File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/6b5c36a63ad5b85e9667de5cc2fdbe/.command.log
Size
5.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-09b6a3-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/6b5c36a63ad5b85e9667de5cc2fdbe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/6b5c36a63ad5b85e9667de5cc2fdbe/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/101c08f7fe9d6ae50551642478b84e/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/8bb9d7a57e25462f517df3e09b4583/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/22 [00:00<?, ?it/s]TRPS1--CSMD3
starfusion
arriba
DUT--ANXA2
starfusion
arriba
PVT1--COLEC10
starfusion
arriba
LY6K--TSNARE1
starfusion
arriba
GRID1--ADK
starfusion
arriba
CEP85--CATSPER4
starfusion
arriba
PAPSS2--BLNK
starfusion
arriba
ZHX2--COL14A1
starfusion
arriba
DOCK1--AZIN1
starfusion
arriba
ATP6V1C1--ZNF280D
starfusion
arriba
MROH1--AC105118.1
starfusion
arriba
STK3--PPP1R16A
starfusion
arriba
KAT6B--WARS2P1
arriba
KAT6B--RPA2P2
arriba
TRPS1--EBAG9
arriba
THSD4--AC103993.1
arriba
THSD4--Y_RNA
arriba
LRP5--OR4A9P
arriba
LRP5--OR4X7P
arriba
NEO1--CSMD3
arriba
TCF7L2--TCF7L2
arriba
TCF7L2--RNU7-165P
arriba

Processing TRPS1--CSMD3:   0%|          | 0/22 [00:00<?, ?it/s]
Processing TRPS1--CSMD3:   5%|▍         | 1/22 [00:00<00:02,  9.03it/s]
Processing DUT--ANXA2:   5%|▍         | 1/22 [00:00<00:02,  9.03it/s]  
Processing DUT--ANXA2:   9%|▉         | 2/22 [00:00<00:02,  9.28it/s]
Processing PVT1--COLEC10:   9%|▉         | 2/22 [00:00<00:02,  9.28it/s]
Processing PVT1--COLEC10:  14%|█▎        | 3/22 [00:00<00:02,  9.38it/s]
Processing LY6K--TSNARE1:  14%|█▎        | 3/22 [00:00<00:02,  9.38it/s]
Processing LY6K--TSNARE1:  18%|█▊        | 4/22 [00:00<00:01,  9.42it/s]
Processing GRID1--ADK:  18%|█▊        | 4/22 [00:00<00:01,  9.42it/s]   
Processing GRID1--ADK:  23%|██▎       | 5/22 [00:00<00:01,  9.45it/s]
Processing CEP85--CATSPER4:  23%|██▎       | 5/22 [00:00<00:01,  9.45it/s]
Processing CEP85--CATSPER4:  27%|██▋       | 6/22 [00:00<00:01,  9.46it/s]
Processing PAPSS2--BLNK:  27%|██▋       | 6/22 [00:00<00:01,  9.46it/s]   
Processing PAPSS2--BLNK:  32%|███▏      | 7/22 [00:00<00:01,  9.47it/s]
Processing ZHX2--COL14A1:  32%|███▏      | 7/22 [00:00<00:01,  9.47it/s]
Processing ZHX2--COL14A1:  36%|███▋      | 8/22 [00:00<00:01,  9.48it/s]
Processing DOCK1--AZIN1:  36%|███▋      | 8/22 [00:00<00:01,  9.48it/s] 
Processing DOCK1--AZIN1:  41%|████      | 9/22 [00:00<00:01,  9.49it/s]
Processing ATP6V1C1--ZNF280D:  41%|████      | 9/22 [00:00<00:01,  9.49it/s]
Processing ATP6V1C1--ZNF280D:  45%|████▌     | 10/22 [00:01<00:01,  9.49it/s]
Processing MROH1--AC105118.1:  45%|████▌     | 10/22 [00:01<00:01,  9.49it/s]
Processing MROH1--AC105118.1:  50%|█████     | 11/22 [00:01<00:01,  9.49it/s]
Processing STK3--PPP1R16A:  50%|█████     | 11/22 [00:01<00:01,  9.49it/s]   
Processing STK3--PPP1R16A:  55%|█████▍    | 12/22 [00:01<00:01,  9.49it/s]
Processing KAT6B--WARS2P1:  55%|█████▍    | 12/22 [00:01<00:01,  9.49it/s]
Processing KAT6B--WARS2P1:  59%|█████▉    | 13/22 [00:01<00:00,  9.48it/s]
Processing KAT6B--RPA2P2:  59%|█████▉    | 13/22 [00:01<00:00,  9.48it/s] 
Processing KAT6B--RPA2P2:  64%|██████▎   | 14/22 [00:01<00:00,  9.49it/s]
Processing TRPS1--EBAG9:  64%|██████▎   | 14/22 [00:01<00:00,  9.49it/s] 
Processing TRPS1--EBAG9:  68%|██████▊   | 15/22 [00:01<00:00,  9.49it/s]
Processing THSD4--AC103993.1:  68%|██████▊   | 15/22 [00:01<00:00,  9.49it/s]
Processing THSD4--AC103993.1:  73%|███████▎  | 16/22 [00:01<00:00,  9.49it/s]
Processing THSD4--Y_RNA:  73%|███████▎  | 16/22 [00:01<00:00,  9.49it/s]     
Processing THSD4--Y_RNA:  77%|███████▋  | 17/22 [00:01<00:00,  9.49it/s]
Processing LRP5--OR4A9P:  77%|███████▋  | 17/22 [00:01<00:00,  9.49it/s]
Processing LRP5--OR4A9P:  82%|████████▏ | 18/22 [00:01<00:00,  9.49it/s]
Processing LRP5--OR4X7P:  82%|████████▏ | 18/22 [00:01<00:00,  9.49it/s]
Processing LRP5--OR4X7P:  86%|████████▋ | 19/22 [00:02<00:00,  9.50it/s]
Processing NEO1--CSMD3:  86%|████████▋ | 19/22 [00:02<00:00,  9.50it/s] 
Processing NEO1--CSMD3:  91%|█████████ | 20/22 [00:02<00:00,  9.50it/s]
Processing TCF7L2--TCF7L2:  91%|█████████ | 20/22 [00:02<00:00,  9.50it/s]
Processing TCF7L2--TCF7L2:  95%|█████████▌| 21/22 [00:02<00:00,  9.50it/s]
Processing TCF7L2--RNU7-165P:  95%|█████████▌| 21/22 [00:02<00:00,  9.50it/s]
Processing TCF7L2--RNU7-165P: 100%|██████████| 22/22 [00:02<00:00,  9.50it/s]
Processing TCF7L2--RNU7-165P: 100%|██████████| 22/22 [00:02<00:00,  9.47it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory