads per min processed... 3686746.99 reads per min processed... 3670588.24 reads per min processed... 3655172.41 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.zvwEETnrkn/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -159174.009269 EM: Round [1] log likelihood: -159048.609928 EM: Round [2] log likelihood: -158999.385365 EM: Round [3] log likelihood: -158975.334309 EM: Round [4] log likelihood: -158962.361496 EM: Round [5] log likelihood: -158954.962848 EM: Round [6] log likelihood: -158950.564923 EM: Round [7] log likelihood: -158947.848169 EM: Round [8] log likelihood: -158946.104356 EM: Round [9] log likelihood: -158944.942066 EM: Round [10] log likelihood: -158944.138901 EM: Round [11] log likelihood: -158943.564736 EM: Round [12] log likelihood: -158943.141109 EM: Round [13] log likelihood: -158942.819309 EM: Round [14] log likelihood: -158942.568239 EM: Round [15] log likelihood: -158942.367532 EM: Round [16] log likelihood: -158942.203520 EM: Round [17] log likelihood: -158942.066827 EM: Round [18] log likelihood: -158941.950887 EM: Round [19] log likelihood: -158941.851012 EM: Round [20] log likelihood: -158941.763795 EM: Round [21] log likelihood: -158941.686718 EM: Round [22] log likelihood: -158941.617887 EM: Round [23] log likelihood: -158941.555860 EM: Round [24] log likelihood: -158941.499521 EM: Round [25] log likelihood: -158941.447995 EM: Round [26] log likelihood: -158941.400586 EM: Round [27] log likelihood: -158941.356737 EM: Round [28] log likelihood: -158941.315994 EM: Round [29] log likelihood: -158941.277983 EM: Round [30] log likelihood: -158941.242395 EM: Round [31] log likelihood: -158941.208972 EM: Round [32] log likelihood: -158941.177494 EM: Round [33] log likelihood: -158941.147774 EM: Round [34] log likelihood: -158941.119653 EM: Round [35] log likelihood: -158941.092992 EM: Round [36] log likelihood: -158941.067670 EM: Round [37] log likelihood: -158941.043582 EM: Round [38] log likelihood: -158941.020634 EM: Round [39] log likelihood: -158940.998744 EM: Round [40] log likelihood: -158940.977837 EM: Round [41] log likelihood: -158940.957849 EM: Round [42] log likelihood: -158940.938719 EM: Round [43] log likelihood: -158940.920394 EM: Round [44] log likelihood: -158940.902825 EM: Round [45] log likelihood: -158940.885968 EM: Round [46] log likelihood: -158940.869782 EM: Round [47] log likelihood: -158940.854229 EM: Round [48] log likelihood: -158940.839277 EM: Round [49] log likelihood: -158940.824893 EM: Round [50] log likelihood: -158940.811048 EM: Round [51] log likelihood: -158940.797715 EM: Round [52] log likelihood: -158940.784869 EM: Round [53] log likelihood: -158940.772487 EM: Round [54] log likelihood: -158940.760546 EM: Round [55] log likelihood: -158940.749026 EM: Round [56] log likelihood: -158940.737909 EM: Round [57] log likelihood: -158940.727176 EM: Round [58] log likelihood: -158940.716811 EM: Round [59] log likelihood: -158940.706797 EM: Round [60] log likelihood: -158940.697120 EM: Round [61] log likelihood: -158940.687766 EM: Round [62] log likelihood: -158940.678721 EM: Round [63] log likelihood: -158940.669973 EM: Round [64] log likelihood: -158940.661510 EM: Round [65] log likelihood: -158940.653321 EM: Round [66] log likelihood: -158940.645394 EM: Round [67] log likelihood: -158940.637721 EM: Round [68] log likelihood: -158940.630291 EM: Round [69] log likelihood: -158940.623094 EM: Round [70] log likelihood: -158940.616124 EM: Round [71] log likelihood: -158940.609370 EM: Round [72] log likelihood: -158940.602825 EM: Round [73] log likelihood: -158940.596481 EM: Round [74] log likelihood: -158940.590332 EM: Round [75] log likelihood: -158940.584370 EM: Round [76] log likelihood: -158940.578589 EM: Round [77] log likelihood: -158940.572982 EM: Round [78] log likelihood: -158940.567544 EM: Round [79] log likelihood: -158940.562268 EM: Round [80] log likelihood: -158940.557150 EM: Round [81] log likelihood: -158940.552183 EM: Round [82] log likelihood: -158940.547362 EM: Round [83] log likelihood: -158940.542684 EM: Round [84] log likelihood: -158940.538142 EM: Round [85] log likelihood: -158940.533733 EM: Round [86] log likelihood: -158940.529452 EM: Round [87] log likelihood: -158940.525295 EM: Round [88] log likelihood: -158940.521258 EM: Round [89] log likelihood: -158940.517337 EM: Round [90] log likelihood: -158940.513528 EM: Round [91] log likelihood: -158940.509829 EM: Round [92] log likelihood: -158940.506234 EM: Round [93] log likelihood: -158940.502742 EM: Round [94] log likelihood: -158940.499348 EM: Round [95] log likelihood: -158940.496051 EM: Round [96] log likelihood: -158940.492846 EM: Round [97] log likelihood: -158940.489731 EM: Round [98] log likelihood: -158940.486703 EM: Round [99] log likelihood: -158940.483760 EM: Round [100] log likelihood: -158940.480899 EM: Round [101] log likelihood: -158940.478117 EM: Round [102] log likelihood: -158940.475412 EM: Round [103] log likelihood: -158940.472782 EM: Round [104] log likelihood: -158940.470224 EM: Round [105] log likelihood: -158940.467736 EM: Round [106] log likelihood: -158940.465317 EM: Round [107] log likelihood: -158940.462964 EM: Round [108] log likelihood: -158940.460675 EM: Round [109] log likelihood: -158940.458448 EM: Round [110] log likelihood: -158940.456282 EM: Round [111] log likelihood: -158940.454175 EM: Round [112] log likelihood: -158940.452124 EM: Round [113] log likelihood: -158940.450129 EM: Round [114] log likelihood: -158940.448187 EM: Round [115] log likelihood: -158940.446298 EM: Round [116] log likelihood: -158940.444459 EM: Round [117] log likelihood: -158940.442670 EM: Round [118] log likelihood: -158940.440928 EM: Round [119] log likelihood: -158940.439233 EM: Round [120] log likelihood: -158940.437582 EM: Round [121] log likelihood: -158940.435976 EM: Round [122] log likelihood: -158940.434412 EM: Round [123] log likelihood: -158940.432889 EM: Round [124] log likelihood: -158940.431407 EM: Round [125] log likelihood: -158940.429963 EM: Round [126] log likelihood: -158940.428558 EM: Round [127] log likelihood: -158940.427189 EM: Round [128] log likelihood: -158940.425856 EM: Round [129] log likelihood: -158940.424558 EM: Round [130] log likelihood: -158940.423294 EM: Round [131] log likelihood: -158940.422062 EM: Round [132] log likelihood: -158940.420863 EM: Round [133] log likelihood: -158940.419695 EM: Round [134] log likelihood: -158940.418556 EM: Round [135] log likelihood: -158940.417448 EM: Round [136] log likelihood: -158940.416368 EM: Round [137] log likelihood: -158940.415315 EM: Round [138] log likelihood: -158940.414290 EM: Round [139] log likelihood: -158940.413291 EM: Round [140] log likelihood: -158940.412318 EM: Round [141] log likelihood: -158940.411369 EM: Round [142] log likelihood: -158940.410445 EM: Round [143] log likelihood: -158940.409544 EM: Round [144] log likelihood: -158940.408666 EM: Round [145] log likelihood: -158940.407810 EM: Round [146] log likelihood: -158940.406976 EM: Round [147] log likelihood: -158940.406163 EM: Round [148] log likelihood: -158940.405370 EM: Round [149] log likelihood: -158940.404598 EM: Round [150] log likelihood: -158940.403844 EM: Round [151] log likelihood: -158940.403110 EM: Round [152] log likelihood: -158940.402394 EM: Round [153] log likelihood: -158940.401696 EM: Round [154] log likelihood: -158940.401016 EM: Round [155] log likelihood: -158940.400352 EM: Round [156] log likelihood: -158940.399705 EM: Round [157] log likelihood: -158940.399074 EM: Round [158] log likelihood: -158940.398458 EM: Round [159] log likelihood: -158940.397858 EM: Round [160] log likelihood: -158940.397272 EM: Round [161] log likelihood: -158940.396701 EM: Round [162] log likelihood: -158940.396144 EM: Round [163] log likelihood: -158940.395601 EM: Round [164] log likelihood: -158940.395071 EM: Round [165] log likelihood: -158940.394554 EM: Round [166] log likelihood: -158940.394049 EM: Round [167] log likelihood: -158940.393557 EM: Round [168] log likelihood: -158940.393077 EM: Round [169] log likelihood: -158940.392608 EM: Round [170] log likelihood: -158940.392151 EM: Round [171] log likelihood: -158940.391705 EM: Round [172] log likelihood: -158940.391269 EM: Round [173] log likelihood: -158940.390844 EM: Round [174] log likelihood: -158940.390430 EM: Round [175] log likelihood: -158940.390025 EM: Round [176] log likelihood: -158940.389630 EM: Round [177] log likelihood: -158940.389244 EM: Round [178] log likelihood: -158940.388868 EM: Round [179] log likelihood: -158940.388500 EM: Round [180] log likelihood: -158940.388141 EM: Round [181] log likelihood: -158940.387791 EM: Round [182] log likelihood: -158940.387449 EM: Round [183] log likelihood: -158940.387115 EM: Round [184] log likelihood: -158940.386789 EM: Round [185] log likelihood: -158940.386471 EM: Round [186] log likelihood: -158940.386160 EM: Round [187] log likelihood: -158940.385856 EM: Round [188] log likelihood: -158940.385560 EM: Round [189] log likelihood: -158940.385270 EM: Round [190] log likelihood: -158940.384987 EM: Round [191] log likelihood: -158940.384711 EM: Round [192] log likelihood: -158940.384441 EM: Round [193] log likelihood: -158940.384178 EM: Round [194] log likelihood: -158940.383920 EM: Round [195] log likelihood: -158940.383669 EM: Round [196] log likelihood: -158940.383423 EM: Round [197] log likelihood: -158940.383183 EM: Round [198] log likelihood: -158940.382948 EM: Round [199] log likelihood: -158940.382719 EM: Round [200] log likelihood: -158940.382495 EM: Round [201] log likelihood: -158940.382276 EM: Round [202] log likelihood: -158940.382062 EM: Round [203] log likelihood: -158940.381853 EM: Round [204] log likelihood: -158940.381648 EM: Round [205] log likelihood: -158940.381449 EM: Round [206] log likelihood: -158940.381253 EM: Round [207] log likelihood: -158940.381062 EM: Round [208] log likelihood: -158940.380876 EM: Round [209] log likelihood: -158940.380693 EM: Round [210] log likelihood: -158940.380515 EM: Round [211] log likelihood: -158940.380341 EM: Round [212] log likelihood: -158940.380170 EM: Round [213] log likelihood: -158940.380004 EM: Round [214] log likelihood: -158940.379841 EM: Round [215] log likelihood: -158940.379681 EM: Round [216] log likelihood: -158940.379525 EM: Round [217] log likelihood: -158940.379373 EM: Round [218] log likelihood: -158940.379224 EM: Round [219] log likelihood: -158940.379078 EM: Round [220] log likelihood: -158940.378935 EM: Round [221] log likelihood: -158940.378796 EM: Round [222] log likelihood: -158940.378659 EM: Round [223] log likelihood: -158940.378526 EM: Round [224] log likelihood: -158940.378395 EM: Round [225] log likelihood: -158940.378267 EM: Round [226] log likelihood: -158940.378142 EM: Round [227] log likelihood: -158940.378020 EM: Round [228] log likelihood: -158940.377900 EM: Round [229] log likelihood: -158940.377783 EM: Round [230] log likelihood: -158940.377669 EM: Round [231] log likelihood: -158940.377556 EM: Round [232] log likelihood: -158940.377447 EM: Round [233] log likelihood: -158940.377339 EM: Round [234] log likelihood: -158940.377234 EM: Round [235] log likelihood: -158940.377131 EM: Round [236] log likelihood: -158940.377030 EM: Round [237] log likelihood: -158940.376932 EM: Stopping iterations at round 237 due to insufficient improvement in likelihood. EM: Starting log likelihood: -159047.538108 EM: Round [1] log likelihood: -158940.154380 EM: Round [2] log likelihood: -158899.934024 EM: Round [3] log likelihood: -158881.138071 EM: Round [4] log likelihood: -158871.297712 EM: Round [5] log likelihood: -158865.778856 EM: Round [6] log likelihood: -158862.525302 EM: Round [7] log likelihood: -158860.519869 EM: Round [8] log likelihood: -158859.228711 EM: Round [9] log likelihood: -158858.361258 EM: Round [10] log likelihood: -158857.754376 EM: Round [11] log likelihood: -158857.313556 EM: Round [12] log likelihood: -158856.982261 EM: Round [13] log likelihood: -158856.725572 EM: Round [14] log likelihood: -158856.521248 EM: Round [15] log likelihood: -158856.354701 EM: Round [16] log likelihood: -158856.216101 EM: Round [17] log likelihood: -158856.098650 EM: Round [18] log likelihood: -158855.997543 EM: Round [19] log likelihood: -158855.909305 EM: Round [20] log likelihood: -158855.831378 EM: Round [21] log likelihood: -158855.761840 EM: Round [22] log likelihood: -158855.699230 EM: Round [23] log likelihood: -158855.642412 EM: Round [24] log likelihood: -158855.590497 EM: Round [25] log likelihood: -158855.542777 EM: Round [26] log likelihood: -158855.498680 EM: Round [27] log likelihood: -158855.457744 EM: Round [28] log likelihood: -158855.419585 EM: Round [29] log likelihood: -158855.383887 EM: Round [30] log likelihood: -158855.350382 EM: Round [31] log likelihood: -158855.318847 EM: Round [32] log likelihood: -158855.289088 EM: Round [33] log likelihood: -158855.260941 EM: Round [34] log likelihood: -158855.234263 EM: Round [35] log likelihood: -158855.208932 EM: Round [36] log likelihood: -158855.184837 EM: Round [37] log likelihood: -158855.161885 EM: Round [38] log likelihood: -158855.139989 EM: Round [39] log likelihood: -158855.119076 EM: Round [40] log likelihood: -158855.099078 EM: Round [41] log likelihood: -158855.079934 EM: Round [42] log likelihood: -158855.061591 EM: Round [43] log likelihood: -158855.043999 EM: Round [44] log likelihood: -158855.027114 EM: Round [45] log likelihood: -158855.010894 EM: Round [46] log likelihood: -158854.995302 EM: Round [47] log likelihood: -158854.980305 EM: Round [48] log likelihood: -158854.965871 EM: Round [49] log likelihood: -158854.951971 EM: Round [50] log likelihood: -158854.938579 EM: Round [51] log likelihood: -158854.925668 EM: Round [52] log likelihood: -158854.913217 EM: Round [53] log likelihood: -158854.901203 EM: Round [54] log likelihood: -158854.889607 EM: Round [55] log likelihood: -158854.878409 EM: Round [56] log likelihood: -158854.867593 EM: Round [57] log likelihood: -158854.857141 EM: Round [58] log likelihood: -158854.847039 EM: Round [59] log likelihood: -158854.837271 EM: Round [60] log likelihood: -158854.827824 EM: Round [61] log likelihood: -158854.818685 EM: Round [62] log likelihood: -158854.809841 EM: Round [63] log likelihood: -158854.801281 EM: Round [64] log likelihood: -158854.792993 EM: Round [65] log likelihood: -158854.784968 EM: Round [66] log likelihood: -158854.777196 EM: Round [67] log likelihood: -158854.769666 EM: Round [68] log likelihood: -158854.762370 EM: Round [69] log likelihood: -158854.755300 EM: Round [70] log likelihood: -158854.748446 EM: Round [71] log likelihood: -158854.741802 EM: Round [72] log likelihood: -158854.735360 EM: Round [73] log likelihood: -158854.729113 EM: Round [74] log likelihood: -158854.723054 EM: Round [75] log likelihood: -158854.717177 EM: Round [76] log likelihood: -158854.711474 EM: Round [77] log likelihood: -158854.705942 EM: Round [78] log likelihood: -158854.700572 EM: Round [79] log likelihood: -158854.695361 EM: Round [80] log likelihood: -158854.690303 EM: Round [81] log likelihood: -158854.685393 EM: Round [82] log likelihood: -158854.680626 EM: Round [83] log likelihood: -158854.675997 EM: Round [84] log likelihood: -158854.671502 EM: Round [85] log likelihood: -158854.667136 EM: Round [86] log likelihood: -158854.662896 EM: Round [87] log likelihood: -158854.658777 EM: Round [88] log likelihood: -158854.654776 EM: Round [89] log likelihood: -158854.650888 EM: Round [90] log likelihood: -158854.647111 EM: Round [91] log likelihood: -158854.643441 EM: Round [92] log likelihood: -158854.639874 EM: Round [93] log likelihood: -158854.636408 EM: Round [94] log likelihood: -158854.633039 EM: Round [95] log likelihood: -158854.629764 EM: Round [96] log likelihood: -158854.626580 EM: Round [97] log likelihood: -158854.623485 EM: Round [98] log likelihood: -158854.620476 EM: Round [99] log likelihood: -158854.617551 EM: Round [100] log likelihood: -158854.614706 EM: Round [101] log likelihood: -158854.611939 EM: Round [102] log likelihood: -158854.609249 EM: Round [103] log likelihood: -158854.606632 EM: Round [104] log likelihood: -158854.604087 EM: Round [105] log likelihood: -158854.601612 EM: Round [106] log likelihood: -158854.599204 EM: Round [107] log likelihood: -158854.596861 EM: Round [108] log likelihood: -158854.594582 EM: Round [109] log likelihood: -158854.592365 EM: Round [110] log likelihood: -158854.590207 EM: Round [111] log likelihood: -158854.588108 EM: Round [112] log likelihood: -158854.586065 EM: Round [113] log likelihood: -158854.584077 EM: Round [114] log likelihood: -158854.582143 EM: Round [115] log likelihood: -158854.580260 EM: Round [116] log likelihood: -158854.578427 EM: Round [117] log likelihood: -158854.576643 EM: Round [118] log likelihood: -158854.574907 EM: Round [119] log likelihood: -158854.573217 EM: Round [120] log likelihood: -158854.571571 EM: Round [121] log likelihood: -158854.569969 EM: Round [122] log likelihood: -158854.568410 EM: Round [123] log likelihood: -158854.566891 EM: Round [124] log likelihood: -158854.565412 EM: Round [125] log likelihood: -158854.563972 EM: Round [126] log likelihood: -158854.562570 EM: Round [127] log likelihood: -158854.561204 EM: Round [128] log likelihood: -158854.559875 EM: Round [129] log likelihood: -158854.558579 EM: Round [130] log likelihood: -158854.557318 EM: Round [131] log likelihood: -158854.556089 EM: Round [132] log likelihood: -158854.554892 EM: Round [133] log likelihood: -158854.553726 EM: Round [134] log likelihood: -158854.552590 EM: Round [135] log likelihood: -158854.551483 EM: Round [136] log likelihood: -158854.550405 EM: Round [137] log likelihood: -158854.549355 EM: Round [138] log likelihood: -158854.548331 EM: Round [139] log likelihood: -158854.547334 EM: Round [140] log likelihood: -158854.546362 EM: Round [141] log likelihood: -158854.545415 EM: Round [142] log likelihood: -158854.544492 EM: Round [143] log likelihood: -158854.543593 EM: Round [144] log likelihood: -158854.542716 EM: Round [145] log likelihood: -158854.541862 EM: Round [146] log likelihood: -158854.541029 EM: Round [147] log likelihood: -158854.540217 EM: Round [148] log likelihood: -158854.539425 EM: Round [149] log likelihood: -158854.538654 EM: Round [150] log likelihood: -158854.537902 EM: Round [151] log likelihood: -158854.537169 EM: Round [152] log likelihood: -158854.536454 EM: Round [153] log likelihood: -158854.535757 EM: Round [154] log likelihood: -158854.535077 EM: Round [155] log likelihood: -158854.534414 EM: Round [156] log likelihood: -158854.533768 EM: Round [157] log likelihood: -158854.533137 EM: Round [158] log likelihood: -158854.532523 EM: Round [159] log likelihood: -158854.531923 EM: Round [160] log likelihood: -158854.531339 EM: Round [161] log likelihood: -158854.530768 EM: Round [162] log likelihood: -158854.530212 EM: Round [163] log likelihood: -158854.529669 EM: Round [164] log likelihood: -158854.529140 EM: Round [165] log likelihood: -158854.528623 EM: Round [166] log likelihood: -158854.528120 EM: Round [167] log likelihood: -158854.527628 EM: Round [168] log likelihood: -158854.527148 EM: Round [169] log likelihood: -158854.526680 EM: Round [170] log likelihood: -158854.526224 EM: Round [171] log likelihood: -158854.525778 EM: Round [172] log likelihood: -158854.525343 EM: Round [173] log likelihood: -158854.524919 EM: Round [174] log likelihood: -158854.524505 EM: Round [175] log likelihood: -158854.524100 EM: Round [176] log likelihood: -158854.523706 EM: Round [177] log likelihood: -158854.523321 EM: Round [178] log likelihood: -158854.522945 EM: Round [179] log likelihood: -158854.522578 EM: Round [180] log likelihood: -158854.522219 EM: Round [181] log likelihood: -158854.521869 EM: Round [182] log likelihood: -158854.521528 EM: Round [183] log likelihood: -158854.521195 EM: Round [184] log likelihood: -158854.520869 EM: Round [185] log likelihood: -158854.520551 EM: Round [186] log likelihood: -158854.520241 EM: Round [187] log likelihood: -158854.519937 EM: Round [188] log likelihood: -158854.519641 EM: Round [189] log likelihood: -158854.519352 EM: Round [190] log likelihood: -158854.519070 EM: Round [191] log likelihood: -158854.518794 EM: Round [192] log likelihood: -158854.518525 EM: Round [193] log likelihood: -158854.518261 EM: Round [194] log likelihood: -158854.518004 EM: Round [195] log likelihood: -158854.517753 EM: Round [196] log likelihood: -158854.517508 EM: Round [197] log likelihood: -158854.517268 EM: Round [198] log likelihood: -158854.517034 EM: Round [199] log likelihood: -158854.516805 EM: Round [200] log likelihood: -158854.516581 EM: Round [201] log likelihood: -158854.516363 EM: Round [202] log likelihood: -158854.516149 EM: Round [203] log likelihood: -158854.515940 EM: Round [204] log likelihood: -158854.515736 EM: Round [205] log likelihood: -158854.515537 EM: Round [206] log likelihood: -158854.515342 EM: Round [207] log likelihood: -158854.515152 EM: Round [208] log likelihood: -158854.514965 EM: Round [209] log likelihood: -158854.514783 EM: Round [210] log likelihood: -158854.514605 EM: Round [211] log likelihood: -158854.514431 EM: Round [212] log likelihood: -158854.514261 EM: Round [213] log likelihood: -158854.514095 EM: Round [214] log likelihood: -158854.513932 EM: Round [215] log likelihood: -158854.513773 EM: Round [216] log likelihood: -158854.513618 EM: Round [217] log likelihood: -158854.513466 EM: Round [218] log likelihood: -158854.513317 EM: Round [219] log likelihood: -158854.513171 EM: Round [220] log likelihood: -158854.513029 EM: Round [221] log likelihood: -158854.512890 EM: Round [222] log likelihood: -158854.512754 EM: Round [223] log likelihood: -158854.512621 EM: Round [224] log likelihood: -158854.512490 EM: Round [225] log likelihood: -158854.512363 EM: Round [226] log likelihood: -158854.512238 EM: Round [227] log likelihood: -158854.512116 EM: Round [228] log likelihood: -158854.511997 EM: Round [229] log likelihood: -158854.511880 EM: Round [230] log likelihood: -158854.511766 EM: Round [231] log likelihood: -158854.511654 EM: Round [232] log likelihood: -158854.511544 EM: Round [233] log likelihood: -158854.511437 EM: Round [234] log likelihood: -158854.511332 EM: Round [235] log likelihood: -158854.511230 EM: Round [236] log likelihood: -158854.511129 EM: Round [237] log likelihood: -158854.511031 EM: Stopping iterations at round 237 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 188970318 > /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir > /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir --annotate /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir -done, see /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 1358, filtered: 9023) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.zvwEETnrkn/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.zvwEETnrkn/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000234715.2] WARNING, no entry stored in dbm for [ENSG00000280136.2] WARNING, no entry stored in dbm for [ENSG00000225292.2] WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000243753.5] WARNING, no entry stored in dbm for [ENSG00000181126.13] WARNING, no entry stored in dbm for [ENSG00000260318.1] WARNING, no entry stored in dbm for [ENSG00000205534.6] WARNING, no entry stored in dbm for [ENSG00000282458.1] WARNING, no entry stored in dbm for [ENSG00000234769.7] WARNING, no entry stored in dbm for [ENSG00000287129.1] WARNING, no entry stored in dbm for [ENSG00000231646.6] WARNING, no entry stored in dbm for [ENSG00000274712.2] WARNING, no entry stored in dbm for [ENSG00000225594.1] WARNING, no entry stored in dbm for [ENSG00000221953.5] WARNING, no entry stored in dbm for [ENSG00000242435.1] WARNING, no entry stored in dbm for [ENSG00000078319.10] WARNING, no entry stored in dbm for [ENSG00000248677.2] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000206975.1] WARNING, no entry stored in dbm for [ENSG00000242559.3] WARNING, no entry stored in dbm for [ENSG00000240869.3] WARNING, no entry stored in dbm for [ENSG00000255875.2] WARNING, no entry stored in dbm for [ENSG00000106133.18] WARNING, no entry stored in dbm for [ENSG00000229739.4] WARNING, no entry stored in dbm for [ENSG00000282508.2] WARNING, no entry stored in dbm for [ENSG00000280114.1] WARNING, no entry stored in dbm for [ENSG00000214970.8] WARNING, no entry stored in dbm for [ENSG00000225851.1] WARNING, no entry stored in dbm for [ENSG00000225465.10] WARNING, no entry stored in dbm for [ENSG00000225851.1] WARNING, no entry stored in dbm for [ENSG00000279066.1] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000255052.5] WARNING, no entry stored in dbm for [ENSG00000254016.3] WARNING, no entry stored in dbm for [ENSG00000236438.7] WARNING, no entry stored in dbm for [ENSG00000254275.6] WARNING, no entry stored in dbm for [ENSG00000228685.1] WARNING, no entry stored in dbm for [ENSG00000234851.4] WARNING, no entry stored in dbm for [ENSG00000230490.3] WARNING, no entry stored in dbm for [ENSG00000248126.1] WARNING, no entry stored in dbm for [ENSG00000250869.2] WARNING, no entry stored in dbm for [ENSG00000284613.1] WARNING, no entry stored in dbm for [ENSG00000233527.9] WARNING, no entry stored in dbm for [ENSG00000260917.1] WARNING, no entry stored in dbm for [ENSG00000257267.3] WARNING, no entry stored in dbm for [ENSG00000225178.5] WARNING, no entry stored in dbm for [ENSG00000204789.4] WARNING, no entry stored in dbm for [ENSG00000205853.12] WARNING, no entry stored in dbm for [ENSG00000232104.3] WARNING, no entry stored in dbm for [ENSG00000233013.10] WARNING, no entry stored in dbm for [ENSG00000236829.9] WARNING, no entry stored in dbm for [ENSG00000231559.1] WARNING, no entry stored in dbm for [ENSG00000279217.1] WARNING, no entry stored in dbm for [ENSG00000252585.1] WARNING, no entry stored in dbm for [ENSG00000233885.7] WARNING, no entry stored in dbm for [ENSG00000229587.2] WARNING, no entry stored in dbm for [ENSG00000251141.6] WARNING, no entry stored in dbm for [ENSG00000272848.2] WARNING, no entry stored in dbm for [ENSG00000285961.1] WARNING, no entry stored in dbm for [ENSG00000185596.16] WARNING, no entry stored in dbm for [ENSG00000173209.23] WARNING, no entry stored in dbm for [ENSG00000146556.14] WARNING, no entry stored in dbm for [ENSG00000188599.17] WARNING, no entry stored in dbm for [ENSG00000254620.1] WARNING, no entry stored in dbm for [ENSG00000260372.7] WARNING, no entry stored in dbm for [ENSG00000232546.1] WARNING, no entry stored in dbm for [ENSG00000223703.1] WARNING, no entry stored in dbm for [ENSG00000235954.7] WARNING, no entry stored in dbm for [ENSG00000146556.14] WARNING, no entry stored in dbm for [ENSG00000278591.1] WARNING, no entry stored in dbm for [ENSG00000275219.1] WARNING, no entry stored in dbm for [ENSG00000274452.1] WARNING, no entry 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no entry stored in dbm for [ENSG00000249287.1] WARNING, no entry stored in dbm for [ENSG00000286654.1] WARNING, no entry stored in dbm for [ENSG00000224966.4] WARNING, no entry stored in dbm for [ENSG00000226823.1] WARNING, no entry stored in dbm for [ENSG00000242294.6] WARNING, no entry stored in dbm for [ENSG00000239521.9] WARNING, no entry stored in dbm for [ENSG00000205583.13] WARNING, no entry stored in dbm for [ENSG00000272168.8] WARNING, no entry stored in dbm for [ENSG00000280828.1] WARNING, no entry stored in dbm for [ENSG00000268364.2] WARNING, no entry stored in dbm for [ENSG00000215790.8] WARNING, no entry stored in dbm for [ENSG00000215790.8] WARNING, no entry stored in dbm for [ENSG00000233559.2] WARNING, no entry stored in dbm for [ENSG00000228463.10] WARNING, no entry stored in dbm for [ENSG00000185986.12] WARNING, no entry stored in dbm for [ENSG00000188002.10] WARNING, no entry stored in dbm for [ENSG00000254275.6] WARNING, no entry stored in dbm for [ENSG00000268120.1] WARNING, no entry stored in dbm for [ENSG00000287882.1] WARNING, no entry stored in dbm for [ENSG00000231133.8] WARNING, no entry stored in dbm for [ENSG00000236501.6] WARNING, no entry stored in dbm for [ENSG00000266858.1] WARNING, no entry stored in dbm for [ENSG00000231368.1] WARNING, no entry stored in dbm for [ENSG00000233836.7] WARNING, no entry stored in dbm for [ENSG00000233416.1] WARNING, no entry stored in dbm for [ENSG00000213238.6] WARNING, no entry stored in dbm for [ENSG00000215184.2] WARNING, no entry stored in dbm for [ENSG00000231349.2] WARNING, no entry stored in dbm for [ENSG00000184139.8] WARNING, no entry stored in dbm for [ENSG00000242882.1] WARNING, no entry stored in dbm for [ENSG00000240412.1] WARNING, no entry stored in dbm for [ENSG00000286509.1] WARNING, no entry stored in dbm for [ENSG00000205853.12] WARNING, no entry stored in dbm for [ENSG00000236801.1] WARNING, no entry stored in dbm for [ENSG00000244237.1] WARNING, no entry stored in dbm for [ENSG00000279693.1] WARNING, no entry stored in dbm for [ENSG00000232463.1] WARNING, no entry stored in dbm for [ENSG00000218716.1] WARNING, no entry stored in dbm for [ENSG00000226835.3] WARNING, no entry stored in dbm for [ENSG00000251889.1] WARNING, no entry stored in dbm for [ENSG00000201806.1] WARNING, no entry stored in dbm for [ENSG00000274585.1] WARNING, no entry stored in dbm for [ENSG00000199839.1] WARNING, no entry stored in dbm for [ENSG00000239899.3] WARNING, no entry stored in dbm for [ENSG00000264275.1] WARNING, no entry stored in dbm for [ENSG00000239899.3] WARNING, no entry stored in dbm for [ENSG00000239607.3] WARNING, no entry stored in dbm for [ENSG00000239899.3] WARNING, no entry stored in dbm for [ENSG00000240183.3] WARNING, no entry stored in dbm for [ENSG00000239899.3] WARNING, no entry stored in dbm for [ENSG00000253602.2] WARNING, no entry stored in dbm for [ENSG00000244710.3] WARNING, no entry stored in dbm for [ENSG00000240869.3] WARNING, no entry stored in dbm for [ENSG00000275014.1] WARNING, no entry stored in dbm for [ENSG00000240869.3] WARNING, no entry stored in dbm for [ENSG00000188599.17] WARNING, no entry stored in dbm for [ENSG00000278834.1] WARNING, no entry stored in dbm for [ENSG00000268592.3] WARNING, no entry stored in dbm for [ENSG00000228526.7] WARNING, no entry stored in dbm for [ENSG00000249859.12] WARNING, no entry stored in dbm for [ENSG00000241720.2] WARNING, no entry stored in dbm for [ENSG00000225649.6] WARNING, no entry stored in dbm for [ENSG00000204434.6] WARNING, no entry stored in dbm for [ENSG00000226549.3] WARNING, no entry stored in dbm for [ENSG00000235200.3] WARNING, no entry stored in dbm for [ENSG00000259976.3] WARNING, no entry stored in dbm for [ENSG00000240869.3] WARNING, no entry stored in dbm for [ENSG00000250251.6] WARNING, no entry stored in dbm for [ENSG00000243446.3] WARNING, no entry stored in dbm for [ENSG00000248283.2] WARNING, no entry stored in dbm for [ENSG00000226688.7] WARNING, no entry stored in dbm for [ENSG00000229847.9] WARNING, no entry stored in dbm for [ENSG00000245750.10] WARNING, no entry stored in dbm for [ENSG00000280828.1] WARNING, no entry stored in dbm for [ENSG00000214772.2] WARNING, no entry stored in dbm for [ENSG00000225855.7] WARNING, no entry stored in dbm for [ENSG00000214807.2] WARNING, no entry stored in dbm for [ENSG00000226703.1] WARNING, no entry stored in dbm for [ENSG00000196796.5] WARNING, no entry stored in dbm for [ENSG00000253559.1] WARNING, no entry stored in dbm for [ENSG00000279460.1] WARNING, no entry stored in dbm for [ENSG00000226471.6] WARNING, no entry stored in dbm for [ENSG00000213701.4] WARNING, no entry stored in dbm for [ENSG00000213701.4] WARNING, no entry stored in dbm for [ENSG00000261457.3] WARNING, no entry stored in dbm for [ENSG00000211459.2] WARNING, no entry stored in dbm for [ENSG00000228323.2] WARNING, no entry stored in dbm for [ENSG00000205360.6] WARNING, no entry stored in dbm for [ENSG00000162840.4] WARNING, no entry stored in dbm for [ENSG00000260322.1] WARNING, no entry stored in dbm for [ENSG00000285106.2] WARNING, no entry stored in dbm for [ENSG00000267519.6] WARNING, no entry stored in dbm for [ENSG00000283240.1] WARNING, no entry stored in dbm for [ENSG00000229619.4] WARNING, no entry stored in dbm for [ENSG00000249669.10] WARNING, no entry stored in dbm for [ENSG00000234323.8] WARNING, no entry stored in dbm for [ENSG00000267278.6] WARNING, no entry stored in dbm for [ENSG00000248973.3] WARNING, no entry stored in dbm for [ENSG00000280047.1] WARNING, no entry stored in dbm for [ENSG00000284747.1] WARNING, no entry stored in dbm for [ENSG00000248323.7] WARNING, no entry stored in dbm for [ENSG00000271118.1] WARNING, no entry stored in dbm for [ENSG00000271013.1] WARNING, no entry stored in dbm for [ENSG00000185594.7] WARNING, no entry stored in dbm for [ENSG00000225045.1] WARNING, no entry stored in dbm for [ENSG00000232527.8] WARNING, no entry stored in dbm for [ENSG00000272779.1] WARNING, no entry stored in dbm for [ENSG00000226005.5] WARNING, no entry stored in dbm for [ENSG00000256422.6] WARNING, no entry stored in dbm for [ENSG00000249203.2] WARNING, no entry stored in dbm for [ENSG00000249203.2] WARNING, no entry stored in dbm for [ENSG00000279579.3] WARNING, no entry stored in dbm for [ENSG00000260477.8] WARNING, no entry stored in dbm for [ENSG00000224577.3] WARNING, no entry stored in dbm for [ENSG00000235703.6] WARNING, no entry stored in dbm for [ENSG00000245060.8] WARNING, no entry stored in dbm for [ENSG00000235770.6] WARNING, no entry stored in dbm for [ENSG00000228221.6] WARNING, no entry stored in dbm for [ENSG00000196273.8] WARNING, no entry stored in dbm for [ENSG00000253354.2] WARNING, no entry stored in dbm for [ENSG00000233930.4] WARNING, no entry stored in dbm for [ENSG00000286948.1] WARNING, no entry stored in dbm for [ENSG00000231203.1] WARNING, no entry stored in dbm for [ENSG00000214514.8] WARNING, no entry stored in dbm for [ENSG00000218014.1] WARNING, no entry stored in dbm for [ENSG00000230202.1] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000231304.2] WARNING, no entry stored in dbm for [ENSG00000284951.1] WARNING, no entry stored in dbm for [ENSG00000254034.2] WARNING, no entry stored in dbm for [ENSG00000228799.6] WARNING, no entry stored in dbm for [ENSG00000261467.2] WARNING, no entry stored in dbm for [ENSG00000259315.1] WARNING, no entry stored in dbm for [ENSG00000272888.7] WARNING, no entry stored in dbm for [ENSG00000285219.2] WARNING, no entry stored in dbm for [ENSG00000220575.8] WARNING, no entry stored in dbm for [ENSG00000231312.7] WARNING, no entry stored in dbm for [ENSG00000251557.2] WARNING, no entry stored in dbm for [ENSG00000270494.1] WARNING, no entry stored in dbm for [ENSG00000254519.5] WARNING, no entry stored in dbm for [ENSG00000287516.1] WARNING, no entry stored in dbm for [ENSG00000253540.5] WARNING, no entry stored in dbm for [ENSG00000200769.1] WARNING, no entry stored in dbm for [ENSG00000235831.7] WARNING, no entry stored in dbm for [ENSG00000258384.1] WARNING, no entry stored in dbm for [ENSG00000226803.9] WARNING, no entry stored in dbm for [ENSG00000277232.2] WARNING, no entry stored in dbm for [ENSG00000234945.8] WARNING, no entry stored in dbm for [ENSG00000247498.10] WARNING, no entry stored in dbm for [ENSG00000166104.15] WARNING, no entry stored in dbm for [ENSG00000166104.15] WARNING, no entry stored in dbm for [ENSG00000251209.9] WARNING, no entry stored in dbm for [ENSG00000218713.1] WARNING, no entry stored in dbm for [ENSG00000196295.12] WARNING, no entry stored in dbm for [ENSG00000196204.12] WARNING, no entry stored in dbm for [ENSG00000285756.2] WARNING, no entry stored in dbm for [ENSG00000285756.2] WARNING, no entry stored in dbm for [ENSG00000285756.2] WARNING, no entry stored in dbm for [ENSG00000215483.11] WARNING, no entry stored in dbm for [ENSG00000229180.7] WARNING, no entry stored in dbm for [ENSG00000258926.2] WARNING, no entry stored in dbm for [ENSG00000280136.2] WARNING, no entry stored in dbm for [ENSG00000229983.1] WARNING, no entry stored in dbm for [ENSG00000288187.1] WARNING, no entry stored in dbm for [ENSG00000225393.1] WARNING, no entry stored in dbm for [ENSG00000233622.3] WARNING, no entry stored in dbm for [ENSG00000213468.7] WARNING, no entry stored in dbm for [ENSG00000279459.1] WARNING, no entry stored in dbm for [ENSG00000241015.2] WARNING, no entry stored in dbm for [ENSG00000273143.2] WARNING, no entry stored in dbm for [ENSG00000273654.1] WARNING, no entry stored in dbm for [ENSG00000272030.1] WARNING, no entry stored in dbm for [ENSG00000233013.10] WARNING, no entry stored in dbm for [ENSG00000197085.11] WARNING, no entry stored in dbm for [ENSG00000286042.1] WARNING, no entry stored in dbm for [ENSG00000250708.2] WARNING, no entry stored in dbm for [ENSG00000215374.6] WARNING, no entry stored in dbm for [ENSG00000211459.2] WARNING, no entry stored in dbm for [ENSG00000225328.2] WARNING, no entry stored in dbm for [ENSG00000223825.5] WARNING, no entry stored in dbm for [ENSG00000235244.4] WARNING, no entry stored in dbm for [ENSG00000260860.2] WARNING, no entry stored in dbm for [ENSG00000276077.4] WARNING, no entry stored in dbm for [ENSG00000233614.6] WARNING, no entry stored in dbm for [ENSG00000259673.6] WARNING, no entry stored in dbm for [ENSG00000185485.14] WARNING, no entry stored in dbm for [ENSG00000186162.10] WARNING, no entry stored in dbm for [ENSG00000231461.1] WARNING, no entry stored in dbm for [ENSG00000224631.4] WARNING, no entry stored in dbm for [ENSG00000249669.10] WARNING, no entry stored in dbm for [ENSG00000249669.10] WARNING, no entry stored in dbm for [ENSG00000254860.6] WARNING, no entry stored in dbm for [ENSG00000173209.23] WARNING, no entry stored in dbm for [ENSG00000226448.1] WARNING, no entry stored in dbm for [ENSG00000226549.3] WARNING, no entry stored in dbm for [ENSG00000188511.12] WARNING, no entry stored in dbm for [ENSG00000254838.5] WARNING, no entry stored in dbm for [ENSG00000285756.2] WARNING, no entry stored in dbm for [ENSG00000099725.14] WARNING, no entry stored in dbm for [ENSG00000285756.2] WARNING, no entry stored in dbm for [ENSG00000099725.14] WARNING, no entry stored in dbm for [ENSG00000285756.2] WARNING, no entry stored in dbm for [ENSG00000099725.14] WARNING, no entry stored in dbm for [ENSG00000237265.6] WARNING, no entry stored in dbm for [ENSG00000267432.6] WARNING, no entry stored in dbm for [ENSG00000205534.6] WARNING, no entry stored in dbm for [ENSG00000232460.4] WARNING, no entry stored in dbm for [ENSG00000262400.1] WARNING, no entry stored in dbm for [ENSG00000255545.8] WARNING, no entry stored in dbm for [ENSG00000278022.1] WARNING, no entry stored in dbm for [ENSG00000253502.1] WARNING, no entry stored in dbm for [ENSG00000271614.1] WARNING, no entry stored in dbm for [ENSG00000249669.10] WARNING, no entry stored in dbm for [ENSG00000272922.1] WARNING, no entry stored in dbm for [ENSG00000202423.1] WARNING, no entry stored in dbm for [ENSG00000253717.1] WARNING, no entry stored in dbm for [ENSG00000254987.1] WARNING, no entry stored in dbm for [ENSG00000255093.2] WARNING, no entry stored in dbm for [ENSG00000247137.9] WARNING, no entry stored in dbm for [ENSG00000228065.11] WARNING, no entry stored in dbm for [ENSG00000280128.1] WARNING, no entry stored in dbm for [ENSG00000234117.2] WARNING, no entry stored in dbm for [ENSG00000287887.1] WARNING, no entry stored in dbm for [ENSG00000279459.1] WARNING, no entry stored in dbm for [ENSG00000235749.3] WARNING, no entry stored in dbm for [ENSG00000287564.1] WARNING, no entry stored in dbm for [ENSG00000246203.2] WARNING, no entry stored in dbm for [ENSG00000224307.2] WARNING, no entry stored in dbm for [ENSG00000258656.1] WARNING, no entry stored in dbm for [ENSG00000214195.4] WARNING, no entry stored in dbm for [ENSG00000228436.3] WARNING, no entry stored in dbm for [ENSG00000230615.7] WARNING, no entry stored in dbm for [ENSG00000283773.1] WARNING, no entry stored in dbm for [ENSG00000283773.1] WARNING, no entry stored in dbm for [ENSG00000258727.1] WARNING, no entry stored in dbm for [ENSG00000272848.2] WARNING, no entry stored in dbm for [ENSG00000285887.1] WARNING, no entry stored in dbm for [ENSG00000227486.2] WARNING, no entry stored in dbm for [ENSG00000288543.1] WARNING, no entry stored in dbm for [ENSG00000279930.1] WARNING, no entry stored in dbm for [ENSG00000230107.1] WARNING, no entry stored in dbm for [ENSG00000226310.1] WARNING, no entry stored in dbm for [ENSG00000248692.5] WARNING, no entry stored in dbm for [ENSG00000240197.1] WARNING, no entry stored in dbm for [ENSG00000275431.1] WARNING, no entry stored in dbm for [ENSG00000284964.1] WARNING, no entry stored in dbm for [ENSG00000277125.1] WARNING, no entry stored in dbm for [ENSG00000277125.1] WARNING, no entry stored in dbm for [ENSG00000271623.1] WARNING, no entry stored in dbm for [ENSG00000215158.9] WARNING, no entry stored in dbm for [ENSG00000285057.1] WARNING, no entry stored in dbm for [ENSG00000278212.2] WARNING, no entry stored in dbm for [ENSG00000215302.8] WARNING, no entry stored in dbm for [ENSG00000248323.7] WARNING, no entry stored in dbm for [ENSG00000258334.1] WARNING, no entry stored in dbm for [ENSG00000235421.1] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000280828.1] WARNING, no entry stored in dbm for [ENSG00000250421.5] WARNING, no entry stored in dbm for [ENSG00000224479.6] WARNING, no entry stored in dbm for [ENSG00000246541.2] WARNING, no entry stored in dbm for [ENSG00000249392.1] WARNING, no entry stored in dbm for [ENSG00000287290.1] WARNING, no entry stored in dbm for [ENSG00000249335.2] WARNING, no entry stored in dbm for [ENSG00000259976.3] WARNING, no entry stored in dbm for [ENSG00000286714.1] WARNING, no entry stored in dbm for [ENSG00000287132.1] WARNING, no entry stored in dbm for [ENSG00000282057.1] WARNING, no entry stored in dbm for [ENSG00000268362.6] WARNING, no entry stored in dbm for [ENSG00000248126.1] WARNING, no entry stored in dbm for [ENSG00000266283.1] WARNING, no entry stored in dbm for [ENSG00000254102.2] WARNING, no entry stored in dbm for [ENSG00000261392.1] WARNING, no entry stored in dbm for [ENSG00000204745.4] WARNING, no entry stored in dbm for [ENSG00000233673.7] WARNING, no entry stored in dbm for [ENSG00000272693.4] WARNING, no entry stored in dbm for [ENSG00000235027.1] WARNING, no entry stored in dbm for [ENSG00000254951.7] WARNING, no entry stored in dbm for [ENSG00000278621.1] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000267040.6] WARNING, no entry stored in dbm for [ENSG00000256694.1] WARNING, no entry stored in dbm for [ENSG00000263063.1] WARNING, no entry stored in dbm for [ENSG00000248538.8] WARNING, no entry stored in dbm for [ENSG00000268093.1] WARNING, no entry stored in dbm for [ENSG00000235978.6] WARNING, no entry stored in dbm for [ENSG00000267422.1] WARNING, no entry stored in dbm for [ENSG00000232386.9] WARNING, no entry stored in dbm for [ENSG00000232386.9] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000186148.13] WARNING, no entry stored in dbm for [ENSG00000268543.1] WARNING, no entry stored in dbm for [ENSG00000242411.2] WARNING, no entry stored in dbm for [ENSG00000225840.2] WARNING, no entry stored in dbm for [ENSG00000277977.1] WARNING, no entry stored in dbm for [ENSG00000253880.1] WARNING, no entry stored in dbm for [ENSG00000286797.1] WARNING, no entry stored in dbm for [ENSG00000286797.1] WARNING, no entry stored in dbm for [ENSG00000286797.1] WARNING, no entry stored in dbm for [ENSG00000230383.1] WARNING, no entry stored in dbm for [ENSG00000277458.1] WARNING, no entry stored in dbm for [ENSG00000158482.10] WARNING, no entry stored in dbm for [ENSG00000261560.1] WARNING, no entry stored in dbm for [ENSG00000269745.1] WARNING, no entry stored in dbm for [ENSG00000261786.1] WARNING, no entry stored in dbm for [ENSG00000226482.1] WARNING, no entry stored in dbm for [ENSG00000267218.2] WARNING, no entry stored in dbm for [ENSG00000256943.1] WARNING, no entry stored in dbm for [ENSG00000230305.2] WARNING, no entry stored in dbm for [ENSG00000250778.1] WARNING, no entry stored in dbm for [ENSG00000243554.1] WARNING, no entry stored in dbm for [ENSG00000225969.2] WARNING, no entry stored in dbm for [ENSG00000251595.7] * STAR-Fusion complete. See output: /tmp/nxf.zvwEETnrkn/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)