Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/9a38257650726e881f0ec9a9296bd5/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/0e0dc208c9cd969ba15dbdd4b05d52/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/0e0dc208c9cd969ba15dbdd4b05d52/.command.sh
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 293334969
unpaired = 4696557
MERGED PAIRED END READS = 293334969
MATES PROCESSED = 591366495
TOTAL READS     = 298031526
DISTINCT READS  = 1.01922e+08
DISTINCT COUNTS = 1894
MAX COUNT       = 933481
COUNTS OF 1     = 4.06652e+07
MAX TERMS       = 100
OBSERVED COUNTS (933482)
1	40665244
2	23849149
3	14272355
4	8452093
5	5026949
6	3045952
7	1897934
8	1224201
9	815141
10	563303
11	401129
12	293145
13	219822
14	168119
15	131756
16	104204
17	84741
18	69673
19	58259
20	49423
21	42076
22	36174
23	31605
24	27782
25	24652
26	21928
27	19567
28	17496
29	16019
30	14532
31	13228
32	12163
33	11102
34	10319
35	9516
36	8796
37	8131
38	7676
39	7079
40	6637
41	6154
42	5832
43	5430
44	5386
45	4910
46	4574
47	4462
48	4253
49	3985
50	3726
51	3596
52	3512
53	3265
54	3087
55	2986
56	2772
57	2786
58	2669
59	2535
60	2417
61	2257
62	2198
63	2105
64	2131
65	1982
66	1977
67	1918
68	1728
69	1739
70	1626
71	1653
72	1592
73	1500
74	1540
75	1403
76	1365
77	1400
78	1298
79	1218
80	1236
81	1137
82	1146
83	1162
84	1064
85	1000
86	1074
87	1032
88	944
89	952
90	932
91	915
92	866
93	812
94	785
95	804
96	792
97	768
98	740
99	782
100	738
101	690
102	638
103	672
104	718
105	629
106	650
107	624
108	584
109	575
110	574
111	582
112	588
113	532
114	518
115	521
116	491
117	509
118	514
119	465
120	496
121	497
122	484
123	433
124	449
125	447
126	435
127	434
128	402
129	394
130	427
131	449
132	366
133	387
134	383
135	387
136	357
137	362
138	329
139	347
140	320
141	356
142	315
143	339
144	335
145	304
146	288
147	280
148	302
149	287
150	292
151	271
152	294
153	281
154	249
155	256
156	266
157	241
158	256
159	263
160	249
161	252
162	220
163	242
164	285
165	195
166	232
167	218
168	212
169	210
170	218
171	219
172	238
173	211
174	225
175	200
176	169
177	197
178	189
179	209
180	185
181	171
182	192
183	178
184	182
185	188
186	168
187	182
188	182
189	160
190	165
191	155
192	153
193	174
194	153
195	161
196	153
197	153
198	136
199	144
200	131
201	155
202	152
203	131
204	158
205	132
206	140
207	129
208	135
209	140
210	126
211	110
212	109
213	128
214	113
215	107
216	136
217	109
218	128
219	114
220	116
221	102
222	112
223	130
224	114
225	98
226	105
227	111
228	121
229	114
230	92
231	111
232	98
233	104
234	111
235	103
236	111
237	82
238	85
239	106
240	75
241	107
242	82
243	84
244	90
245	86
246	84
247	80
248	103
249	81
250	85
251	92
252	79
253	81
254	83
255	96
256	85
257	78
258	82
259	80
260	91
261	70
262	73
263	80
264	72
265	75
266	82
267	83
268	69
269	55
270	65
271	66
272	69
273	57
274	58
275	64
276	79
277	74
278	60
279	66
280	74
281	63
282	47
283	81
284	50
285	57
286	55
287	68
288	73
289	71
290	63
291	59
292	50
293	62
294	68
295	59
296	57
297	49
298	47
299	48
300	55
301	60
302	51
303	45
304	65
305	53
306	50
307	49
308	65
309	52
310	52
311	45
312	38
313	52
314	50
315	52
316	58
317	51
318	51
319	37
320	49
321	48
322	64
323	53
324	45
325	44
326	53
327	50
328	34
329	33
330	44
331	48
332	32
333	38
334	38
335	44
336	45
337	45
338	39
339	52
340	51
341	49
342	41
343	34
344	41
345	45
346	42
347	32
348	45
349	39
350	46
351	48
352	46
353	43
354	30
355	39
356	30
357	46
358	32
359	31
360	39
361	33
362	40
363	35
364	37
365	41
366	39
367	29
368	31
369	35
370	31
371	26
372	28
373	29
374	33
375	28
376	41
377	44
378	33
379	28
380	29
381	35
382	31
383	17
384	25
385	35
386	29
387	28
388	34
389	22
390	35
391	35
392	29
393	41
394	37
395	35
396	33
397	32
398	29
399	33
400	26
401	22
402	26
403	22
404	21
405	18
406	32
407	23
408	24
409	24
410	27
411	33
412	30
413	31
414	20
415	20
416	31
417	20
418	24
419	18
420	19
421	17
422	30
423	22
424	12
425	25
426	19
427	26
428	23
429	34
430	23
431	20
432	26
433	20
434	30
435	26
436	26
437	25
438	19
439	19
440	23
441	22
442	20
443	23
444	22
445	24
446	25
447	24
448	16
449	25
450	18
451	21
452	20
453	13
454	22
455	23
456	27
457	24
458	14
459	21
460	22
461	18
462	24
463	14
464	17
465	25
466	13
467	16
468	13
469	19
470	19
471	27
472	11
473	15
474	13
475	24
476	11
477	23
478	24
479	15
480	21
481	14
482	14
483	19
484	18
485	24
486	19
487	25
488	17
489	17
490	16
491	11
492	15
493	20
494	15
495	16
496	20
497	16
498	12
499	21
500	16
501	17
502	11
503	21
504	17
505	18
506	17
507	10
508	11
509	13
510	24
511	10
512	18
513	17
514	13
515	19
516	11
517	13
518	17
519	19
520	11
521	20
522	11
523	18
524	6
525	18
526	12
527	15
528	14
529	15
530	5
531	12
532	13
533	8
534	14
535	11
536	12
537	9
538	12
539	14
540	15
541	12
542	15
543	9
544	11
545	9
546	11
547	13
548	11
549	13
550	8
551	10
552	11
553	9
554	12
555	12
556	11
557	15
558	7
559	18
560	13
561	15
562	11
563	15
564	10
565	7
566	6
567	14
568	12
569	12
570	12
571	13
572	13
573	9
574	14
575	12
576	12
577	10
578	11
579	9
580	12
581	11
582	11
583	15
584	11
585	11
586	5
587	9
588	10
589	15
590	10
591	13
592	14
593	9
594	16
595	12
596	11
597	11
598	13
599	12
600	7
601	10
602	12
603	12
604	9
605	11
606	11
607	15
608	16
609	8
610	5
611	9
612	8
613	10
614	9
615	13
616	7
617	10
618	10
619	7
620	8
621	7
622	12
623	11
624	12
625	11
626	12
627	9
628	6
629	8
630	7
631	3
632	6
633	7
634	5
635	8
636	13
637	11
638	10
639	7
640	9
641	9
642	9
643	10
644	6
645	6
646	5
647	7
648	6
649	5
650	6
651	7
652	6
653	12
654	4
655	13
656	6
657	8
658	7
659	9
660	10
661	10
662	8
663	8
664	5
665	7
666	9
667	4
668	9
669	9
670	11
671	9
672	5
673	11
674	4
675	8
676	7
677	9
678	4
679	4
680	10
681	4
682	9
683	4
684	1
685	10
686	8
687	10
688	8
689	10
690	6
691	6
692	13
693	6
694	10
695	8
696	4
697	5
698	14
699	9
700	10
701	4
702	6
703	8
704	5
705	6
706	9
707	5
708	8
709	7
710	6
711	5
712	4
713	6
714	10
715	6
716	10
717	11
718	8
719	2
720	2
721	6
722	5
723	7
724	7
725	7
726	2
727	6
728	9
729	5
730	7
731	7
732	7
733	6
734	6
735	5
736	4
737	8
738	9
739	4
740	4
741	5
742	3
743	5
744	5
745	9
746	10
747	1
748	2
749	6
750	6
751	7
752	5
753	5
754	7
755	6
756	3
757	10
758	7
759	2
760	3
761	6
762	3
763	8
764	7
765	7
766	3
767	3
768	2
769	6
770	6
771	4
772	5
773	8
774	5
775	5
776	6
777	3
778	1
779	4
780	10
781	5
782	2
783	9
784	3
785	6
786	6
787	8
788	2
789	5
790	4
791	5
792	8
793	1
794	3
795	5
796	8
797	6
798	1
799	6
800	3
801	2
802	5
803	6
804	3
805	7
806	4
807	4
808	1
809	7
810	5
811	7
812	5
813	1
814	5
815	2
816	6
817	6
818	5
819	2
820	6
821	1
822	2
823	6
824	5
825	2
826	5
827	4
828	1
829	4
830	4
831	6
832	3
833	6
834	8
835	4
836	3
837	4
838	1
839	4
840	5
841	4
842	3
843	5
844	7
845	3
846	3
847	3
848	5
849	2
850	6
851	5
852	7
853	4
854	7
855	4
856	7
857	1
858	2
859	2
860	2
861	1
862	2
863	1
864	3
865	7
866	4
867	4
868	4
869	3
870	5
871	7
872	4
873	7
874	6
875	5
876	3
877	2
878	6
879	2
880	3
881	3
882	6
883	6
884	1
886	1
887	6
889	2
890	4
891	1
892	5
893	6
894	2
895	2
896	5
897	7
898	4
899	3
900	3
901	2
902	4
903	4
904	5
905	2
906	4
907	3
908	4
909	5
910	1
911	4
912	2
913	5
914	2
915	4
916	3
917	5
918	3
919	5
920	2
921	5
922	9
923	5
924	2
925	3
926	4
927	2
928	2
929	2
930	3
931	5
932	5
933	5
934	2
935	3
936	2
938	2
939	3
940	2
941	3
942	4
943	1
944	3
945	4
946	4
947	3
948	5
949	1
950	3
951	4
952	4
953	4
954	6
955	2
956	2
957	3
958	5
959	4
960	1
961	4
962	1
963	3
964	10
965	1
966	6
967	3
968	4
969	3
970	5
971	2
972	1
973	5
974	2
976	3
977	6
978	3
979	3
980	3
981	1
983	4
984	2
985	3
986	2
987	3
988	4
989	2
990	3
991	2
992	5
993	4
994	1
995	3
996	5
997	2
998	1
999	5
1000	7
1001	2
1002	4
1003	1
1004	3
1005	3
1006	5
1007	4
1008	2
1009	3
1011	2
1012	1
1013	3
1014	3
1015	6
1016	1
1017	1
1018	2
1019	3
1020	2
1021	3
1022	3
1023	3
1024	2
1026	1
1027	1
1028	1
1029	6
1030	2
1031	1
1033	3
1034	3
1035	3
1036	1
1037	4
1038	1
1039	4
1040	1
1041	2
1042	2
1043	1
1044	3
1046	3
1047	2
1048	2
1049	1
1050	1
1051	2
1052	1
1053	4
1055	3
1056	2
1057	2
1058	2
1059	3
1060	3
1061	2
1062	2
1063	2
1064	1
1065	1
1066	1
1067	3
1068	3
1069	4
1070	2
1071	6
1072	3
1073	2
1074	2
1076	1
1077	1
1078	4
1079	2
1080	4
1082	2
1083	1
1085	1
1086	2
1087	2
1088	2
1090	1
1091	3
1092	2
1093	2
1094	4
1095	1
1096	2
1097	1
1098	2
1099	3
1100	1
1101	1
1102	1
1105	2
1106	1
1108	1
1109	4
1110	5
1112	1
1113	1
1115	2
1116	2
1117	1
1118	3
1119	2
1120	1
1121	5
1122	5
1123	2
1125	2
1126	1
1127	2
1128	2
1131	1
1133	2
1134	2
1135	2
1136	4
1138	2
1140	3
1141	5
1142	2
1143	2
1144	2
1145	4
1146	3
1147	4
1148	4
1149	2
1150	2
1151	1
1152	1
1153	2
1154	1
1155	3
1156	1
1157	1
1158	2
1159	1
1160	2
1161	1
1162	1
1163	1
1164	5
1165	1
1166	3
1167	3
1168	2
1169	1
1170	2
1172	1
1174	1
1175	3
1176	2
1177	3
1180	2
1181	2
1182	2
1183	1
1184	4
1185	3
1187	2
1188	1
1189	1
1190	2
1191	2
1192	3
1194	2
1196	2
1197	2
1199	3
1200	2
1201	2
1203	1
1204	5
1205	3
1206	1
1207	1
1210	1
1211	2
1212	2
1214	2
1215	2
1216	1
1217	2
1218	3
1219	1
1220	2
1221	1
1223	1
1225	2
1226	1
1227	2
1228	1
1229	2
1230	2
1231	2
1233	1
1234	2
1235	2
1238	2
1240	1
1241	1
1243	1
1244	4
1245	2
1247	1
1248	1
1249	2
1250	2
1251	1
1252	1
1253	1
1254	2
1255	1
1256	1
1257	2
1258	2
1261	1
1263	1
1264	1
1265	1
1267	1
1268	3
1269	1
1270	3
1271	2
1273	1
1276	4
1277	3
1279	2
1282	2
1283	1
1284	2
1285	1
1286	1
1289	1
1290	1
1291	3
1292	1
1293	1
1294	1
1295	3
1296	2
1297	1
1299	3
1300	1
1303	1
1304	3
1305	1
1306	1
1307	2
1309	3
1312	2
1313	2
1314	1
1315	2
1319	1
1322	2
1323	2
1324	1
1325	1
1327	5
1328	1
1330	1
1331	3
1332	2
1334	2
1335	3
1336	1
1339	5
1340	1
1342	1
1343	1
1344	1
1345	1
1346	1
1348	1
1349	3
1350	1
1351	1
1352	1
1355	1
1356	2
1357	1
1358	3
1360	1
1361	2
1362	1
1366	2
1367	2
1370	1
1371	1
1372	2
1373	1
1375	1
1376	1
1377	1
1379	1
1380	2
1381	1
1382	1
1383	2
1384	1
1385	1
1386	1
1387	2
1388	4
1389	1
1390	2
1391	1
1392	5
1393	2
1395	1
1398	1
1400	2
1401	1
1402	1
1404	2
1405	1
1408	1
1412	1
1414	1
1416	1
1417	1
1418	1
1420	1
1422	1
1424	1
1425	1
1426	1
1427	1
1428	1
1429	3
1430	1
1431	1
1432	1
1434	3
1436	1
1437	1
1440	1
1441	1
1442	1
1443	1
1445	1
1446	1
1447	2
1448	3
1449	1
1450	3
1451	1
1452	2
1453	1
1454	1
1455	1
1458	2
1459	1
1460	1
1461	1
1462	1
1463	1
1465	1
1468	1
1469	1
1470	2
1471	2
1472	1
1473	2
1475	1
1478	4
1479	1
1481	2
1482	2
1483	2
1484	1
1485	1
1487	1
1489	2
1491	1
1492	3
1494	2
1495	2
1496	2
1497	1
1498	1
1500	1
1501	1
1502	2
1506	2
1507	1
1510	2
1512	1
1513	2
1515	1
1517	3
1518	2
1520	2
1521	2
1522	3
1526	2
1528	1
1532	2
1533	1
1534	1
1536	1
1537	2
1538	1
1539	1
1541	2
1542	1
1543	1
1545	3
1548	1
1554	1
1555	1
1558	1
1559	1
1561	2
1562	1
1563	1
1566	1
1568	1
1569	2
1570	1
1571	1
1577	1
1580	1
1582	1
1583	1
1585	2
1586	2
1590	1
1592	1
1593	1
1594	2
1595	2
1596	3
1599	1
1602	1
1603	2
1608	3
1611	1
1616	1
1617	1
1619	1
1620	1
1622	1
1624	1
1629	1
1630	1
1632	1
1635	1
1636	1
1640	1
1642	1
1643	1
1644	1
1645	1
1647	1
1649	1
1651	1
1652	1
1653	1
1655	2
1660	1
1665	1
1670	1
1673	1
1677	1
1679	1
1683	1
1686	2
1688	1
1690	1
1691	3
1692	1
1696	1
1699	1
1702	1
1708	1
1709	1
1712	1
1713	1
1715	1
1720	1
1723	1
1724	2
1730	1
1731	2
1735	1
1738	2
1739	1
1740	1
1748	1
1749	1
1750	1
1754	1
1755	1
1756	2
1757	2
1758	2
1759	2
1760	1
1762	1
1771	1
1774	1
1775	1
1776	1
1779	1
1782	1
1786	1
1790	2
1791	1
1792	1
1793	1
1796	1
1799	1
1802	1
1804	2
1805	1
1808	2
1811	1
1813	1
1814	1
1815	1
1820	1
1822	1
1825	2
1829	1
1830	2
1833	1
1835	1
1836	1
1837	1
1840	1
1846	1
1849	1
1850	1
1855	2
1858	1
1860	1
1861	1
1862	1
1865	2
1867	1
1873	2
1875	1
1878	1
1881	1
1882	1
1883	1
1887	1
1889	1
1893	1
1897	1
1899	1
1903	1
1905	1
1906	1
1911	1
1912	1
1913	1
1919	1
1923	1
1926	1
1929	2
1933	1
1936	2
1941	1
1944	1
1945	3
1949	1
1950	1
1951	1
1953	1
1956	1
1961	1
1964	1
1965	1
1966	1
1968	1
1970	1
1971	1
1972	1
1973	1
1974	1
1975	1
1977	1
1980	1
1983	1
1984	1
1985	1
1992	1
1996	1
1997	1
2003	1
2007	1
2011	2
2013	1
2017	1
2018	2
2030	1
2032	1
2034	2
2035	1
2054	1
2056	1
2057	1
2059	1
2060	1
2062	1
2066	1
2068	1
2070	1
2072	1
2078	1
2083	1
2086	1
2088	1
2093	1
2099	3
2104	2
2108	1
2110	1
2113	1
2114	2
2115	1
2117	1
2118	1
2121	1
2129	1
2130	1
2132	1
2133	1
2134	1
2138	2
2141	1
2143	1
2151	1
2154	1
2158	1
2160	1
2161	1
2176	1
2178	1
2180	1
2186	1
2188	1
2195	1
2196	2
2202	1
2207	3
2209	1
2216	1
2220	1
2227	1
2235	1
2237	1
2241	3
2242	1
2243	1
2244	1
2246	2
2260	2
2263	1
2270	1
2271	1
2274	1
2276	1
2278	1
2282	1
2284	2
2288	1
2298	1
2301	1
2309	1
2310	1
2312	1
2320	1
2327	2
2342	1
2343	1
2350	2
2359	1
2360	1
2366	1
2367	1
2369	1
2382	1
2384	1
2388	2
2393	1
2396	1
2407	1
2410	1
2414	1
2415	1
2422	1
2432	1
2433	2
2439	1
2440	1
2443	1
2445	1
2448	1
2449	1
2458	1
2466	1
2469	1
2479	1
2491	1
2494	1
2503	1
2510	1
2517	1
2518	1
2522	1
2523	1
2524	2
2546	2
2554	1
2563	1
2578	1
2590	2
2594	1
2609	3
2612	1
2615	1
2626	1
2629	1
2630	1
2636	1
2637	1
2643	1
2657	1
2661	1
2681	1
2697	1
2698	1
2702	1
2704	1
2710	1
2731	1
2732	1
2736	1
2743	1
2746	1
2748	1
2750	1
2754	1
2756	1
2758	1
2759	1
2761	1
2762	1
2767	1
2772	1
2773	1
2790	1
2791	1
2811	1
2812	2
2845	1
2850	2
2851	1
2852	1
2854	1
2856	1
2857	1
2861	1
2874	1
2883	1
2891	1
2898	1
2904	1
2906	1
2917	1
2923	1
2936	1
2940	1
2951	1
2963	1
2985	1
2988	1
3000	1
3003	1
3009	1
3012	1
3057	1
3059	1
3070	1
3099	1
3109	1
3143	2
3157	1
3158	1
3162	1
3168	1
3193	1
3204	1
3233	1
3263	1
3268	1
3275	1
3277	1
3279	1
3281	1
3295	1
3320	1
3328	1
3354	1
3359	1
3362	1
3373	1
3383	1
3451	1
3461	1
3498	1
3522	1
3544	2
3619	1
3638	1
3639	1
3703	1
3720	1
3728	1
3748	1
3798	1
3828	1
3836	1
3853	1
3882	1
3890	1
3914	1
3938	2
4024	1
4059	1
4119	1
4191	1
4207	1
4218	1
4249	1
4255	1
4318	1
4334	1
4337	1
4513	1
4537	1
4545	1
4601	1
4646	1
4674	1
4675	1
4677	1
4701	1
4704	1
4742	1
4883	1
4916	1
4974	1
5032	1
5043	1
5096	1
5223	1
5240	1
5249	1
5308	1
5315	1
5349	1
5490	1
5535	1
5547	1
5674	1
5773	1
5907	1
6013	1
6026	1
6717	1
6751	1
7117	1
7403	1
7422	1
7671	1
8155	1
8408	1
8419	1
8687	1
8761	1
9378	1
9740	1
10084	1
10298	1
10336	1
11081	1
12845	1
15181	1
16266	1
33348	1
933481	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................................_...............................
.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]